Wall clock time and date at job start Tue Mar 31 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31644 * 1 3 3 Si 1.86803 * 120.00174 * 2 1 4 4 H 1.48495 * 109.47136 * 269.99916 * 3 2 1 5 5 H 1.48503 * 109.47091 * 30.00113 * 3 2 1 6 6 H 1.48500 * 109.47019 * 149.99963 * 3 2 1 7 7 C 1.38687 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99849 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00121 * 359.97438 * 7 2 1 10 10 C 1.76199 * 100.00028 * 174.96721 * 9 7 2 11 11 C 1.39000 * 120.12561 * 5.61666 * 10 9 7 12 12 C 1.38084 * 119.97554 * 180.27779 * 11 10 9 13 13 C 1.38396 * 120.22878 * 359.69600 * 12 11 10 14 14 C 1.38223 * 120.25000 * 0.03031 * 13 12 11 15 15 C 1.38680 * 120.01941 * 359.97438 * 14 13 12 16 16 N 1.39930 * 120.11295 * 179.97438 * 15 14 13 17 17 C 1.34776 * 120.00114 * 335.24134 * 16 15 14 18 18 O 1.21300 * 119.99987 * 354.26515 * 17 16 15 19 19 C 1.50705 * 120.00261 * 174.25882 * 17 16 15 20 20 N 1.46899 * 109.47314 * 180.02562 * 19 17 16 21 21 C 1.48562 * 111.00134 * 285.42306 * 20 19 17 22 22 C 1.54377 * 104.59403 * 200.95976 * 21 20 19 23 23 C 1.54258 * 105.06073 * 23.85104 * 22 21 20 24 24 C 1.48557 * 110.99956 * 170.00285 * 20 19 17 25 25 H 1.08992 * 110.51247 * 40.21342 * 24 20 19 26 26 C 1.50701 * 110.40980 * 277.81747 * 24 20 19 27 27 C 1.34850 * 125.89576 * 328.07048 * 26 24 20 28 28 C 1.40884 * 107.41784 * 179.88597 * 27 26 24 29 29 C 1.34850 * 107.42010 * 0.37338 * 28 27 26 30 30 N 1.36343 * 108.21644 * 359.77008 * 29 28 27 31 31 H 0.97000 * 125.63176 * 179.97438 * 30 29 28 32 32 H 0.97006 * 119.99972 * 359.97438 * 1 2 3 33 33 H 1.07998 * 120.01080 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.88439 * 179.72726 * 12 11 10 35 35 H 1.07994 * 119.87167 * 180.02562 * 13 12 11 36 36 H 1.07997 * 119.98800 * 180.02562 * 14 13 12 37 37 H 0.96999 * 120.00180 * 155.24554 * 16 15 14 38 38 H 1.09007 * 109.46680 * 60.00413 * 19 17 16 39 39 H 1.08997 * 109.47121 * 300.00838 * 19 17 16 40 40 H 1.08999 * 110.40853 * 82.17904 * 21 20 19 41 41 H 1.08997 * 110.40962 * 319.73844 * 21 20 19 42 42 H 1.09009 * 110.32323 * 264.95419 * 22 21 20 43 43 H 1.08998 * 110.40963 * 142.79641 * 22 21 20 44 44 H 1.09004 * 110.32537 * 241.10434 * 23 22 21 45 45 H 1.09002 * 110.40911 * 118.94553 * 23 22 21 46 46 H 1.08006 * 126.28617 * 0.02562 * 27 26 24 47 47 H 1.08006 * 126.29173 * 180.12684 * 28 27 26 48 48 H 1.08001 * 125.89321 * 179.73942 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 2.4980 2.0464 -1.4000 5 1 1.4480 2.6527 0.7001 6 1 3.5480 1.4401 0.7001 7 6 2.0098 -1.2011 -0.0005 8 1 3.0899 -1.2011 -0.0010 9 16 1.1288 -2.7270 -0.0005 10 6 2.4727 -3.8563 -0.1535 11 6 3.7822 -3.3916 -0.1152 12 6 4.8330 -4.2786 -0.2412 13 6 4.5877 -5.6314 -0.3994 14 6 3.2894 -6.1044 -0.4331 15 6 2.2263 -5.2227 -0.3077 16 7 0.9111 -5.6994 -0.3421 17 6 0.6306 -6.8586 -0.9698 18 8 1.4966 -7.4358 -1.5930 19 6 -0.7587 -7.4379 -0.8972 20 7 -0.8056 -8.6946 -1.6565 21 6 -0.8062 -8.4334 -3.1190 22 6 -1.3879 -9.7197 -3.7436 23 6 -2.2269 -10.3660 -2.6220 24 6 -2.0815 -9.4158 -1.4140 25 1 -2.9156 -8.7151 -1.3791 26 6 -2.0043 -10.2038 -0.1318 27 6 -0.8945 -10.7731 0.3808 28 6 -1.2626 -11.4059 1.5845 29 6 -2.5850 -11.2064 1.7575 30 7 -3.0458 -10.4691 0.7072 31 1 -3.9631 -10.1814 0.5781 32 1 -0.4850 0.8401 0.0004 33 1 3.9776 -2.3366 0.0081 34 1 5.8498 -3.9154 -0.2156 35 1 5.4139 -6.3200 -0.4970 36 1 3.1028 -7.1610 -0.5564 37 1 0.2012 -5.1955 0.0858 38 1 -1.4703 -6.7296 -1.3219 39 1 -1.0173 -7.6327 0.1436 40 1 0.2099 -8.2636 -3.4752 41 1 -1.4396 -7.5775 -3.3520 42 1 -0.5838 -10.3895 -4.0489 43 1 -2.0206 -9.4754 -4.5969 44 1 -1.8347 -11.3530 -2.3767 45 1 -3.2720 -10.4388 -2.9229 46 1 0.0952 -10.7465 -0.0510 47 1 -0.6070 -11.9539 2.2451 48 1 -3.1770 -11.5685 2.5850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096443278.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:03 Heat of formation + Delta-G solvation = 55.126435 kcal Electronic energy + Delta-G solvation = -30476.967895 eV Core-core repulsion = 26430.979072 eV Total energy + Delta-G solvation = -4045.988823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.32130 -40.15249 -38.75886 -37.46503 -34.29412 -32.76722 -32.56724 -31.00489 -30.83623 -30.28788 -29.21825 -27.02254 -26.40273 -25.86277 -22.57402 -22.20598 -21.67675 -21.21273 -20.64903 -19.93384 -19.72601 -18.37365 -17.94747 -16.93246 -16.57654 -16.17259 -15.75513 -15.44434 -15.08503 -15.04389 -14.51610 -14.27351 -14.13194 -13.84956 -13.69584 -13.56797 -13.23131 -13.05201 -12.90970 -12.75570 -12.44718 -12.29603 -12.24723 -12.09994 -11.77308 -11.65766 -11.37804 -11.35367 -11.30083 -11.23195 -11.06073 -10.71543 -10.38918 -10.07948 -9.81460 -9.55123 -9.31634 -8.89313 -8.78998 -8.66140 -8.61274 -8.09753 -7.60786 -6.53546 -6.50894 -4.23923 1.89776 2.12528 2.13121 2.92253 2.96882 3.01559 3.06035 3.09598 3.16153 3.26625 3.40897 3.96440 3.99117 4.43004 4.45517 4.50098 4.71260 4.80285 4.89973 4.93066 4.99814 5.07749 5.11386 5.13981 5.24990 5.35374 5.44958 5.49912 5.62886 5.68276 5.70097 5.71242 5.79360 5.93009 5.95742 6.01531 6.19768 6.21431 6.26397 6.35905 6.59535 6.61280 6.67325 6.88999 6.95650 7.00464 7.11972 7.15993 7.25616 7.45653 7.46850 7.72662 7.83512 8.13109 8.46877 8.95390 10.53908 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.011856 B = 0.002244 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.184104 B =12477.084520 C =13028.546621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.077 3.923 3 Si 0.924 3.076 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.542 4.542 8 H 0.095 0.905 9 S 0.025 5.975 10 C -0.107 4.107 11 C -0.128 4.128 12 C -0.119 4.119 13 C -0.145 4.145 14 C -0.112 4.112 15 C 0.130 3.870 16 N -0.659 5.659 17 C 0.515 3.485 18 O -0.508 6.508 19 C 0.026 3.974 20 N -0.473 5.473 21 C 0.032 3.968 22 C -0.122 4.122 23 C -0.113 4.113 24 C 0.133 3.867 25 H 0.056 0.944 26 C 0.016 3.984 27 C -0.160 4.160 28 C -0.205 4.205 29 C -0.017 4.017 30 N -0.560 5.560 31 H 0.409 0.591 32 H 0.273 0.727 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.410 0.590 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.140 0.860 47 H 0.132 0.868 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 -19.412 -1.294 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.133 4.133 3 Si 0.750 3.250 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.690 4.690 8 H 0.112 0.888 9 S 0.279 5.721 10 C -0.224 4.224 11 C -0.154 4.154 12 C -0.140 4.140 13 C -0.168 4.168 14 C -0.133 4.133 15 C 0.028 3.972 16 N -0.303 5.303 17 C 0.302 3.698 18 O -0.382 6.382 19 C -0.105 4.105 20 N -0.197 5.197 21 C -0.095 4.095 22 C -0.161 4.161 23 C -0.151 4.151 24 C 0.024 3.976 25 H 0.074 0.926 26 C -0.096 4.096 27 C -0.185 4.185 28 C -0.230 4.230 29 C -0.148 4.148 30 N -0.156 5.156 31 H 0.245 0.755 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.155 0.845 37 H 0.246 0.754 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.158 0.842 47 H 0.150 0.850 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.943 -19.994 -1.477 21.565 hybrid contribution 0.325 2.272 0.042 2.295 sum -7.618 -17.722 -1.435 19.343 Atomic orbital electron populations 1.69995 1.06079 1.28209 1.45760 1.25082 0.95166 0.99604 0.93447 0.86052 0.79590 0.80665 0.78720 1.19906 1.20533 1.19197 1.23251 0.95876 0.90385 1.59440 0.88750 1.83009 1.06296 0.97887 1.84920 1.22427 1.00586 0.95507 1.03920 1.21276 0.90992 1.00639 1.02525 1.20959 0.98177 0.93494 1.01389 1.20768 0.95893 0.95286 1.04900 1.21101 0.91224 0.99825 1.01181 1.17187 0.83467 0.90947 1.05599 1.43391 1.08852 1.23276 1.54819 1.20365 0.90333 0.80452 0.78694 1.90638 1.47971 1.59587 1.40008 1.22135 0.94784 0.92083 1.01540 1.64905 1.31699 1.17732 1.05392 1.23231 1.02702 0.96497 0.87081 1.22289 0.99473 0.96900 0.97388 1.22331 0.99966 0.99374 0.93469 1.20880 0.91655 0.94159 0.90933 0.92649 1.19900 0.88203 1.06403 0.95071 1.20742 0.98287 1.02537 0.96924 1.20989 0.94725 1.07262 1.00060 1.21764 0.96035 1.02960 0.94021 1.41893 1.10017 1.44211 1.19482 0.75511 0.91743 0.84483 0.87166 0.87018 0.84451 0.75388 0.91322 0.87588 0.88369 0.93782 0.90616 0.91276 0.90298 0.91363 0.84230 0.84976 0.82213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.81 13.22 55.48 0.73 -23.07 16 2 C 0.08 2.03 5.49 -17.47 -0.10 1.93 16 3 Si 0.92 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.54 -14.37 9.08 30.90 0.28 -14.09 16 8 H 0.09 2.41 4.81 -52.49 -0.25 2.16 16 9 S 0.03 0.62 20.37 -107.50 -2.19 -1.57 16 10 C -0.11 -2.36 6.12 -38.75 -0.24 -2.60 16 11 C -0.13 -2.72 9.26 -39.36 -0.36 -3.08 16 12 C -0.12 -2.19 10.03 -39.58 -0.40 -2.58 16 13 C -0.14 -2.57 10.04 -39.53 -0.40 -2.96 16 14 C -0.11 -2.13 8.71 -39.42 -0.34 -2.47 16 15 C 0.13 2.60 6.44 -83.45 -0.54 2.06 16 16 N -0.66 -11.35 5.16 -9.70 -0.05 -11.40 16 17 C 0.52 8.20 7.48 -10.98 -0.08 8.11 16 18 O -0.51 -9.33 12.40 5.54 0.07 -9.26 16 19 C 0.03 0.32 5.27 -4.97 -0.03 0.29 16 20 N -0.47 -5.50 4.30 -224.94 -0.97 -6.46 16 21 C 0.03 0.36 5.92 -2.18 -0.01 0.34 16 22 C -0.12 -1.05 7.00 -25.35 -0.18 -1.23 16 23 C -0.11 -0.93 6.54 -25.35 -0.17 -1.09 16 24 C 0.13 1.25 2.78 -67.22 -0.19 1.07 16 25 H 0.06 0.47 8.00 -51.93 -0.42 0.05 16 26 C 0.02 0.16 5.75 -81.79 -0.47 -0.31 16 27 C -0.16 -1.91 10.35 -39.78 -0.41 -2.32 16 28 C -0.21 -2.18 10.86 -39.78 -0.43 -2.62 16 29 C -0.02 -0.15 11.94 -16.75 -0.20 -0.35 16 30 N -0.56 -4.60 6.07 -9.12 -0.06 -4.65 16 31 H 0.41 2.20 8.96 -40.82 -0.37 1.83 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.14 2.99 4.93 -52.49 -0.26 2.73 16 34 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.14 2.61 5.79 -52.49 -0.30 2.30 16 37 H 0.41 6.61 7.66 -40.82 -0.31 6.29 16 38 H 0.07 0.74 7.77 -51.93 -0.40 0.33 16 39 H 0.11 1.21 7.78 -51.93 -0.40 0.80 16 40 H 0.10 1.30 7.24 -51.93 -0.38 0.92 16 41 H 0.04 0.46 7.75 -51.93 -0.40 0.06 16 42 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 47 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 48 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -31.37 403.02 -12.09 -43.46 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.42 Total: 13.58 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -4.26 Total: -21.88 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.34 Total: -45.59 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.07 Total: -9.26 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.19 Total: -1.57 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.37 -12.09 -43.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096443278.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.587 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds