Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86797 * 120.00520 * 2 1 4 4 H 1.48497 * 109.46920 * 239.99863 * 3 2 1 5 5 H 1.48508 * 109.46783 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47162 * 119.99656 * 3 2 1 7 7 C 1.39872 * 119.99374 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99765 * 197.95169 * 7 2 1 9 9 C 1.41139 * 120.00204 * 17.95554 * 7 2 1 10 10 C 1.40886 * 120.15304 * 204.60122 * 9 7 2 11 11 C 1.36340 * 119.83118 * 180.02562 * 10 9 7 12 12 C 1.39557 * 120.16484 * 359.97438 * 11 10 9 13 13 N 1.38859 * 119.84334 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00132 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47296 * 180.02562 * 14 13 12 16 16 C 1.35114 * 126.40986 * 95.02149 * 15 14 13 17 17 N 1.33516 * 108.62221 * 180.02562 * 16 15 14 18 18 C 1.32577 * 109.15634 * 359.97438 * 17 16 15 19 19 C 1.40926 * 132.30897 * 179.97438 * 18 17 16 20 20 C 1.36019 * 119.34178 * 180.02562 * 19 18 17 21 21 C 1.40533 * 119.68866 * 0.02562 * 20 19 18 22 22 Br 1.89106 * 119.85771 * 180.02562 * 21 20 19 23 23 C 1.35023 * 120.28402 * 359.97438 * 21 20 19 24 24 N 1.36522 * 120.59206 * 359.71543 * 23 21 20 25 25 C 1.39571 * 120.31506 * 0.25390 * 12 11 10 26 26 C 1.36343 * 120.16010 * 359.48498 * 25 12 11 27 27 H 0.97005 * 119.99193 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.08085 * 359.97438 * 10 9 7 29 29 H 1.08010 * 119.91382 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00193 * 0.02562 * 13 12 11 31 31 H 1.09007 * 109.47283 * 59.99630 * 14 13 12 32 32 H 1.09001 * 109.47100 * 300.00053 * 14 13 12 33 33 H 1.07994 * 125.69083 * 359.97312 * 16 15 14 34 34 H 1.07998 * 120.32969 * 359.97438 * 19 18 17 35 35 H 1.08003 * 120.15261 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.70411 * 180.02562 * 23 21 20 37 37 H 1.08000 * 119.91781 * 179.71529 * 25 12 11 38 38 H 1.07994 * 120.08152 * 180.22941 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 3.0970 1.6962 -1.2125 5 1 1.2782 2.7464 -0.0006 6 1 3.0969 1.6963 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0488 -1.2341 0.2888 9 6 1.3541 -2.4041 -0.3757 10 6 1.8265 -3.6473 0.0891 11 6 1.1898 -4.7954 -0.2789 12 6 0.0725 -4.7411 -1.1134 13 7 -0.5705 -5.9145 -1.4845 14 6 -1.7433 -5.8616 -2.3608 15 6 -2.2489 -7.2594 -2.6084 16 6 -3.2317 -7.8891 -1.9280 17 7 -3.3901 -9.1115 -2.4413 18 6 -2.5308 -9.2800 -3.4367 19 6 -2.2811 -10.3648 -4.3009 20 6 -1.3146 -10.2511 -5.2512 21 6 -0.5802 -9.0577 -5.3578 22 35 0.7641 -8.8942 -6.6778 23 6 -0.8309 -8.0270 -4.5224 24 7 -1.8026 -8.1263 -3.5686 25 6 -0.3982 -3.5133 -1.5815 26 6 0.2253 -2.3568 -1.2174 27 1 -0.4849 0.8402 -0.0004 28 1 2.6912 -3.6908 0.7346 29 1 1.5511 -5.7493 0.0763 30 1 -0.2432 -6.7693 -1.1635 31 1 -1.4676 -5.4011 -3.3095 32 1 -2.5264 -5.2715 -1.8845 33 1 -3.7948 -7.4734 -1.1055 34 1 -2.8509 -11.2776 -4.2090 35 1 -1.1121 -11.0744 -5.9202 36 1 -0.2611 -7.1140 -4.6129 37 1 -1.2606 -3.4791 -2.2307 38 1 -0.1422 -1.4072 -1.5774 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097049493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = 120.229349 kcal Electronic energy + Delta-G solvation = -23351.276171 eV Core-core repulsion = 19819.972841 eV Total energy + Delta-G solvation = -3531.303330 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 371.033 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.16414 -38.14058 -37.79500 -35.39598 -34.00062 -33.02613 -32.33307 -30.30598 -29.51895 -29.18053 -28.31289 -25.98165 -24.13557 -23.65251 -22.71736 -21.68525 -20.88514 -20.01891 -17.82003 -17.25590 -17.09870 -16.54548 -16.25037 -15.88149 -15.16262 -15.03130 -14.86859 -13.93738 -13.87941 -13.60315 -13.40925 -12.92620 -12.79691 -12.66675 -12.61949 -12.22936 -11.88906 -11.71743 -11.47481 -11.34368 -11.04524 -10.93215 -10.80968 -10.78274 -10.53714 -10.34371 -9.76840 -9.36411 -9.29756 -9.01922 -8.62508 -8.14611 -7.55707 -6.69598 -6.47921 -4.08899 0.26520 0.75243 0.93325 2.32618 2.44977 2.88517 3.04667 3.11756 3.12832 3.14875 3.31097 3.85119 4.01929 4.11034 4.21696 4.34337 4.49654 4.70716 4.77880 4.87847 5.13922 5.26243 5.40239 5.52872 5.68251 5.75686 5.84159 6.08765 6.19882 6.24624 6.33953 6.63610 6.81748 6.87888 7.14491 7.30467 7.47079 7.54276 7.62764 7.76730 8.09664 8.21198 8.40664 8.58826 8.72722 9.01092 9.09154 10.32515 Molecular weight = 371.03amu Principal moments of inertia in cm(-1) A = 0.012927 B = 0.002217 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.417846 B =12625.059370 C =14155.421804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.077 3.923 10 C -0.187 4.187 11 C -0.153 4.153 12 C 0.086 3.914 13 N -0.760 5.760 14 C 0.217 3.783 15 C -0.063 4.063 16 C 0.055 3.945 17 N -0.486 5.486 18 C 0.222 3.778 19 C -0.069 4.069 20 C -0.085 4.085 21 C -0.124 4.124 22 Br -0.013 7.013 23 C 0.111 3.889 24 N -0.355 5.355 25 C -0.162 4.162 26 C -0.126 4.126 27 H 0.277 0.723 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.385 0.615 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.187 0.813 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.174 0.826 37 H 0.087 0.913 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.587 -18.461 -13.674 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.075 3.925 10 C -0.208 4.208 11 C -0.175 4.175 12 C -0.010 4.010 13 N -0.397 5.397 14 C 0.091 3.909 15 C -0.175 4.175 16 C -0.096 4.096 17 N -0.205 5.205 18 C -0.021 4.021 19 C -0.089 4.089 20 C -0.110 4.110 21 C -0.207 4.207 22 Br 0.071 6.929 23 C -0.015 4.015 24 N -0.028 5.028 25 C -0.184 4.184 26 C -0.146 4.146 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.217 0.783 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.204 0.796 34 H 0.177 0.823 35 H 0.168 0.832 36 H 0.191 0.809 37 H 0.106 0.894 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.012 -18.619 -13.936 23.600 hybrid contribution 0.739 1.082 0.229 1.330 sum -3.273 -17.537 -13.707 22.498 Atomic orbital electron populations 1.69847 1.07371 1.28816 1.37227 1.25807 0.94672 1.00932 0.92650 0.86452 0.80146 0.80764 0.79779 1.19068 1.20543 1.19224 1.19355 0.97951 0.91374 1.41102 0.90927 1.17500 0.92320 0.91975 0.90750 1.20546 1.02765 0.92568 1.04894 1.19795 0.97706 0.97065 1.02963 1.17286 0.95970 0.85278 1.02489 1.43907 1.32351 1.06212 1.57220 1.19300 0.89728 0.87028 0.94892 1.21559 1.03946 0.96205 0.95781 1.22476 0.97004 0.90074 1.00075 1.70823 1.22159 1.18382 1.09119 1.21043 0.94060 0.88020 0.98994 1.20242 0.98604 0.96905 0.93197 1.20909 0.94801 0.96463 0.98812 1.21119 1.01948 0.97256 1.00391 1.96815 1.48185 1.98304 1.49599 1.21606 0.91047 1.00396 0.88464 1.42751 1.24058 1.13861 1.22092 1.20074 1.01570 0.91897 1.04848 1.20929 0.98245 0.96436 0.98943 0.91192 0.89005 0.89663 0.78275 0.92737 0.90322 0.79620 0.82341 0.83168 0.80909 0.89440 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.01 10.96 55.54 0.61 -20.40 16 2 C 0.07 1.90 5.13 -17.33 -0.09 1.81 16 3 Si 0.90 18.95 29.60 -169.99 -5.03 13.92 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.47 -12.47 9.03 -37.87 -0.34 -12.82 16 8 H 0.07 1.87 7.91 -52.49 -0.41 1.46 16 9 C 0.08 2.05 5.57 -106.79 -0.60 1.45 16 10 C -0.19 -4.55 9.74 -39.26 -0.38 -4.93 16 11 C -0.15 -3.35 9.82 -39.77 -0.39 -3.74 16 12 C 0.09 1.78 6.67 -83.69 -0.56 1.23 16 13 N -0.76 -12.52 5.69 -59.68 -0.34 -12.86 16 14 C 0.22 3.02 5.32 -5.20 -0.03 2.99 16 15 C -0.06 -0.81 6.40 -81.47 -0.52 -1.33 16 16 C 0.06 0.70 11.75 -17.93 -0.21 0.49 16 17 N -0.49 -6.64 11.32 -12.78 -0.14 -6.78 16 18 C 0.22 2.73 7.81 -156.04 -1.22 1.51 16 19 C -0.07 -0.62 10.11 -39.36 -0.40 -1.01 16 20 C -0.08 -0.67 9.82 -39.51 -0.39 -1.05 16 21 C -0.12 -1.14 6.19 -39.86 -0.25 -1.38 16 22 Br -0.01 -0.11 33.68 -68.01 -2.29 -2.40 16 23 C 0.11 1.18 10.56 -16.61 -0.18 1.01 16 24 N -0.35 -4.32 2.95 -58.44 -0.17 -4.49 16 25 C -0.16 -3.61 9.23 -39.77 -0.37 -3.98 16 26 C -0.13 -3.19 8.64 -39.26 -0.34 -3.53 16 27 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 28 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 29 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.38 6.03 8.46 -40.82 -0.35 5.68 16 31 H 0.05 0.76 7.92 -51.93 -0.41 0.35 16 32 H 0.08 1.09 7.94 -51.93 -0.41 0.68 16 33 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.09 1.75 6.68 -52.49 -0.35 1.40 16 38 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -28.92 348.99 -12.29 -41.21 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -3.93 Total: 9.83 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -6.25 Total: -23.29 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.05 Total: -44.53 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -2.29 Total: -2.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.92 -12.29 -41.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097049493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.440 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds