Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35957 * 116.99901 * 2 1 4 4 C 1.38114 * 120.00382 * 0.27620 * 3 2 1 5 5 C 1.39911 * 119.84248 * 180.27225 * 4 3 2 6 6 C 1.47063 * 120.07733 * 179.72007 * 5 4 3 7 7 C 1.34869 * 119.99775 * 136.63545 * 6 5 4 8 8 C 1.46410 * 120.00331 * 349.65722 * 7 6 5 9 9 N 1.31368 * 125.03133 * 353.27699 * 8 7 6 10 10 C 1.35629 * 108.73798 * 180.26410 * 9 8 7 11 11 C 1.39793 * 133.59096 * 179.97438 * 10 9 8 12 12 C 1.37772 * 119.70960 * 179.97438 * 11 10 9 13 13 Cl 1.73599 * 119.79725 * 180.02562 * 12 11 10 14 14 C 1.38829 * 120.40098 * 0.04812 * 12 11 10 15 15 C 1.37985 * 120.49589 * 359.97358 * 14 12 11 16 16 C 1.38589 * 119.93112 * 0.02562 * 15 14 12 17 17 O 1.34798 * 125.03485 * 173.57614 * 8 7 6 18 18 C 1.39985 * 119.84751 * 359.45245 * 5 4 3 19 19 C 1.37686 * 119.99954 * 0.27364 * 18 5 4 20 20 C 1.39017 * 120.16159 * 0.02562 * 19 18 5 21 21 O 1.35654 * 119.92294 * 180.02562 * 20 19 18 22 22 C 1.34767 * 117.00213 * 354.18752 * 21 20 19 23 23 H 1.08004 * 120.00069 * 5.07782 * 22 21 20 24 24 C 1.38646 * 120.00301 * 185.07045 * 22 21 20 25 25 N 1.31564 * 119.99599 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00262 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47348 * 90.00447 * 26 24 22 28 28 H 1.48506 * 109.47282 * 210.00489 * 26 24 22 29 29 H 1.48502 * 109.47202 * 330.00093 * 26 24 22 30 30 H 1.08993 * 109.47455 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47476 * 300.00530 * 1 2 3 32 32 H 1.09008 * 109.47294 * 59.99978 * 1 2 3 33 33 H 1.08003 * 120.07645 * 0.02562 * 4 3 2 34 34 H 1.08004 * 120.00091 * 316.63231 * 6 5 4 35 35 H 1.08003 * 119.99646 * 169.66713 * 7 6 5 36 36 H 1.07997 * 120.14379 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.75534 * 179.97438 * 14 12 11 38 38 H 1.07999 * 120.03398 * 180.02562 * 15 14 12 39 39 H 1.08004 * 119.99864 * 180.25032 * 18 5 4 40 40 H 1.08008 * 119.91757 * 180.02562 * 19 18 5 41 41 H 0.97000 * 119.99408 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2940 2.3697 0.0058 5 6 1.9326 3.6146 0.0000 6 6 1.1368 4.8513 -0.0001 7 6 1.4891 5.8799 0.7978 8 6 2.5170 5.6923 1.8233 9 7 3.0686 4.5419 2.1365 10 6 3.9706 4.7469 3.1284 11 6 4.8318 3.9043 3.8374 12 6 5.6498 4.4291 4.8139 13 17 6.7206 3.3850 5.6952 14 6 5.6225 5.7878 5.0977 15 6 4.7770 6.6308 4.4059 16 6 3.9468 6.1212 3.4201 17 8 3.0335 6.6734 2.5899 18 6 3.3309 3.6803 0.0000 19 6 4.0745 2.5215 0.0000 20 6 3.4402 1.2845 -0.0006 21 8 4.1776 0.1458 -0.0001 22 6 5.5129 0.2816 -0.1206 23 1 5.9571 1.2661 -0.1294 24 6 6.3167 -0.8425 -0.2332 25 7 5.7757 -2.0417 -0.2228 26 14 8.1677 -0.6543 -0.3996 27 1 8.7883 -0.6511 0.9495 28 1 8.7112 -1.7868 -1.1917 29 1 8.4753 0.6245 -1.0890 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 0.2154 2.3147 0.0107 34 1 0.2702 4.9357 -0.6392 35 1 1.0127 6.8421 0.6803 36 1 4.8564 2.8467 3.6199 37 1 6.2678 6.1881 5.8656 38 1 4.7621 7.6867 4.6325 39 1 3.8265 4.6399 -0.0004 40 1 5.1534 2.5737 0.0004 41 1 6.3380 -2.8280 -0.3019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096403094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = 39.050267 kcal Electronic energy + Delta-G solvation = -30573.337366 eV Core-core repulsion = 26220.648781 eV Total energy + Delta-G solvation = -4352.688584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 371.076 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.11387 -39.55885 -38.31800 -37.50436 -36.88352 -36.32682 -34.59576 -33.37840 -32.23555 -30.62892 -29.82124 -29.25269 -28.32466 -26.50145 -25.43547 -24.28202 -23.00194 -22.20727 -21.63903 -21.44448 -19.44634 -18.28793 -18.02390 -17.63508 -17.12642 -16.73673 -16.20838 -15.82994 -15.31091 -15.08326 -14.70869 -14.56704 -14.24572 -14.11371 -13.85999 -13.76148 -13.41071 -13.37661 -13.35252 -12.85533 -12.67444 -12.31644 -11.89649 -11.76793 -11.65457 -11.54159 -11.37759 -11.27436 -11.08342 -11.04668 -10.93995 -10.74022 -10.56613 -10.37678 -9.98901 -9.55420 -9.43562 -8.83795 -8.69987 -8.12658 -7.76368 -6.67320 -6.47842 -3.99852 0.31723 0.97121 1.37825 1.97836 2.24865 2.49644 2.57586 2.99189 3.13135 3.14279 3.18102 3.53558 3.94211 3.95490 4.08412 4.42644 4.59314 4.81623 4.84721 4.97100 5.05970 5.08537 5.17024 5.23889 5.40399 5.51234 5.55541 5.59866 5.69596 5.75978 5.88089 5.90691 5.99097 6.07898 6.12880 6.17098 6.26630 6.36933 6.41732 6.52233 6.66776 6.97191 7.10629 7.23789 7.39263 7.65432 7.73067 7.93701 8.24050 8.96349 9.67759 10.68639 Molecular weight = 371.08amu Principal moments of inertia in cm(-1) A = 0.006422 B = 0.004344 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4359.182818 B = 6443.805493 C = 9557.075261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.039 3.961 4 C -0.128 4.128 5 C -0.167 4.167 6 C 0.025 3.975 7 C -0.164 4.164 8 C 0.294 3.706 9 N -0.441 5.441 10 C 0.046 3.954 11 C -0.049 4.049 12 C -0.038 4.038 13 Cl -0.058 7.058 14 C -0.096 4.096 15 C -0.081 4.081 16 C 0.000 4.000 17 O -0.214 6.214 18 C 0.001 3.999 19 C -0.223 4.223 20 C 0.156 3.844 21 O -0.155 6.155 22 C -0.387 4.387 23 H 0.094 0.906 24 C 0.041 3.959 25 N -0.850 5.850 26 Si 0.939 3.061 27 H -0.272 1.272 28 H -0.276 1.276 29 H -0.266 1.266 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.095 0.905 40 H 0.129 0.871 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.766 16.202 6.168 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.220 6.220 3 C -0.006 4.006 4 C -0.148 4.148 5 C -0.169 4.169 6 C 0.004 3.996 7 C -0.183 4.183 8 C 0.089 3.911 9 N -0.169 5.169 10 C -0.068 4.068 11 C -0.068 4.068 12 C -0.066 4.066 13 Cl -0.029 7.029 14 C -0.115 4.115 15 C -0.100 4.100 16 C -0.051 4.051 17 O -0.107 6.107 18 C -0.019 4.019 19 C -0.243 4.243 20 C 0.100 3.900 21 O -0.056 6.056 22 C -0.463 4.463 23 H 0.111 0.889 24 C -0.165 4.165 25 N -0.484 5.484 26 Si 0.763 3.237 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.191 1.191 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.658 14.825 6.010 16.969 hybrid contribution 0.949 0.925 0.405 1.386 sum -4.710 15.751 6.415 17.647 Atomic orbital electron populations 1.22850 0.80623 1.02756 1.00095 1.86226 1.19181 1.26480 1.90067 1.17933 0.89320 0.84366 1.08962 1.20645 0.97990 0.90834 1.05318 1.17951 0.92674 0.91171 1.15081 1.22299 0.94608 0.91123 0.91564 1.20577 0.99148 1.01316 0.97289 1.24494 0.94293 0.79923 0.92365 1.71842 1.09674 1.23117 1.12243 1.19867 0.98656 0.91674 0.96603 1.20266 0.92743 1.00934 0.92877 1.20528 0.96937 0.91512 0.97606 1.98387 1.63448 1.66530 1.74545 1.20783 0.99385 0.90855 1.00434 1.19673 0.95365 1.00569 0.94370 1.20384 0.94934 0.93373 0.96406 1.84599 1.45686 1.38078 1.42342 1.20374 0.92035 0.96344 0.93130 1.20645 1.00158 0.90788 1.12696 1.18798 0.88218 0.87463 0.95503 1.84001 1.19517 1.25819 1.76305 1.21413 0.78621 0.94813 1.51414 0.88905 1.25317 1.00480 0.94227 0.96438 1.70070 1.36256 0.97661 1.44385 0.85739 0.80557 0.78538 0.78836 1.19701 1.20148 1.19075 0.89261 0.93752 0.93695 0.86466 0.84767 0.83994 0.83222 0.83602 0.84205 0.88700 0.85311 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.48 16 2 O -0.31 -6.70 10.28 -34.22 -0.35 -7.06 16 3 C 0.04 0.86 6.70 -39.12 -0.26 0.59 16 4 C -0.13 -2.30 8.77 -39.00 -0.34 -2.64 16 5 C -0.17 -2.83 4.66 -105.04 -0.49 -3.32 16 6 C 0.03 0.31 9.81 -37.20 -0.36 -0.05 16 7 C -0.16 -1.96 10.09 -37.49 -0.38 -2.34 16 8 C 0.29 4.44 6.89 -14.46 -0.10 4.34 16 9 N -0.44 -7.72 6.53 -9.59 -0.06 -7.78 16 10 C 0.05 0.76 7.23 -84.75 -0.61 0.14 16 11 C -0.05 -0.77 9.87 -39.17 -0.39 -1.15 16 12 C -0.04 -0.50 6.31 -39.53 -0.25 -0.75 16 13 Cl -0.06 -0.74 28.94 -51.86 -1.50 -2.24 16 14 C -0.10 -1.03 9.81 -39.46 -0.39 -1.42 16 15 C -0.08 -0.90 10.06 -39.54 -0.40 -1.30 16 16 C 0.00 0.00 7.42 -38.59 -0.29 -0.29 16 17 O -0.21 -3.11 10.80 1.75 0.02 -3.09 16 18 C 0.00 0.01 6.34 -39.13 -0.25 -0.24 16 19 C -0.22 -4.91 9.14 -39.49 -0.36 -5.27 16 20 C 0.16 3.85 6.67 -38.79 -0.26 3.59 16 21 O -0.15 -4.49 9.52 -14.09 -0.13 -4.62 16 22 C -0.39 -10.79 9.48 30.88 0.29 -10.50 16 23 H 0.09 2.40 5.19 -52.48 -0.27 2.13 16 24 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 25 N -0.85 -24.96 13.67 55.48 0.76 -24.20 16 26 Si 0.94 20.54 29.55 -169.99 -5.02 15.51 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 28 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 29 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 32 H 0.04 0.59 7.67 -51.92 -0.40 0.19 16 33 H 0.12 1.72 6.28 -52.48 -0.33 1.39 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.15 2.54 8.06 -52.49 -0.42 2.12 16 37 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.09 1.69 6.88 -52.48 -0.36 1.33 16 40 H 0.13 2.87 5.62 -52.48 -0.29 2.58 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -33.13 371.20 -8.36 -41.49 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -3.72 Total: 4.46 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -3.94 Total: -18.07 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.70 Total: -31.98 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.47 Total: -14.77 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.13 -8.36 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096403094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.538 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds