Wall clock time and date at job start Tue Mar 31 2020 05:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99994 * 2 1 4 4 H 1.48496 * 109.47291 * 270.00147 * 3 2 1 5 5 H 1.48498 * 109.46712 * 30.00502 * 3 2 1 6 6 H 1.48502 * 109.46997 * 150.00032 * 3 2 1 7 7 C 1.37878 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99821 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47409 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47440 * 180.02562 * 10 9 7 12 12 S 1.81402 * 109.47297 * 180.02562 * 11 10 9 13 13 O 1.42107 * 110.53838 * 291.62183 * 12 11 10 14 14 O 1.42091 * 110.54633 * 68.37159 * 12 11 10 15 15 N 1.65600 * 104.45003 * 180.02562 * 12 11 10 16 16 C 1.46497 * 120.00176 * 64.99323 * 15 12 11 17 17 H 1.08996 * 110.01796 * 337.07133 * 16 15 12 18 18 C 1.54272 * 110.03079 * 215.68113 * 16 15 12 19 19 C 1.54964 * 104.15689 * 217.13636 * 18 16 15 20 20 C 1.54891 * 102.77764 * 37.89131 * 19 18 16 21 21 C 1.53876 * 110.03090 * 98.46745 * 16 15 12 22 22 H 1.09002 * 110.02926 * 238.56428 * 21 16 15 23 23 C 1.50696 * 110.03330 * 359.97438 * 21 16 15 24 24 C 1.38245 * 119.98773 * 66.30858 * 23 21 16 25 25 C 1.38211 * 120.01153 * 179.72779 * 24 23 21 26 26 C 1.38353 * 119.98976 * 0.54514 * 25 24 23 27 27 Cl 1.73601 * 120.01270 * 179.70442 * 26 25 24 28 28 C 1.38349 * 119.96965 * 359.73207 * 26 25 24 29 29 C 1.38210 * 119.98809 * 359.97438 * 28 26 25 30 30 H 0.97001 * 119.99906 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47392 * 59.99851 * 9 7 2 32 32 H 1.08998 * 109.47073 * 300.00052 * 9 7 2 33 33 H 1.08998 * 109.47226 * 59.99884 * 10 9 7 34 34 H 1.08998 * 109.47246 * 300.00192 * 10 9 7 35 35 H 1.09010 * 109.46959 * 299.99715 * 11 10 9 36 36 H 1.08989 * 109.47289 * 59.99816 * 11 10 9 37 37 H 0.97001 * 119.99640 * 244.99397 * 15 12 11 38 38 H 1.08998 * 110.48425 * 335.78551 * 18 16 15 39 39 H 1.08992 * 110.48298 * 98.43085 * 18 16 15 40 40 H 1.08999 * 110.72603 * 279.57531 * 19 18 16 41 41 H 1.09006 * 110.76179 * 156.22233 * 19 18 16 42 42 H 1.08999 * 110.48314 * 203.40060 * 20 19 18 43 43 H 1.08999 * 110.48913 * 80.76072 * 20 19 18 44 44 H 1.07997 * 119.99113 * 359.97438 * 24 23 21 45 45 H 1.07998 * 120.00412 * 180.27379 * 25 24 23 46 46 H 1.08005 * 120.00769 * 179.97438 * 28 26 25 47 47 H 1.08008 * 119.99046 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 16 2.6592 -6.3659 -0.0032 13 8 3.3558 -6.4255 -1.2404 14 8 3.3561 -6.4269 1.2335 15 7 1.7089 -7.7221 -0.0046 16 6 0.8496 -8.0133 -1.1548 17 1 0.6402 -7.0964 -1.7057 18 6 -0.4693 -8.6571 -0.6796 19 6 -0.7923 -9.7090 -1.7707 20 6 0.6060 -10.2700 -2.1303 21 6 1.5329 -9.0381 -2.0771 22 1 1.6543 -8.6188 -3.0759 23 6 2.8755 -9.4256 -1.5130 24 6 2.9492 -10.1246 -0.3226 25 6 4.1800 -10.4852 0.1923 26 6 5.3391 -10.1368 -0.4780 27 17 6.8857 -10.5828 0.1722 28 6 5.2649 -9.4323 -1.6664 29 6 4.0333 -9.0775 -2.1834 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5568 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.8727 -3.6047 0.8877 34 1 2.8713 -3.6039 -0.8922 35 1 0.8541 -5.0455 0.8879 36 1 0.8534 -5.0442 -0.8921 37 1 1.7212 -8.3236 0.7563 38 1 -0.3310 -9.1407 0.2874 39 1 -1.2603 -7.9093 -0.6236 40 1 -1.2535 -9.2363 -2.6378 41 1 -1.4330 -10.4955 -1.3717 42 1 0.5987 -10.6990 -3.1323 43 1 0.9184 -11.0144 -1.3979 44 1 2.0445 -10.3924 0.2031 45 1 4.2372 -11.0351 1.1201 46 1 6.1694 -9.1596 -2.1900 47 1 3.9754 -8.5272 -3.1110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:37 Heat of formation + Delta-G solvation = -76.760406 kcal Electronic energy + Delta-G solvation = -29909.490994 eV Core-core repulsion = 25823.057528 eV Total energy + Delta-G solvation = -4086.433466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 371.111 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.40982 -38.17415 -36.80047 -36.44806 -35.67565 -34.68784 -33.64237 -32.20907 -31.80628 -31.17639 -27.85913 -27.82215 -27.25208 -23.75578 -23.13331 -22.49278 -21.12233 -20.68181 -20.07525 -19.16537 -17.55222 -17.36010 -16.67321 -16.52511 -16.14140 -15.65763 -15.41903 -15.22772 -14.78923 -14.50057 -14.42220 -14.00065 -13.86257 -13.63093 -13.50898 -13.07281 -12.81114 -12.60018 -12.37382 -12.27958 -11.91895 -11.79403 -11.76187 -11.72830 -11.48403 -11.34138 -11.33153 -11.18891 -11.09540 -11.05276 -10.99113 -10.91901 -10.85320 -10.79159 -10.42384 -9.97171 -9.72921 -9.34011 -9.12269 -9.04061 -8.60896 -8.42319 -6.07328 -4.10367 0.48590 1.03537 1.21814 2.03695 2.87064 3.29454 3.35594 3.39921 3.49809 3.96419 4.16403 4.25767 4.39672 4.41345 4.47739 4.67528 4.77292 4.84590 4.91559 5.08689 5.11397 5.14828 5.18786 5.20420 5.26059 5.27613 5.29198 5.37424 5.48456 5.55839 5.59550 5.72455 5.81680 5.82259 5.86486 5.99328 6.01154 6.12494 6.19805 6.24503 6.42758 6.47252 6.69950 6.84845 6.90980 7.54823 7.64677 7.90682 8.31241 8.95855 9.54489 11.03916 Molecular weight = 371.11amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.002612 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.791260 B =10719.127993 C =12541.473677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.613 4.613 12 S 2.594 3.406 13 O -0.952 6.952 14 O -0.963 6.963 15 N -1.115 6.115 16 C 0.157 3.843 17 H 0.093 0.907 18 C -0.131 4.131 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.068 4.068 22 H 0.092 0.908 23 C -0.056 4.056 24 C -0.106 4.106 25 C -0.117 4.117 26 C -0.039 4.039 27 Cl -0.079 7.079 28 C -0.110 4.110 29 C -0.076 4.076 30 H 0.262 0.738 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.413 0.587 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 -26.519 -3.840 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.144 4.144 11 C -0.744 4.744 12 S 2.689 3.311 13 O -0.941 6.941 14 O -0.953 6.953 15 N -0.872 5.872 16 C 0.049 3.951 17 H 0.111 0.889 18 C -0.170 4.170 19 C -0.163 4.163 20 C -0.156 4.156 21 C -0.089 4.089 22 H 0.110 0.890 23 C -0.056 4.056 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.066 4.066 27 Cl -0.050 7.050 28 C -0.129 4.129 29 C -0.094 4.094 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.248 0.752 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.366 -26.322 -3.923 26.648 hybrid contribution -0.104 1.011 0.470 1.120 sum 1.262 -25.311 -3.453 25.577 Atomic orbital electron populations 1.69955 1.06095 1.26790 1.50621 1.25017 0.94887 0.99372 0.95074 0.86558 0.79917 0.83159 0.78215 1.20541 1.21150 1.19708 1.21256 0.93265 0.90897 1.51054 0.92373 1.19056 0.93509 0.90471 0.97678 1.21482 0.99358 0.91700 1.01891 1.30601 1.16560 1.16280 1.10999 1.05512 0.75768 0.75228 0.74576 1.93573 1.69814 1.85541 1.45205 1.93579 1.70594 1.85861 1.45281 1.55965 1.62006 1.42055 1.27174 1.21420 0.89271 0.98553 0.85892 0.88850 1.22745 0.96211 0.98713 0.99306 1.22501 0.96856 0.98238 0.98698 1.22527 0.94182 0.96697 1.02151 1.21302 0.91681 0.96142 0.99735 0.89010 1.19657 0.94614 0.96671 0.94670 1.20899 0.96861 0.98820 0.95888 1.20983 0.91006 1.01290 1.00311 1.20919 0.86495 1.02656 0.96484 1.98360 1.28913 1.91642 1.86108 1.21054 0.98996 0.98074 0.94755 1.21018 0.90871 0.97185 1.00358 0.92888 0.96160 0.96152 0.91713 0.91603 0.85466 0.85711 0.75156 0.90560 0.90373 0.90926 0.91100 0.91204 0.90960 0.85366 0.85199 0.85114 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 10 C -0.10 -2.13 5.16 -26.73 -0.14 -2.27 16 11 C -0.61 -9.33 5.97 37.16 0.22 -9.11 16 12 S 2.59 37.47 5.34 -107.50 -0.57 36.89 16 13 O -0.95 -15.36 15.74 -57.54 -0.91 -16.27 16 14 O -0.96 -17.28 18.08 -57.54 -1.04 -18.32 16 15 N -1.11 -11.13 3.41 -3.94 -0.01 -11.14 16 16 C 0.16 1.28 3.26 -66.81 -0.22 1.06 16 17 H 0.09 0.74 7.23 -51.93 -0.38 0.37 16 18 C -0.13 -0.80 6.54 -25.03 -0.16 -0.97 16 19 C -0.12 -0.66 6.91 -24.70 -0.17 -0.83 16 20 C -0.12 -0.71 6.23 -25.07 -0.16 -0.86 16 21 C -0.07 -0.55 3.13 -90.66 -0.28 -0.83 16 22 H 0.09 0.72 7.93 -51.93 -0.41 0.31 16 23 C -0.06 -0.55 3.48 -104.62 -0.36 -0.91 16 24 C -0.11 -0.98 6.77 -39.59 -0.27 -1.25 16 25 C -0.12 -1.22 9.83 -39.55 -0.39 -1.60 16 26 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 27 Cl -0.08 -0.89 28.96 -51.86 -1.50 -2.39 16 28 C -0.11 -1.29 9.83 -39.55 -0.39 -1.68 16 29 C -0.08 -0.86 8.20 -39.59 -0.32 -1.19 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 36 H 0.12 1.64 7.49 -51.93 -0.39 1.25 16 37 H 0.41 3.54 7.15 -34.47 -0.25 3.29 16 38 H 0.08 0.42 7.84 -51.93 -0.41 0.01 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 44 H 0.13 0.87 6.99 -52.49 -0.37 0.51 16 45 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 47 H 0.13 1.41 7.98 -52.48 -0.42 0.99 16 LS Contribution 401.33 15.07 6.05 6.05 Total: -1.00 -34.55 401.33 -12.85 -47.40 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.14 Total: 1.11 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: -3.44 Total: -34.11 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.72 Total: -36.90 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.95 Total: -34.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 37.47 SS G_CDS: -0.57 Total: 36.89 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.55 -12.85 -47.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.359 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds