Wall clock time and date at job start Tue Mar 31 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47248 * 2 1 4 4 H 1.08996 * 109.47324 * 54.99444 * 3 2 1 5 5 C 1.50694 * 109.47312 * 174.99946 * 3 2 1 6 6 H 1.08000 * 120.00513 * 119.72048 * 5 3 2 7 7 C 1.37880 * 119.99785 * 300.00028 * 5 3 2 8 8 N 1.31518 * 119.99643 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00034 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.46723 * 90.00291 * 9 7 5 11 11 H 1.48495 * 109.47231 * 210.00104 * 9 7 5 12 12 H 1.48500 * 109.47246 * 330.00496 * 9 7 5 13 13 N 1.46503 * 109.46966 * 295.00046 * 3 2 1 14 14 C 1.34773 * 120.00447 * 85.00165 * 13 3 2 15 15 O 1.21589 * 120.00072 * 359.97438 * 14 13 3 16 16 N 1.34780 * 120.00211 * 180.02562 * 14 13 3 17 17 C 1.39980 * 119.99883 * 174.69125 * 16 14 13 18 18 C 1.38878 * 120.05932 * 326.56173 * 17 16 14 19 19 C 1.38098 * 119.93916 * 179.77254 * 18 17 16 20 20 C 1.38382 * 120.05883 * 0.50824 * 19 18 17 21 21 Br 1.89100 * 119.94050 * 179.72572 * 20 19 18 22 22 C 1.38337 * 120.11682 * 359.74864 * 20 19 18 23 23 N 1.48016 * 119.96584 * 180.02562 * 22 20 19 24 24 O 1.21800 * 119.99919 * 179.97438 * 23 22 20 25 25 O 1.21795 * 120.00117 * 359.97438 * 23 22 20 26 26 C 1.38127 * 120.06187 * 359.97438 * 22 20 19 27 27 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47083 * 300.00870 * 1 2 3 29 29 H 1.09005 * 109.47097 * 60.00269 * 1 2 3 30 30 H 1.08997 * 109.47190 * 239.99868 * 2 1 3 31 31 H 1.09001 * 109.46629 * 119.99768 * 2 1 3 32 32 H 0.97000 * 119.99524 * 179.97438 * 8 7 5 33 33 H 0.97004 * 119.99551 * 264.99921 * 13 3 2 34 34 H 0.96999 * 119.99976 * 354.68826 * 16 14 13 35 35 H 1.08002 * 120.03256 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.97177 * 180.25924 * 19 18 17 37 37 H 1.08011 * 120.03013 * 179.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1474 1.8848 -0.6544 7 6 4.1432 0.8784 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0962 0.1101 2.5707 10 1 2.8744 -1.3260 2.2646 11 1 3.7939 0.2360 3.8755 12 1 1.7880 0.8094 2.6394 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3671 15 8 -0.3415 2.6319 -0.4322 16 7 0.0785 3.2665 -2.5189 17 6 -1.2228 3.7571 -2.6784 18 6 -2.2914 3.1020 -2.0805 19 6 -3.5736 3.5908 -2.2356 20 6 -3.7954 4.7264 -2.9946 21 35 -5.5534 5.3885 -3.2112 22 6 -2.7333 5.3779 -3.5957 23 7 -2.9742 6.5926 -4.4064 24 8 -2.0395 7.1670 -4.9355 25 8 -4.1072 7.0178 -4.5445 26 6 -1.4481 4.8965 -3.4391 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8770 0.4817 2.1128 33 1 2.2720 2.1231 -1.9978 34 1 0.7235 3.3599 -3.2374 35 1 -2.1194 2.2133 -1.4913 36 1 -4.4045 3.0841 -1.7673 37 1 -0.6193 5.4053 -3.9090 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:58 Heat of formation + Delta-G solvation = 21.744895 kcal Electronic energy + Delta-G solvation = -25076.273329 eV Core-core repulsion = 21097.557378 eV Total energy + Delta-G solvation = -3978.715951 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 371.031 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.38137 -40.89244 -39.17183 -36.75366 -36.13283 -34.86512 -32.82448 -32.30863 -32.16507 -31.39429 -29.16097 -27.55746 -26.65555 -23.45107 -23.34599 -22.63136 -21.41978 -20.15068 -19.44010 -19.02536 -18.57554 -17.73291 -17.04960 -16.60570 -16.49193 -16.06057 -15.46016 -15.08157 -14.72896 -14.44543 -13.97843 -13.67112 -13.28480 -12.82944 -12.74198 -12.45115 -12.30849 -12.18069 -11.97979 -11.69329 -11.50440 -11.28974 -11.21115 -11.10198 -10.80715 -10.42547 -10.12931 -10.08321 -9.85622 -9.76877 -9.58572 -9.40829 -8.93091 -8.68816 -8.30122 -6.34546 -4.38758 -0.46749 0.38813 0.88731 1.11345 1.20165 2.52434 2.75500 3.12283 3.25855 3.28133 3.36022 3.88447 4.18127 4.22899 4.35927 4.41717 4.63665 4.92610 4.98480 4.98574 5.35833 5.56502 5.70763 5.79091 5.84997 5.97110 6.12042 6.32472 6.38269 6.51773 6.57900 6.69808 6.81249 7.04415 7.18528 7.31444 7.47927 8.02783 8.31652 8.59856 8.70798 9.24513 10.77291 Molecular weight = 371.03amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.002304 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.813161 B =12150.702131 C =13029.536480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.259 3.741 4 H 0.052 0.948 5 C -0.541 4.541 6 H 0.081 0.919 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.702 5.702 14 C 0.695 3.305 15 O -0.574 6.574 16 N -0.690 5.690 17 C 0.207 3.793 18 C -0.069 4.069 19 C -0.067 4.067 20 C -0.073 4.073 21 Br 0.009 6.991 22 C -0.002 4.002 23 N 0.026 4.974 24 O -0.167 6.167 25 O -0.132 6.132 26 C -0.091 4.091 27 H 0.033 0.967 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.269 0.731 33 H 0.396 0.604 34 H 0.412 0.588 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.472 5.041 -11.093 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C 0.155 3.845 4 H 0.070 0.930 5 C -0.578 4.578 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.353 5.353 14 C 0.395 3.605 15 O -0.451 6.451 16 N -0.338 5.338 17 C 0.108 3.892 18 C -0.091 4.091 19 C -0.088 4.088 20 C -0.155 4.155 21 Br 0.095 6.905 22 C -0.087 4.087 23 N 0.545 4.455 24 O -0.378 6.378 25 O -0.352 6.352 26 C -0.114 4.114 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.229 0.771 34 H 0.249 0.751 35 H 0.184 0.816 36 H 0.175 0.825 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -20.366 4.535 -9.741 23.027 hybrid contribution 0.735 -0.248 -0.115 0.784 sum -19.631 4.287 -9.857 22.381 Atomic orbital electron populations 1.21873 0.96995 0.99162 1.02023 1.22324 0.94373 0.99893 1.01397 1.19153 0.95729 0.88248 0.81326 0.93002 1.20993 0.88344 1.40496 1.08014 0.90108 1.24821 0.94894 0.95030 0.97641 1.69856 1.08707 1.44048 1.29840 0.86907 0.80922 0.79959 0.80995 1.20132 1.22003 1.18429 1.45512 1.13290 1.57362 1.19128 1.16042 0.83950 0.78769 0.81729 1.90928 1.52091 1.64320 1.37801 1.42915 1.10870 1.61539 1.18485 1.17257 0.85247 0.91080 0.95660 1.21805 0.89982 1.00244 0.97069 1.21112 0.98345 0.93236 0.96107 1.21674 0.92692 0.98912 1.02244 1.96880 1.10544 1.86751 1.96364 1.20351 0.94914 0.90875 1.02592 1.43467 1.00804 1.01502 0.99697 1.94548 1.36364 1.58542 1.48384 1.94682 1.07641 1.68252 1.64610 1.20612 0.95470 0.94492 1.00863 0.94810 0.92713 0.93274 0.92159 0.92480 0.92086 0.77084 0.75129 0.81592 0.82450 0.81985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.51 37.16 0.32 -2.18 16 2 C -0.14 -2.80 5.11 -26.73 -0.14 -2.93 16 3 C 0.26 5.47 1.83 -69.08 -0.13 5.35 16 4 H 0.05 1.23 6.63 -51.93 -0.34 0.89 16 5 C -0.54 -13.49 9.31 -34.44 -0.32 -13.81 16 6 H 0.08 2.13 7.98 -52.49 -0.42 1.71 16 7 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 8 N -0.89 -25.11 13.96 55.43 0.77 -24.33 16 9 Si 0.88 20.41 24.41 -169.99 -4.15 16.26 16 10 H -0.27 -6.14 6.83 56.52 0.39 -5.76 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.26 -5.89 6.53 56.52 0.37 -5.53 16 13 N -0.70 -11.70 5.03 -59.82 -0.30 -12.00 16 14 C 0.69 10.66 6.87 -86.92 -0.60 10.07 16 15 O -0.57 -10.40 11.17 5.29 0.06 -10.35 16 16 N -0.69 -7.58 5.35 -14.22 -0.08 -7.65 16 17 C 0.21 2.24 6.28 -83.68 -0.53 1.71 16 18 C -0.07 -0.74 8.65 -39.40 -0.34 -1.08 16 19 C -0.07 -0.62 9.78 -39.58 -0.39 -1.01 16 20 C -0.07 -0.77 6.22 -39.49 -0.25 -1.01 16 21 Br 0.01 0.09 30.30 -68.01 -2.06 -1.98 16 22 C 0.00 -0.02 6.85 -79.95 -0.55 -0.57 16 23 N 0.03 0.34 4.45 33.96 0.15 0.49 16 24 O -0.17 -2.25 18.45 -29.46 -0.54 -2.80 16 25 O -0.13 -1.75 15.50 -29.46 -0.46 -2.21 16 26 C -0.09 -0.93 9.47 -39.40 -0.37 -1.31 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 29 H 0.05 0.80 5.64 -51.93 -0.29 0.51 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.22 3.22 -51.93 -0.17 1.05 16 32 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.40 5.64 8.56 -40.82 -0.35 5.29 16 34 H 0.41 3.21 8.83 -40.82 -0.36 2.85 16 35 H 0.17 1.94 6.42 -52.49 -0.34 1.60 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.16 1.40 7.61 -52.48 -0.40 1.00 16 LS Contribution 328.80 15.07 4.96 4.96 Total: -1.00 -29.71 328.80 -8.56 -38.27 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -3.53 Total: 6.08 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -3.38 Total: -4.74 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.55 Total: -43.50 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.94 Total: -15.35 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.15 Total: 16.26 kcal Atomic # 35 Polarization: 0.09 SS G_CDS: -2.06 Total: -1.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.71 -8.56 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.012 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds