Wall clock time and date at job start Tue Mar 31 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35959 * 116.99514 * 2 1 4 4 C 1.38657 * 120.06336 * 0.02562 * 3 2 1 5 5 C 1.38184 * 119.96694 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.09657 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.93948 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47115 * 339.99363 * 7 6 5 9 9 C 1.52999 * 109.47360 * 99.99603 * 7 6 5 10 10 N 1.46498 * 109.47263 * 219.99874 * 7 6 5 11 11 C 1.38104 * 120.00469 * 154.99859 * 10 7 6 12 12 N 1.32859 * 120.81016 * 359.97424 * 11 10 7 13 13 C 1.32126 * 121.19379 * 180.02562 * 12 11 10 14 14 N 1.31503 * 122.64839 * 0.02562 * 13 12 11 15 15 C 1.33201 * 120.67819 * 0.02562 * 14 13 12 16 16 C 1.40810 * 120.81560 * 179.97438 * 11 10 7 17 17 C 1.41167 * 134.70125 * 0.02562 * 16 11 10 18 18 N 1.30250 * 108.47105 * 179.97438 * 17 16 11 19 19 N 1.36317 * 134.61338 * 179.68308 * 15 14 13 20 20 C 1.46507 * 125.87373 * 0.29039 * 19 15 14 21 21 C 1.50698 * 109.47202 * 89.99755 * 20 19 15 22 22 H 1.07993 * 119.99950 * 0.02562 * 21 20 19 23 23 C 1.37877 * 119.99787 * 180.02562 * 21 20 19 24 24 N 1.31520 * 120.00118 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00240 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46954 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47442 * 119.99631 * 25 23 21 28 28 H 1.48506 * 109.46970 * 240.00246 * 25 23 21 29 29 C 1.38261 * 120.12846 * 0.28866 * 6 5 4 30 30 C 1.38340 * 120.02348 * 359.45744 * 29 6 5 31 31 F 1.35096 * 120.04593 * 180.29374 * 30 29 6 32 32 H 1.09000 * 109.46742 * 299.99026 * 1 2 3 33 33 H 1.08991 * 109.47743 * 59.99315 * 1 2 3 34 34 H 1.09001 * 109.46726 * 179.97438 * 1 2 3 35 35 H 1.07997 * 120.02000 * 0.03772 * 4 3 2 36 36 H 1.07997 * 119.95058 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47202 * 59.99814 * 9 7 6 38 38 H 1.09008 * 109.47191 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.46758 * 300.00088 * 9 7 6 40 40 H 0.97009 * 119.99769 * 334.99499 * 10 7 6 41 41 H 1.08003 * 118.67783 * 179.97438 * 13 12 11 42 42 H 1.08002 * 125.76334 * 359.97438 * 17 16 11 43 43 H 1.09003 * 109.46941 * 210.00442 * 20 19 15 44 44 H 1.08998 * 109.46713 * 329.99593 * 20 19 15 45 45 H 0.97000 * 120.00129 * 180.02562 * 24 23 21 46 46 H 1.07994 * 119.98984 * 179.73173 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9215 3.6053 0.0000 6 6 3.3022 3.6778 -0.0005 7 6 3.9848 5.0213 -0.0005 8 1 3.2884 5.7827 -0.3517 9 6 4.4396 5.3623 1.4199 10 7 5.1489 4.9776 -0.8888 11 6 5.6242 6.1406 -1.4622 12 7 5.0376 7.3078 -1.2199 13 6 5.4856 8.4250 -1.7648 14 7 6.5245 8.4545 -2.5704 15 6 7.1798 7.3357 -2.8757 16 6 6.7421 6.1184 -2.3181 17 6 7.6033 5.1094 -2.8006 18 7 8.4888 5.6608 -3.5806 19 7 8.2557 7.0396 -3.6586 20 6 9.0411 8.0004 -4.4374 21 6 10.1732 8.5257 -3.5928 22 1 10.2957 8.1784 -2.5776 23 6 11.0525 9.4498 -4.1162 24 7 10.9035 9.8724 -5.3527 25 14 12.4562 10.1005 -3.0696 26 1 12.4042 9.4715 -1.7253 27 1 13.7509 9.7742 -3.7195 28 1 12.3290 11.5737 -2.9314 29 6 4.0579 2.5200 -0.0066 30 6 3.4333 1.2857 -0.0007 31 9 4.1713 0.1541 -0.0006 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 -0.3633 -1.0277 -0.0005 35 1 0.2136 2.3201 0.0016 36 1 1.3339 4.5115 0.0000 37 1 5.1361 4.6010 1.7711 38 1 4.9330 6.3344 1.4200 39 1 3.5734 5.3949 2.0808 40 1 5.5861 4.1317 -1.0742 41 1 4.9776 9.3513 -1.5402 42 1 7.5389 4.0577 -2.5631 43 1 9.4456 7.5072 -5.3213 44 1 8.4019 8.8283 -4.7440 45 1 11.5224 10.5222 -5.7211 46 1 5.1362 2.5793 -0.0113 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:26 Heat of formation + Delta-G solvation = 64.240764 kcal Electronic energy + Delta-G solvation = -32218.494087 eV Core-core repulsion = 27638.980066 eV Total energy + Delta-G solvation = -4579.514021 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.150 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.11683 -41.41116 -40.59792 -38.99022 -38.19178 -36.34339 -33.87151 -32.98851 -31.41950 -31.32409 -31.12082 -29.63838 -28.79862 -27.71203 -27.17978 -24.27549 -23.97020 -23.46754 -23.04326 -22.37393 -21.07024 -20.08962 -18.89402 -18.08178 -17.69706 -17.12858 -16.91386 -16.65381 -16.59115 -16.28017 -15.69175 -15.45419 -15.21136 -15.08883 -14.71746 -14.61673 -14.32524 -14.12902 -14.01134 -13.73887 -13.45761 -13.33056 -13.05958 -12.86390 -12.65667 -12.48937 -12.17102 -12.04601 -11.66806 -11.65812 -11.57236 -11.31632 -11.16998 -11.00551 -10.92378 -10.76108 -10.28351 -10.08533 -9.81991 -9.41584 -9.28037 -8.69279 -8.59807 -8.57829 -8.23171 -7.65045 -6.21397 -4.27723 0.65126 0.71638 1.30791 1.93505 2.63609 2.86882 3.00943 3.06963 3.17810 3.23891 3.30922 3.37634 3.75848 4.12881 4.19380 4.31648 4.39901 4.43629 4.58254 4.62910 4.67779 4.72460 4.74644 4.90606 4.95866 5.00441 5.07648 5.13249 5.14794 5.17176 5.34282 5.48374 5.52025 5.59765 5.61440 5.69822 5.75227 5.96531 6.06487 6.14300 6.34236 6.68291 6.76957 6.89286 7.03989 7.11035 7.22842 7.49343 7.72377 7.90360 7.92287 8.23221 8.72549 8.82568 9.37332 10.86852 Molecular weight = 371.15amu Principal moments of inertia in cm(-1) A = 0.019015 B = 0.001848 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.137920 B =15147.759174 C =15700.721021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.094 3.906 4 C -0.178 4.178 5 C -0.075 4.075 6 C -0.097 4.097 7 C 0.199 3.801 8 H 0.106 0.894 9 C -0.158 4.158 10 N -0.704 5.704 11 C 0.512 3.488 12 N -0.617 5.617 13 C 0.366 3.634 14 N -0.554 5.554 15 C 0.364 3.636 16 C -0.337 4.337 17 C 0.068 3.932 18 N -0.242 5.242 19 N -0.332 5.332 20 C 0.263 3.737 21 C -0.532 4.532 22 H 0.062 0.938 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.907 3.093 26 H -0.273 1.273 27 H -0.281 1.281 28 H -0.280 1.280 29 C -0.111 4.111 30 C 0.075 3.925 31 F -0.131 7.131 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.407 0.593 41 H 0.195 0.805 42 H 0.182 0.818 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.267 0.733 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.775 -16.109 13.302 31.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.047 3.953 4 C -0.197 4.197 5 C -0.093 4.093 6 C -0.098 4.098 7 C 0.094 3.906 8 H 0.124 0.876 9 C -0.217 4.217 10 N -0.338 5.338 11 C 0.260 3.740 12 N -0.348 5.348 13 C 0.072 3.928 14 N -0.278 5.278 15 C 0.116 3.884 16 C -0.355 4.355 17 C -0.127 4.127 18 N -0.058 5.058 19 N -0.118 5.118 20 C 0.146 3.854 21 C -0.571 4.571 22 H 0.080 0.920 23 C -0.137 4.137 24 N -0.529 5.529 25 Si 0.734 3.266 26 H -0.197 1.197 27 H -0.207 1.207 28 H -0.206 1.206 29 C -0.130 4.130 30 C 0.055 3.945 31 F -0.109 7.109 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.245 0.755 41 H 0.211 0.789 42 H 0.198 0.802 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.908 -15.424 12.476 30.304 hybrid contribution 0.645 -0.622 0.724 1.152 sum -22.262 -16.046 13.200 30.452 Atomic orbital electron populations 1.23139 0.77753 1.04421 1.01598 1.86150 1.21860 1.25747 1.88616 1.19040 0.90840 0.85748 0.99642 1.21139 1.00413 0.91288 1.06817 1.20878 0.93490 0.97617 0.97332 1.19785 0.93670 0.94403 1.01956 1.19714 0.87186 0.93079 0.90650 0.87619 1.22197 1.01799 1.02802 0.94887 1.44496 1.32645 1.06554 1.50078 1.17852 0.85149 0.86859 0.84157 1.67925 1.35750 0.97754 1.33380 1.24407 0.87480 0.94906 0.85986 1.67515 1.11047 1.28563 1.20700 1.18937 0.89447 0.89167 0.90882 1.19607 1.05539 0.96960 1.13373 1.23369 0.93032 0.99060 0.97265 1.76947 1.20565 0.89285 1.18994 1.49472 1.21521 1.04608 1.36203 1.19805 0.90356 0.84667 0.90558 1.21286 1.11253 1.24964 0.99600 0.91996 1.24902 0.97885 0.95703 0.95236 1.69930 1.37692 1.31327 1.13952 0.86288 0.81315 0.78704 0.80261 1.19708 1.20656 1.20589 1.20789 1.01048 0.89812 1.01342 1.16894 0.85951 0.82953 1.08725 1.91520 1.76332 1.48881 1.94193 0.92326 0.92294 0.87873 0.84237 0.84465 0.92535 0.90982 0.91587 0.75531 0.78866 0.80152 0.92804 0.92215 0.92326 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.68 10.36 -19.61 -0.20 -2.88 16 3 C 0.09 0.81 6.69 -39.18 -0.26 0.55 16 4 C -0.18 -1.15 9.04 -39.45 -0.36 -1.51 16 5 C -0.07 -0.48 9.66 -39.59 -0.38 -0.87 16 6 C -0.10 -0.74 4.96 -104.61 -0.52 -1.26 16 7 C 0.20 1.71 2.81 -69.08 -0.19 1.51 16 8 H 0.11 0.97 7.43 -51.93 -0.39 0.58 16 9 C -0.16 -1.31 9.47 37.16 0.35 -0.95 16 10 N -0.70 -7.45 5.15 -54.73 -0.28 -7.73 16 11 C 0.51 7.55 7.53 -154.86 -1.17 6.39 16 12 N -0.62 -9.20 9.34 -13.62 -0.13 -9.33 16 13 C 0.37 5.91 12.24 -92.12 -1.13 4.78 16 14 N -0.55 -11.46 10.47 -13.97 -0.15 -11.61 16 15 C 0.36 7.94 8.04 -156.23 -1.26 6.69 16 16 C -0.34 -6.02 6.14 -106.82 -0.66 -6.68 16 17 C 0.07 1.15 11.87 -17.11 -0.20 0.95 16 18 N -0.24 -5.19 12.45 30.80 0.38 -4.81 16 19 N -0.33 -7.93 3.63 -61.64 -0.22 -8.15 16 20 C 0.26 7.03 6.19 -5.19 -0.03 7.00 16 21 C -0.53 -15.23 9.39 -34.44 -0.32 -15.55 16 22 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 23 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 24 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 25 Si 0.91 21.76 29.54 -169.99 -5.02 16.74 16 26 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 C -0.11 -0.90 9.03 -39.54 -0.36 -1.26 16 30 C 0.07 0.72 7.31 -39.30 -0.29 0.43 16 31 F -0.13 -1.46 17.11 2.25 0.04 -1.43 16 32 H 0.06 0.16 7.66 -51.93 -0.40 -0.23 16 33 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 34 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.14 0.55 6.30 -52.49 -0.33 0.22 16 36 H 0.14 0.62 8.03 -52.49 -0.42 0.20 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.41 3.65 6.72 -40.82 -0.27 3.38 16 41 H 0.19 2.33 8.06 -52.48 -0.42 1.90 16 42 H 0.18 2.11 8.06 -52.49 -0.42 1.68 16 43 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 44 H 0.06 1.67 8.14 -51.93 -0.42 1.24 16 45 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.14 0.98 6.89 -52.49 -0.36 0.62 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -34.55 400.09 -10.19 -44.74 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.50 Total: 0.43 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -5.88 Total: 3.07 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: 0.34 Total: -66.70 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: -0.20 Total: -2.88 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.55 -10.19 -44.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.980 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds