Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 H 1.08999 * 109.47082 * 303.75029 * 3 2 1 5 5 C 1.50699 * 109.47284 * 183.74618 * 3 2 1 6 6 H 1.07990 * 120.00046 * 245.91030 * 5 3 2 7 7 C 1.37880 * 119.99575 * 65.90955 * 5 3 2 8 8 N 1.31518 * 119.99408 * 199.45524 * 7 5 3 9 9 Si 1.86797 * 120.00577 * 19.45593 * 7 5 3 10 10 H 1.48496 * 109.47547 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46832 * 299.99955 * 9 7 5 12 12 H 1.48499 * 109.46950 * 59.99429 * 9 7 5 13 13 N 1.46499 * 109.47042 * 63.74515 * 3 2 1 14 14 C 1.34781 * 120.00340 * 275.00504 * 13 3 2 15 15 O 1.21590 * 119.99649 * 359.97438 * 14 13 3 16 16 N 1.34773 * 119.99876 * 180.02562 * 14 13 3 17 17 C 1.39985 * 119.99532 * 184.74583 * 16 14 13 18 18 C 1.38877 * 120.06087 * 141.94883 * 17 16 14 19 19 C 1.38089 * 119.94364 * 179.97438 * 18 17 16 20 20 C 1.38379 * 120.05622 * 359.97438 * 19 18 17 21 21 Br 1.89106 * 119.94007 * 180.02562 * 20 19 18 22 22 C 1.38339 * 120.12512 * 359.97438 * 20 19 18 23 23 N 1.48013 * 119.97433 * 179.97438 * 22 20 19 24 24 O 1.21806 * 119.99905 * 180.02562 * 23 22 20 25 25 O 1.21798 * 120.00083 * 0.02562 * 23 22 20 26 26 C 1.38135 * 120.05467 * 359.72956 * 22 20 19 27 27 H 1.09004 * 109.46763 * 299.99784 * 1 2 3 28 28 H 1.08995 * 109.47242 * 59.99738 * 1 2 3 29 29 H 1.09001 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46763 * 240.00216 * 2 1 3 31 31 H 1.09001 * 109.47013 * 120.00671 * 2 1 3 32 32 H 0.96994 * 120.00263 * 354.95149 * 8 7 5 33 33 H 0.97002 * 119.99845 * 95.00065 * 13 3 2 34 34 H 0.96993 * 120.00061 * 4.73598 * 16 14 13 35 35 H 1.08000 * 120.02884 * 0.02562 * 18 17 16 36 36 H 1.07999 * 119.97579 * 180.02562 * 19 18 17 37 37 H 1.07999 * 120.03243 * 180.27788 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6229 1.9753 -0.8545 5 6 3.5442 1.4434 -0.0928 6 1 4.1360 1.8068 0.7342 7 6 4.1647 0.9803 -1.2337 8 7 5.4286 0.6189 -1.1941 9 14 3.2104 0.8662 -2.8354 10 1 4.0982 0.3429 -3.9045 11 1 2.0546 -0.0494 -2.6588 12 1 2.7195 2.2150 -3.2163 13 7 1.6268 2.1065 1.2387 14 6 0.4074 2.6742 1.3247 15 8 -0.3495 2.6355 0.3739 16 7 0.0275 3.2855 2.4641 17 6 -1.2732 3.7876 2.5888 18 6 -1.9448 3.6864 3.8002 19 6 -3.2277 4.1830 3.9206 20 6 -3.8438 4.7816 2.8358 21 35 -5.6005 5.4612 3.0046 22 6 -3.1768 4.8848 1.6282 23 7 -3.8393 5.5252 0.4699 24 8 -3.2526 5.6159 -0.5937 25 8 -4.9711 5.9615 0.5802 26 6 -1.8912 4.3952 1.5040 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.9444 0.7464 -0.3826 33 1 2.2308 2.1376 1.9971 34 1 0.6553 3.3774 3.1977 35 1 -1.4639 3.2204 4.6475 36 1 -3.7503 4.1049 4.8625 37 1 -1.3691 4.4799 0.5624 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096179.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = 14.834125 kcal Electronic energy + Delta-G solvation = -25348.255259 eV Core-core repulsion = 21369.239635 eV Total energy + Delta-G solvation = -3979.015624 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 371.031 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.24714 -40.81577 -39.14608 -36.59452 -36.01937 -34.81668 -32.78629 -32.30377 -32.13030 -31.29668 -29.05986 -27.22228 -26.65522 -23.66995 -22.80735 -22.35883 -21.27287 -19.96215 -19.53659 -18.90941 -18.50399 -17.58451 -17.33957 -16.81921 -16.56357 -16.06776 -15.24344 -15.17615 -14.49640 -14.05021 -13.92936 -13.47378 -12.95375 -12.76892 -12.71896 -12.48240 -12.46016 -12.23910 -11.92358 -11.57890 -11.32795 -11.07646 -11.00370 -10.84206 -10.53771 -10.41839 -10.03631 -9.98092 -9.87318 -9.74335 -9.66308 -9.22535 -8.70867 -8.39488 -8.29514 -6.70301 -4.33725 -0.41892 0.43671 0.92438 1.16183 1.31349 2.54929 2.77196 3.33036 3.38382 3.40785 3.54613 3.92465 4.27368 4.30940 4.33859 4.46362 4.56903 4.93757 5.04771 5.14201 5.31936 5.51438 5.71281 5.95480 5.99000 6.13861 6.23664 6.36255 6.45061 6.65883 6.76114 6.82048 6.93225 7.24170 7.27493 7.55908 7.62608 8.12193 8.31622 8.57422 8.79971 9.35022 10.70885 Molecular weight = 371.03amu Principal moments of inertia in cm(-1) A = 0.021580 B = 0.002485 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.176740 B =11263.283302 C =11929.356659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.264 3.736 4 H 0.044 0.956 5 C -0.624 4.624 6 H 0.062 0.938 7 C 0.043 3.957 8 N -0.892 5.892 9 Si 1.037 2.963 10 H -0.282 1.282 11 H -0.270 1.270 12 H -0.278 1.278 13 N -0.704 5.704 14 C 0.690 3.310 15 O -0.572 6.572 16 N -0.693 5.693 17 C 0.201 3.799 18 C -0.101 4.101 19 C -0.069 4.069 20 C -0.074 4.074 21 Br 0.008 6.992 22 C -0.003 4.003 23 N 0.024 4.976 24 O -0.154 6.154 25 O -0.136 6.136 26 C -0.052 4.052 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.270 0.730 33 H 0.392 0.608 34 H 0.412 0.588 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.384 7.955 15.535 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.161 3.839 4 H 0.062 0.938 5 C -0.661 4.661 6 H 0.080 0.920 7 C -0.165 4.165 8 N -0.524 5.524 9 Si 0.865 3.135 10 H -0.207 1.207 11 H -0.196 1.196 12 H -0.204 1.204 13 N -0.354 5.354 14 C 0.391 3.609 15 O -0.449 6.449 16 N -0.342 5.342 17 C 0.102 3.898 18 C -0.123 4.123 19 C -0.090 4.090 20 C -0.156 4.156 21 Br 0.094 6.906 22 C -0.089 4.089 23 N 0.544 4.456 24 O -0.368 6.368 25 O -0.355 6.355 26 C -0.074 4.074 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.225 0.775 34 H 0.248 0.752 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -19.113 7.264 13.606 24.560 hybrid contribution 0.855 0.500 2.122 2.342 sum -18.258 7.764 15.728 25.318 Atomic orbital electron populations 1.21866 0.97357 0.98908 1.01816 1.22333 0.93743 0.99680 1.01878 1.19052 0.95393 0.88142 0.81340 0.93784 1.22017 0.89315 1.50145 1.04659 0.92007 1.25672 0.97058 0.91878 1.01842 1.70893 1.09690 1.39216 1.32603 0.84118 0.75687 0.77875 0.75858 1.20749 1.19618 1.20406 1.45607 1.13160 1.57463 1.19167 1.16162 0.83805 0.78817 0.82143 1.90952 1.53120 1.64715 1.36142 1.42895 1.11298 1.60728 1.19276 1.17268 0.85878 0.93481 0.93167 1.21386 0.93857 0.99161 0.97896 1.20926 0.94347 0.96227 0.97506 1.21658 0.95510 1.04206 0.94239 1.96876 1.11545 1.84514 1.97657 1.20576 0.95229 1.06359 0.86744 1.43463 1.00931 0.99261 1.01968 1.94609 1.66389 1.61362 1.14486 1.94654 1.02726 1.48316 1.89781 1.21238 0.91960 0.91983 1.02219 0.93764 0.92764 0.95050 0.91251 0.93042 0.92000 0.77461 0.75158 0.82929 0.82498 0.80476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.49 37.16 0.32 -2.42 16 2 C -0.14 -2.89 5.32 -26.73 -0.14 -3.03 16 3 C 0.26 5.83 1.84 -69.08 -0.13 5.70 16 4 H 0.04 1.07 6.18 -51.93 -0.32 0.75 16 5 C -0.62 -15.82 8.98 -34.44 -0.31 -16.13 16 6 H 0.06 1.63 7.96 -52.49 -0.42 1.21 16 7 C 0.04 1.16 5.28 -17.82 -0.09 1.07 16 8 N -0.89 -25.55 13.70 55.43 0.76 -24.79 16 9 Si 1.04 24.23 26.37 -169.99 -4.48 19.75 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -5.92 5.84 56.52 0.33 -5.59 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.70 -12.39 5.01 -59.81 -0.30 -12.69 16 14 C 0.69 11.34 6.90 -86.92 -0.60 10.74 16 15 O -0.57 -11.36 11.12 5.29 0.06 -11.30 16 16 N -0.69 -7.84 5.34 -14.22 -0.08 -7.92 16 17 C 0.20 2.22 6.24 -83.67 -0.52 1.70 16 18 C -0.10 -0.75 9.97 -39.40 -0.39 -1.15 16 19 C -0.07 -0.52 9.78 -39.58 -0.39 -0.91 16 20 C -0.07 -0.79 6.23 -39.49 -0.25 -1.03 16 21 Br 0.01 0.08 30.30 -68.01 -2.06 -1.98 16 22 C 0.00 -0.05 6.85 -79.95 -0.55 -0.59 16 23 N 0.02 0.36 4.45 33.96 0.15 0.51 16 24 O -0.15 -2.64 18.45 -29.46 -0.54 -3.18 16 25 O -0.14 -2.04 15.50 -29.46 -0.46 -2.49 16 26 C -0.05 -0.71 8.19 -39.39 -0.32 -1.03 16 27 H 0.04 0.83 5.68 -51.93 -0.29 0.53 16 28 H 0.05 1.11 7.77 -51.93 -0.40 0.70 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.54 5.08 -51.93 -0.26 1.28 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.27 7.62 8.73 -40.82 -0.36 7.26 16 33 H 0.39 5.91 8.54 -40.82 -0.35 5.56 16 34 H 0.41 3.13 8.84 -40.82 -0.36 2.77 16 35 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.18 2.89 6.02 -52.49 -0.32 2.58 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -31.11 331.56 -8.97 -40.08 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -3.64 Total: 6.09 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.38 Total: -7.08 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.53 Total: -44.88 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.94 Total: -16.98 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -4.48 Total: 19.75 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -2.06 Total: -1.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.11 -8.97 -40.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096179.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.915 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds