Wall clock time and date at job start Tue Mar 31 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35731 * 117.00054 * 2 1 4 4 C 1.39183 * 119.84172 * 0.02562 * 3 2 1 5 5 C 1.36549 * 120.38995 * 179.97438 * 4 3 2 6 6 C 1.40033 * 120.06025 * 0.02562 * 5 4 3 7 7 C 1.46740 * 120.15785 * 180.02562 * 6 5 4 8 8 C 1.35176 * 119.99654 * 45.20686 * 7 6 5 9 9 C 1.41805 * 119.99830 * 9.79542 * 8 7 6 10 10 O 1.21737 * 120.00351 * 7.04265 * 9 8 7 11 11 N 1.34783 * 119.99823 * 187.03771 * 9 8 7 12 12 C 1.46502 * 119.99580 * 359.97438 * 11 9 8 13 13 C 1.50699 * 109.47186 * 90.00179 * 12 11 9 14 14 H 1.07999 * 119.99562 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00161 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99649 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99942 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47317 * 89.99716 * 17 15 13 19 19 H 1.48505 * 109.47064 * 209.99751 * 17 15 13 20 20 H 1.48506 * 109.47004 * 329.99440 * 17 15 13 21 21 C 1.46495 * 120.00223 * 180.02562 * 11 9 8 22 22 C 1.50696 * 109.47536 * 89.99596 * 21 11 9 23 23 C 1.34519 * 125.78795 * 89.99588 * 22 21 11 24 24 C 1.41379 * 106.83968 * 180.02562 * 23 22 21 25 25 C 1.34508 * 106.84297 * 0.02562 * 24 23 22 26 26 O 1.34303 * 108.42177 * 359.73097 * 25 24 23 27 27 C 1.40550 * 119.68857 * 0.02562 * 6 5 4 28 28 O 1.35689 * 120.19535 * 180.02562 * 27 6 5 29 29 C 1.42898 * 116.99821 * 179.97438 * 28 27 6 30 30 C 1.38413 * 119.61296 * 359.97438 * 27 6 5 31 31 H 1.09000 * 109.47209 * 300.00006 * 1 2 3 32 32 H 1.09001 * 109.47253 * 60.00269 * 1 2 3 33 33 H 1.09001 * 109.47164 * 179.97438 * 1 2 3 34 34 H 1.07998 * 119.80183 * 359.97438 * 4 3 2 35 35 H 1.07994 * 119.96288 * 180.02562 * 5 4 3 36 36 H 1.07999 * 120.00461 * 225.21421 * 7 6 5 37 37 H 1.07997 * 119.99543 * 189.78918 * 8 7 6 38 38 H 1.09000 * 109.46707 * 210.00034 * 12 11 9 39 39 H 1.09001 * 109.47459 * 329.99896 * 12 11 9 40 40 H 0.97006 * 119.99762 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.47365 * 210.00521 * 21 11 9 42 42 H 1.09010 * 109.46811 * 329.99686 * 21 11 9 43 43 H 1.08003 * 126.57858 * 359.97376 * 23 22 21 44 44 H 1.08003 * 126.57673 * 179.97438 * 24 23 22 45 45 H 1.08010 * 125.79063 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.47254 * 59.99876 * 29 28 27 47 47 H 1.09001 * 109.46558 * 179.97438 * 29 28 27 48 48 H 1.08997 * 109.47514 * 299.99383 * 29 28 27 49 49 H 1.08001 * 120.02973 * 180.29643 * 30 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2840 2.3746 0.0005 5 6 1.8922 3.5971 0.0011 6 6 3.2898 3.6852 0.0005 7 6 3.9457 4.9979 0.0017 8 6 3.5103 5.9702 0.8337 9 6 2.5650 5.6662 1.8461 10 8 2.2421 4.5103 2.0502 11 7 2.0242 6.6571 2.5826 12 6 2.4134 8.0480 2.3374 13 6 1.4940 8.6529 1.3079 14 1 0.6995 8.0604 0.8789 15 6 1.6670 9.9628 0.9138 16 7 0.8649 10.4904 0.0151 17 14 3.0417 10.9874 1.6553 18 1 4.2691 10.8382 0.8330 19 1 2.6350 12.4154 1.6831 20 1 3.3137 10.5231 3.0395 21 6 1.0481 6.3431 3.6288 22 6 1.7669 6.1082 4.9324 23 6 2.0564 7.0470 5.8513 24 6 2.7307 6.3922 6.9073 25 6 2.8135 5.0926 6.5704 26 8 2.2231 4.9254 5.3758 27 6 4.0614 2.5104 -0.0011 28 8 5.4163 2.5838 -0.0011 29 6 6.1329 1.3476 -0.0022 30 6 3.4310 1.2782 -0.0016 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2058 2.3113 0.0005 35 1 1.2948 4.4968 0.0019 36 1 4.7761 5.1872 -0.6623 37 1 3.8825 6.9784 0.7274 38 1 2.3419 8.6143 3.2659 39 1 3.4395 8.0791 1.9710 40 1 0.9869 11.4118 -0.2625 41 1 0.3550 7.1768 3.7411 42 1 0.4949 5.4455 3.3521 43 1 1.8199 8.0992 5.7930 44 1 3.1079 6.8481 7.8108 45 1 3.2723 4.3145 7.1626 46 1 5.8705 0.7763 -0.8927 47 1 7.2042 1.5487 -0.0026 48 1 5.8707 0.7747 0.8872 49 1 4.0173 0.3712 0.0020 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096256356.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:08 Heat of formation + Delta-G solvation = -18.311704 kcal Electronic energy + Delta-G solvation = -34267.092403 eV Core-core repulsion = 29742.873442 eV Total energy + Delta-G solvation = -4524.218962 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.22922 -40.47213 -39.37098 -38.86064 -36.57240 -35.19063 -33.24848 -32.72442 -32.49127 -30.73510 -30.28735 -29.17453 -27.91542 -27.27339 -27.05996 -25.67949 -23.37859 -22.55296 -21.77569 -21.38749 -21.05477 -20.01748 -18.68147 -17.85839 -17.32776 -17.01760 -16.81066 -16.54746 -16.03132 -15.95071 -15.85540 -15.47759 -15.36595 -14.90335 -14.68296 -14.51633 -14.18054 -13.76245 -13.49199 -13.26410 -12.99452 -12.74672 -12.56168 -12.52972 -12.49136 -12.36497 -12.30546 -12.23179 -11.99022 -11.71349 -11.51771 -11.42109 -11.17746 -10.90495 -10.80644 -10.77329 -10.41997 -10.31921 -9.69008 -9.61996 -9.25143 -9.08524 -8.73760 -8.32666 -8.18633 -7.78696 -7.32601 -6.23231 -4.24926 1.14019 1.73860 1.98236 2.20800 2.85124 3.16963 3.17330 3.25419 3.27186 3.31780 3.43849 3.98188 4.04812 4.13302 4.25495 4.92627 5.01676 5.02287 5.04512 5.07735 5.11748 5.12461 5.20586 5.21987 5.26753 5.29541 5.38346 5.41971 5.46282 5.60035 5.66256 5.72929 5.89358 5.99977 6.04985 6.05913 6.20297 6.29622 6.36420 6.40396 6.44425 6.60504 6.64983 6.74685 6.77272 6.85366 6.95273 7.28547 7.33727 7.41668 7.47104 7.59095 8.08838 8.38052 8.81091 8.93677 9.36111 10.89257 Molecular weight = 371.16amu Principal moments of inertia in cm(-1) A = 0.007622 B = 0.003371 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.526753 B = 8304.004384 C = 9715.182195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.169 3.831 4 C -0.249 4.249 5 C 0.047 3.953 6 C -0.122 4.122 7 C -0.017 4.017 8 C -0.202 4.202 9 C 0.548 3.452 10 O -0.550 6.550 11 N -0.583 5.583 12 C 0.208 3.792 13 C -0.540 4.540 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.890 5.890 17 Si 0.868 3.132 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.264 1.264 21 C 0.196 3.804 22 C -0.012 4.012 23 C -0.208 4.208 24 C -0.217 4.217 25 C -0.052 4.052 26 O -0.165 6.165 27 C 0.175 3.825 28 O -0.309 6.309 29 C 0.028 3.972 30 C -0.257 4.257 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.140 0.860 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.266 0.734 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.196 0.804 46 H 0.054 0.946 47 H 0.097 0.903 48 H 0.054 0.946 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.723 -15.968 3.698 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.123 3.877 4 C -0.268 4.268 5 C 0.029 3.971 6 C -0.123 4.123 7 C -0.037 4.037 8 C -0.222 4.222 9 C 0.341 3.659 10 O -0.432 6.432 11 N -0.313 5.313 12 C 0.087 3.913 13 C -0.578 4.578 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.694 3.306 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.188 1.188 21 C 0.072 3.928 22 C -0.064 4.064 23 C -0.228 4.228 24 C -0.236 4.236 25 C -0.120 4.120 26 O -0.059 6.059 27 C 0.130 3.870 28 O -0.222 6.222 29 C -0.068 4.068 30 C -0.277 4.277 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.157 0.843 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.212 0.788 46 H 0.073 0.927 47 H 0.116 0.884 48 H 0.073 0.927 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.674 -16.651 3.542 17.654 hybrid contribution 0.582 1.018 0.719 1.375 sum 5.257 -15.634 4.261 17.035 Atomic orbital electron populations 1.23037 0.78384 1.03476 1.01759 1.85955 1.21455 1.27504 1.88506 1.18734 0.91405 0.83858 0.93692 1.20669 0.99787 0.92094 1.14272 1.20473 0.92270 0.97058 0.87330 1.18075 0.92340 0.90839 1.11078 1.22030 0.95607 0.90574 0.95503 1.22272 1.01537 1.00584 0.97854 1.17252 0.81485 0.84724 0.82483 1.90810 1.62890 1.19306 1.70187 1.47992 1.41785 1.08638 1.32844 1.19887 0.96439 0.77454 0.97544 1.21357 1.16279 0.97499 1.22649 0.90247 1.24845 0.95827 0.97419 0.94474 1.69884 1.37633 1.14684 1.30496 0.86977 0.82861 0.80241 0.80503 1.19781 1.20878 1.18810 1.19691 0.89607 1.03158 0.80312 1.23276 1.02233 0.82708 0.98193 1.21655 1.05434 1.00537 0.95132 1.21770 1.06144 0.94141 1.01572 1.23957 1.02529 0.98511 0.87016 1.84123 1.57277 1.33546 1.30996 1.18651 0.81824 0.92405 0.94167 1.86033 1.15519 1.32308 1.88361 1.23035 0.96600 0.85739 1.01377 1.20050 0.92432 0.96958 1.18245 0.92414 0.92547 0.88584 0.85777 0.85535 0.85292 0.84256 0.94827 0.94944 0.92347 0.86959 0.88969 0.83510 0.83923 0.78768 0.92695 0.88436 0.92701 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.80 101.05 0.99 1.27 16 2 O -0.32 -4.34 10.48 -18.90 -0.20 -4.54 16 3 C 0.17 2.58 6.69 -39.04 -0.26 2.31 16 4 C -0.25 -3.91 8.96 -39.84 -0.36 -4.26 16 5 C 0.05 0.82 6.55 -39.52 -0.26 0.56 16 6 C -0.12 -2.14 4.48 -104.92 -0.47 -2.61 16 7 C -0.02 -0.29 9.35 -37.24 -0.35 -0.64 16 8 C -0.20 -3.83 9.02 -39.31 -0.35 -4.18 16 9 C 0.55 11.21 6.56 -14.89 -0.10 11.12 16 10 O -0.55 -11.73 11.54 5.16 0.06 -11.67 16 11 N -0.58 -11.83 2.44 -179.79 -0.44 -12.27 16 12 C 0.21 4.52 3.97 -5.19 -0.02 4.50 16 13 C -0.54 -13.75 9.94 -34.44 -0.34 -14.09 16 14 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 15 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.89 -25.29 13.96 55.43 0.77 -24.52 16 17 Si 0.87 19.49 27.47 -169.99 -4.67 14.82 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 21 C 0.20 3.56 5.93 -5.20 -0.03 3.53 16 22 C -0.01 -0.21 6.90 -35.63 -0.25 -0.46 16 23 C -0.21 -3.37 10.81 -39.70 -0.43 -3.80 16 24 C -0.22 -3.09 10.91 -39.71 -0.43 -3.53 16 25 C -0.05 -0.74 12.09 29.41 0.36 -0.38 16 26 O -0.16 -2.94 10.65 5.71 0.06 -2.88 16 27 C 0.18 2.82 6.70 -38.65 -0.26 2.56 16 28 O -0.31 -4.46 9.95 -18.77 -0.19 -4.65 16 29 C 0.03 0.27 9.81 101.05 0.99 1.26 16 30 C -0.26 -3.86 8.97 -39.33 -0.35 -4.22 16 31 H 0.06 0.55 7.65 -51.93 -0.40 0.16 16 32 H 0.06 0.49 7.65 -51.93 -0.40 0.10 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.12 1.68 6.26 -52.49 -0.33 1.36 16 35 H 0.13 2.33 7.09 -52.49 -0.37 1.95 16 36 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.14 2.62 6.03 -52.49 -0.32 2.30 16 38 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 39 H 0.03 0.70 5.43 -51.93 -0.28 0.41 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.11 1.91 8.07 -51.93 -0.42 1.49 16 42 H 0.09 1.67 7.42 -51.92 -0.39 1.28 16 43 H 0.15 2.24 8.06 -52.48 -0.42 1.82 16 44 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 45 H 0.20 1.96 8.06 -52.48 -0.42 1.54 16 46 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 49 H 0.13 1.66 6.31 -52.49 -0.33 1.32 16 LS Contribution 409.41 15.07 6.17 6.17 Total: -1.00 -32.48 409.41 -6.97 -39.46 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.52 Total: 9.19 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.02 Total: -9.10 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.33 Total: -36.79 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.26 Total: -23.74 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.67 Total: 14.82 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.48 -6.97 -39.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096256356.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.144 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds