Wall clock time and date at job start Tue Mar 31 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99908 * 2 1 4 4 H 1.48500 * 109.47426 * 240.00071 * 3 2 1 5 5 H 1.48505 * 109.47298 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47275 * 120.00144 * 3 2 1 7 7 C 1.37869 * 119.99635 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00425 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47019 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46744 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.46866 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54326 * 68.37579 * 12 11 10 14 14 O 1.42097 * 110.54474 * 291.62182 * 12 11 10 15 15 N 1.65608 * 104.44945 * 179.97438 * 12 11 10 16 16 C 1.46495 * 119.99695 * 64.99881 * 15 12 11 17 17 H 1.08997 * 110.02255 * 335.06309 * 16 15 12 18 18 C 1.53876 * 110.03179 * 96.45317 * 16 15 12 19 19 C 1.54273 * 106.59631 * 119.28219 * 18 16 15 20 20 C 1.54889 * 104.19458 * 23.61488 * 19 18 16 21 21 C 1.54274 * 110.03215 * 213.61951 * 16 15 12 22 22 H 1.08997 * 110.48140 * 335.78486 * 21 16 15 23 23 C 1.50698 * 110.48354 * 98.42940 * 21 16 15 24 24 C 1.38240 * 119.98891 * 59.72839 * 23 21 16 25 25 C 1.38216 * 120.01341 * 179.72318 * 24 23 21 26 26 C 1.38353 * 119.98743 * 0.55134 * 25 24 23 27 27 Cl 1.73596 * 120.01293 * 179.74841 * 26 25 24 28 28 C 1.38349 * 119.96995 * 359.71738 * 26 25 24 29 29 C 1.38217 * 119.98954 * 0.02562 * 28 26 25 30 30 H 0.97000 * 120.00394 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47010 * 60.00180 * 9 7 2 32 32 H 1.09006 * 109.47122 * 299.99968 * 9 7 2 33 33 H 1.08993 * 109.47351 * 60.00060 * 10 9 7 34 34 H 1.08998 * 109.46530 * 299.99801 * 10 9 7 35 35 H 1.08996 * 109.47800 * 59.99786 * 11 10 9 36 36 H 1.09006 * 109.47089 * 299.99451 * 11 10 9 37 37 H 0.96999 * 120.00176 * 245.00119 * 15 12 11 38 38 H 1.08998 * 110.03309 * 238.56606 * 18 16 15 39 39 H 1.09005 * 110.03338 * 359.95251 * 18 16 15 40 40 H 1.09003 * 110.48143 * 142.28807 * 19 18 16 41 41 H 1.09000 * 110.48860 * 264.92816 * 19 18 16 42 42 H 1.08993 * 110.75638 * 80.37260 * 20 19 18 43 43 H 1.09008 * 110.74731 * 203.55795 * 20 19 18 44 44 H 1.08011 * 119.99416 * 359.97438 * 24 23 21 45 45 H 1.08007 * 120.00781 * 180.26934 * 25 24 23 46 46 H 1.08004 * 120.00638 * 179.97438 * 28 26 25 47 47 H 1.07994 * 119.99322 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9870 -0.0012 12 16 2.6590 -6.3658 -0.0019 13 8 3.3559 -6.4268 1.2350 14 8 3.3557 -6.4256 -1.2390 15 7 1.7086 -7.7220 -0.0019 16 6 0.8488 -8.0139 -1.1515 17 1 0.6100 -7.0924 -1.6824 18 6 1.5527 -9.0008 -2.0992 19 6 0.6594 -10.2566 -2.1703 20 6 -0.7508 -9.7417 -1.7894 21 6 -0.4477 -8.7043 -0.6798 22 1 -0.2881 -9.2035 0.2759 23 6 -1.5693 -7.7036 -0.5729 24 6 -1.9691 -6.9919 -1.6886 25 6 -3.0015 -6.0780 -1.5924 26 6 -3.6274 -5.8673 -0.3766 27 17 -4.9198 -4.7149 -0.2536 28 6 -3.2231 -6.5758 0.7408 29 6 -2.1941 -7.4932 0.6422 30 1 -0.4851 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8902 32 1 0.6246 -2.5571 0.8897 33 1 2.8719 -3.6044 0.8894 34 1 2.8718 -3.6042 -0.8906 35 1 0.8538 -5.0446 -0.8913 36 1 0.8533 -5.0451 0.8887 37 1 1.7213 -8.3231 0.7593 38 1 1.6548 -8.5586 -3.0901 39 1 2.5345 -9.2620 -1.7042 40 1 0.6562 -10.6656 -3.1807 41 1 0.9979 -11.0065 -1.4554 42 1 -1.2315 -9.2647 -2.6434 43 1 -1.3676 -10.5540 -1.4046 44 1 -1.4772 -7.1530 -2.6366 45 1 -3.3167 -5.5252 -2.4651 46 1 -3.7110 -6.4114 1.6903 47 1 -1.8782 -8.0460 1.5145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:31 Heat of formation + Delta-G solvation = -84.673106 kcal Electronic energy + Delta-G solvation = -29719.847650 eV Core-core repulsion = 25633.071063 eV Total energy + Delta-G solvation = -4086.776587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 371.111 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.28624 -38.29830 -36.86063 -36.44581 -35.74707 -34.65932 -33.68405 -32.17728 -31.91949 -31.27184 -27.94251 -27.79879 -27.09410 -23.72782 -23.33237 -22.48106 -20.93880 -20.66399 -20.30737 -19.14813 -17.74609 -17.16121 -16.90654 -16.56964 -15.93759 -15.67270 -15.49047 -15.31062 -14.76835 -14.47640 -14.39628 -13.97006 -13.81500 -13.70010 -13.56681 -13.01911 -12.84842 -12.57752 -12.39955 -12.25160 -11.96054 -11.85979 -11.81523 -11.77043 -11.69757 -11.36180 -11.31655 -11.19190 -11.13464 -11.06511 -10.91153 -10.87812 -10.83175 -10.81718 -10.43163 -9.93734 -9.76258 -9.32071 -9.22331 -9.08030 -8.66394 -8.38545 -6.03271 -4.06657 0.46279 0.92993 1.10256 2.06420 2.82666 3.33049 3.37017 3.37422 3.40092 3.91290 4.15229 4.22159 4.35736 4.43861 4.45660 4.63937 4.69771 4.80505 4.90336 5.03316 5.06699 5.11586 5.18196 5.19186 5.22470 5.32344 5.32739 5.34102 5.41500 5.49831 5.62677 5.71993 5.75198 5.88037 5.91566 5.97068 6.05087 6.07608 6.14163 6.27128 6.31335 6.45866 6.59066 6.87460 6.90499 7.58937 7.68980 7.94189 8.34662 8.99165 9.57856 11.07643 Molecular weight = 371.11amu Principal moments of inertia in cm(-1) A = 0.006701 B = 0.003681 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4177.547967 B = 7604.879630 C =10982.406786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.033 3.967 10 C -0.105 4.105 11 C -0.607 4.607 12 S 2.596 3.404 13 O -0.965 6.965 14 O -0.959 6.959 15 N -1.117 6.117 16 C 0.156 3.844 17 H 0.090 0.910 18 C -0.140 4.140 19 C -0.124 4.124 20 C -0.116 4.116 21 C -0.058 4.058 22 H 0.094 0.906 23 C -0.074 4.074 24 C -0.107 4.107 25 C -0.103 4.103 26 C -0.033 4.033 27 Cl -0.069 7.069 28 C -0.106 4.106 29 C -0.103 4.103 30 H 0.262 0.738 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.414 0.586 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.573 -23.129 -2.745 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.144 4.144 11 C -0.739 4.739 12 S 2.692 3.308 13 O -0.955 6.955 14 O -0.949 6.949 15 N -0.874 5.874 16 C 0.048 3.952 17 H 0.108 0.892 18 C -0.179 4.179 19 C -0.162 4.162 20 C -0.154 4.154 21 C -0.078 4.078 22 H 0.113 0.887 23 C -0.074 4.074 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.060 4.060 27 Cl -0.040 7.040 28 C -0.125 4.125 29 C -0.121 4.121 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.248 0.752 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.151 0.849 45 H 0.152 0.848 46 H 0.151 0.849 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.873 -22.798 -2.893 23.987 hybrid contribution -0.496 1.176 0.421 1.344 sum -7.369 -21.622 -2.472 22.976 Atomic orbital electron populations 1.69951 1.06034 1.26835 1.50396 1.25003 0.94867 0.99270 0.95109 0.86641 0.79598 0.82948 0.78750 1.20128 1.21249 1.20142 1.21204 0.93172 0.90915 1.51274 0.92483 1.19033 0.93439 0.90364 0.97692 1.21492 0.99357 0.91697 1.01871 1.30534 1.16284 1.15929 1.11148 1.05429 0.75724 0.75321 0.74307 1.93577 1.70808 1.85908 1.45198 1.93576 1.70166 1.85705 1.45488 1.55883 1.61805 1.42294 1.27388 1.21533 0.88600 0.99146 0.85883 0.89171 1.22677 0.99668 0.95426 1.00115 1.22372 0.94604 0.97468 1.01734 1.22608 0.97308 0.97753 0.97693 1.21321 0.91528 0.94303 1.00618 0.88742 1.19819 0.96863 0.97259 0.93502 1.20987 0.96735 0.95967 0.98840 1.21087 0.96015 0.98377 0.96681 1.20978 0.94034 0.95302 0.95653 1.98389 1.48507 1.58700 1.98409 1.21068 0.97639 0.96056 0.97743 1.21003 0.95647 0.98107 0.97379 0.92868 0.96177 0.96186 0.91641 0.91633 0.85764 0.85342 0.75186 0.90522 0.90305 0.91240 0.91438 0.90624 0.90922 0.84923 0.84752 0.84925 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.03 0.84 4.97 -27.88 -0.14 0.70 16 10 C -0.10 -2.14 5.16 -26.73 -0.14 -2.28 16 11 C -0.61 -9.48 5.97 37.16 0.22 -9.26 16 12 S 2.60 37.66 5.39 -107.50 -0.58 37.08 16 13 O -0.96 -16.86 18.08 -57.54 -1.04 -17.90 16 14 O -0.96 -16.44 17.82 -57.54 -1.03 -17.46 16 15 N -1.12 -11.24 5.29 -3.94 -0.02 -11.26 16 16 C 0.16 1.40 2.82 -66.81 -0.19 1.21 16 17 H 0.09 0.85 6.12 -51.93 -0.32 0.53 16 18 C -0.14 -1.18 6.60 -25.61 -0.17 -1.35 16 19 C -0.12 -0.77 6.83 -25.07 -0.17 -0.94 16 20 C -0.12 -0.69 6.27 -24.74 -0.15 -0.84 16 21 C -0.06 -0.41 2.78 -90.11 -0.25 -0.66 16 22 H 0.09 0.57 7.61 -51.93 -0.40 0.17 16 23 C -0.07 -0.64 4.90 -104.62 -0.51 -1.16 16 24 C -0.11 -0.99 8.15 -39.59 -0.32 -1.31 16 25 C -0.10 -1.10 9.83 -39.55 -0.39 -1.49 16 26 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 27 Cl -0.07 -0.84 28.96 -51.86 -1.50 -2.34 16 28 C -0.11 -1.10 9.83 -39.55 -0.39 -1.48 16 29 C -0.10 -0.92 9.68 -39.59 -0.38 -1.31 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.12 1.76 7.46 -51.93 -0.39 1.37 16 36 H 0.13 1.85 8.14 -51.92 -0.42 1.42 16 37 H 0.41 3.27 8.58 -34.48 -0.30 2.98 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.44 6.82 -51.93 -0.35 0.08 16 43 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 44 H 0.13 0.98 7.28 -52.48 -0.38 0.60 16 45 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 46 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 47 H 0.13 0.89 7.98 -52.49 -0.42 0.47 16 LS Contribution 409.57 15.07 6.17 6.17 Total: -1.00 -35.24 409.57 -13.08 -48.32 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.15 Total: 1.07 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: -3.65 Total: -34.45 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.72 Total: -37.18 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -2.07 Total: -35.36 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 37.66 SS G_CDS: -0.58 Total: 37.08 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.24 -13.08 -48.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.353 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds