Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99855 * 2 1 4 4 H 1.48500 * 109.46927 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47421 * 300.00028 * 3 2 1 6 6 H 1.48500 * 109.46798 * 60.00522 * 3 2 1 7 7 C 1.37874 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00170 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46889 * 180.02562 * 9 7 2 11 11 N 1.40059 * 125.87445 * 269.99738 * 10 9 7 12 12 C 1.30246 * 109.69480 * 179.97438 * 11 10 9 13 13 C 1.41178 * 108.47244 * 359.77190 * 12 11 10 14 14 C 1.36317 * 125.86997 * 89.99902 * 10 9 7 15 15 N 1.33195 * 134.62117 * 0.02562 * 14 10 9 16 16 C 1.31496 * 120.68787 * 179.97438 * 15 14 10 17 17 N 1.32127 * 122.64875 * 359.97438 * 16 15 14 18 18 C 1.32863 * 121.18582 * 0.02562 * 17 16 15 19 19 N 1.38117 * 120.80917 * 179.97438 * 18 17 16 20 20 C 1.46929 * 110.98608 * 124.22735 * 19 18 17 21 21 C 1.53037 * 109.47910 * 174.18076 * 20 19 18 22 22 C 1.53114 * 109.31211 * 59.15772 * 21 20 19 23 23 C 1.53126 * 109.16239 * 302.32855 * 22 21 20 24 24 H 1.08997 * 109.49757 * 297.67568 * 23 22 21 25 25 N 1.46497 * 109.50438 * 177.59634 * 23 22 21 26 26 C 1.47056 * 125.41156 * 119.71905 * 25 23 22 27 27 C 1.54101 * 103.86154 * 179.86657 * 26 25 23 28 28 N 1.47050 * 103.86431 * 0.37690 * 27 26 25 29 29 C 1.33944 * 109.17696 * 359.74969 * 28 27 26 30 30 O 1.21599 * 123.04140 * 180.02562 * 29 28 27 31 31 C 1.46850 * 110.99784 * 359.97438 * 19 18 17 32 32 H 0.96997 * 119.99908 * 359.97438 * 1 2 3 33 33 H 1.08994 * 109.47149 * 60.00333 * 9 7 2 34 34 H 1.08993 * 109.47261 * 299.99883 * 9 7 2 35 35 H 1.08002 * 125.76650 * 180.02562 * 12 11 10 36 36 H 1.07999 * 118.68182 * 180.02562 * 16 15 14 37 37 H 1.08994 * 109.51866 * 54.15311 * 20 19 18 38 38 H 1.09007 * 109.45009 * 294.15993 * 20 19 18 39 39 H 1.09002 * 109.50283 * 299.19589 * 21 20 19 40 40 H 1.09003 * 109.50113 * 179.11776 * 21 20 19 41 41 H 1.09006 * 109.52545 * 62.23190 * 22 21 20 42 42 H 1.08997 * 109.52864 * 182.35913 * 22 21 20 43 43 H 1.09000 * 110.54506 * 298.59666 * 26 25 23 44 44 H 1.09005 * 110.54526 * 61.40168 * 26 25 23 45 45 H 1.08996 * 110.75761 * 241.67344 * 27 26 25 46 46 H 1.09003 * 110.45817 * 118.92755 * 27 26 25 47 47 H 0.96997 * 125.41103 * 179.75582 * 28 27 26 48 48 H 1.08997 * 109.46198 * 65.82252 * 31 19 18 49 49 H 1.08999 * 109.45191 * 305.84968 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 7 2.7364 -4.2366 -1.1354 12 6 3.5497 -5.1870 -0.7725 13 6 3.5908 -5.2261 0.6381 14 6 2.7221 -4.2198 1.1041 15 7 2.5788 -4.0528 2.4178 16 6 3.2313 -4.8165 3.2665 17 7 4.0513 -5.7763 2.8767 18 6 4.2610 -6.0210 1.5878 19 7 5.1203 -7.0260 1.1891 20 6 4.4410 -7.9765 0.2981 21 6 5.4560 -8.9892 -0.2371 22 6 6.0986 -9.7313 0.9380 23 6 6.7568 -8.7147 1.8750 24 1 7.5490 -8.1886 1.3423 25 7 7.3245 -9.4118 3.0317 26 6 8.7445 -9.4115 3.4141 27 6 8.7847 -10.2823 4.6849 28 7 7.3847 -10.6883 4.8783 29 6 6.6336 -10.1553 3.9058 30 8 5.4330 -10.3301 3.8240 31 6 5.7051 -7.7096 2.3498 32 1 -0.4850 0.8400 0.0004 33 1 0.6241 -2.5567 -0.8903 34 1 0.6247 -2.5571 0.8896 35 1 4.1027 -5.8330 -1.4382 36 1 3.0906 -4.6531 4.3247 37 1 3.9921 -7.4370 -0.5358 38 1 3.6625 -8.5009 0.8524 39 1 6.2273 -8.4669 -0.8032 40 1 4.9496 -9.7039 -0.8858 41 1 5.3331 -10.2852 1.4815 42 1 6.8522 -10.4238 0.5632 43 1 9.3531 -9.8537 2.6254 44 1 9.0808 -8.3987 3.6359 45 1 9.1368 -9.7035 5.5388 46 1 9.4182 -11.1555 4.5286 47 1 7.0571 -11.2525 5.5962 48 1 4.9209 -8.2351 2.8948 49 1 6.1736 -6.9755 3.0053 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200010.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = 123.111786 kcal Electronic energy + Delta-G solvation = -34024.028428 eV Core-core repulsion = 29602.820302 eV Total energy + Delta-G solvation = -4421.208126 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.181 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.72713 -41.34309 -39.40645 -38.05451 -36.55772 -35.30567 -33.77788 -33.34453 -31.88182 -31.38141 -30.36305 -29.55067 -28.74602 -27.23985 -25.31443 -24.35281 -23.39694 -23.31755 -23.18665 -22.17156 -21.15891 -19.99386 -19.63760 -18.07853 -17.58340 -17.40813 -16.79941 -16.69738 -16.57048 -15.80596 -15.40278 -15.09132 -14.92925 -14.83845 -14.55083 -14.43988 -14.28255 -14.12752 -13.94853 -13.63597 -13.57677 -13.27675 -13.00406 -12.84902 -12.75552 -12.51558 -12.17990 -11.88169 -11.70402 -11.30363 -11.17060 -11.07527 -10.94375 -10.93127 -10.80288 -10.71312 -10.29407 -10.18592 -10.15839 -9.76860 -9.59115 -9.24484 -8.90080 -8.77580 -8.60924 -8.31733 -7.85061 -6.22748 -4.29226 1.05904 1.78933 2.17216 2.89332 2.91948 3.00105 3.23233 3.30180 3.33471 3.37089 3.62219 3.96365 4.22947 4.32577 4.37347 4.40310 4.46601 4.58646 4.65743 4.72519 4.79409 4.89954 4.96321 4.97171 5.04064 5.12791 5.14219 5.23798 5.27883 5.32972 5.37801 5.51359 5.57264 5.64585 5.69168 5.74224 5.85060 5.98778 6.11144 6.26048 6.41561 6.52867 6.66322 6.76667 7.01228 7.06376 7.11290 7.22065 7.31969 7.65588 7.81127 7.89693 8.15859 8.34212 8.65584 8.75714 9.35927 10.85560 Molecular weight = 371.18amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.002102 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.371615 B =13316.433723 C =13825.774609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.235 5.235 12 C 0.069 3.931 13 C -0.296 4.296 14 C 0.351 3.649 15 N -0.534 5.534 16 C 0.350 3.650 17 N -0.595 5.595 18 C 0.434 3.566 19 N -0.467 5.467 20 C 0.053 3.947 21 C -0.112 4.112 22 C -0.138 4.138 23 C 0.186 3.814 24 H 0.099 0.901 25 N -0.628 5.628 26 C 0.092 3.908 27 C 0.093 3.907 28 N -0.745 5.745 29 C 0.699 3.301 30 O -0.578 6.578 31 C 0.053 3.947 32 H 0.267 0.733 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.189 0.811 36 H 0.196 0.804 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.428 0.572 48 H 0.074 0.926 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.731 -23.879 5.993 31.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.118 5.118 11 N -0.051 5.051 12 C -0.126 4.126 13 C -0.312 4.312 14 C 0.103 3.897 15 N -0.255 5.255 16 C 0.056 3.944 17 N -0.320 5.320 18 C 0.184 3.816 19 N -0.184 5.184 20 C -0.072 4.072 21 C -0.150 4.150 22 C -0.177 4.177 23 C 0.083 3.917 24 H 0.117 0.883 25 N -0.367 5.367 26 C -0.032 4.032 27 C -0.032 4.032 28 N -0.408 5.408 29 C 0.399 3.601 30 O -0.455 6.455 31 C -0.074 4.074 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.206 0.794 36 H 0.213 0.787 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.270 0.730 48 H 0.092 0.908 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 18.418 -22.550 5.377 29.608 hybrid contribution 0.507 0.076 0.715 0.880 sum 18.925 -22.474 6.091 30.006 Atomic orbital electron populations 1.69930 1.06001 1.27555 1.49384 1.24907 0.94997 0.99402 0.94437 0.86276 0.79943 0.82494 0.77803 1.19684 1.20619 1.20584 1.21279 0.93592 0.89618 1.52668 0.91972 1.19827 0.85669 0.79831 1.00068 1.49503 1.35881 1.27764 0.98682 1.76965 1.11048 1.07669 1.09378 1.23556 0.98816 0.97836 0.92409 1.19654 1.09930 1.06104 0.95526 1.19028 0.91709 0.90446 0.88557 1.67518 1.28392 1.29485 1.00155 1.24509 0.86016 0.84554 0.99314 1.68354 1.23866 1.24116 1.15678 1.19339 0.84683 0.89887 0.87725 1.58525 1.29620 1.12016 1.18273 1.22446 0.95723 0.92759 0.96322 1.21574 0.98724 0.97355 0.97380 1.22057 1.01155 0.98101 0.96360 1.20802 0.95998 0.91585 0.83362 0.88292 1.47197 1.07871 1.52835 1.28787 1.22408 0.83457 1.01110 0.96203 1.22321 0.84291 0.98875 0.97741 1.45135 1.08502 1.56053 1.31086 1.15931 0.85084 0.78942 0.80098 1.90973 1.11864 1.66002 1.76709 1.22357 0.97969 0.96145 0.90966 0.92297 0.92669 0.92252 0.79443 0.78748 0.88772 0.92934 0.90404 0.90103 0.89983 0.91424 0.89970 0.89840 0.89979 0.90128 0.73039 0.90777 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -15.29 9.39 -34.44 -0.32 -15.61 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.26 7.04 6.19 -5.19 -0.03 7.01 16 10 N -0.33 -7.98 3.63 -61.64 -0.22 -8.21 16 11 N -0.23 -5.04 12.45 30.80 0.38 -4.65 16 12 C 0.07 1.19 10.69 -17.11 -0.18 1.01 16 13 C -0.30 -5.55 5.75 -106.82 -0.61 -6.16 16 14 C 0.35 7.87 8.04 -156.23 -1.26 6.62 16 15 N -0.53 -11.50 10.47 -13.97 -0.15 -11.64 16 16 C 0.35 6.17 12.24 -92.12 -1.13 5.04 16 17 N -0.60 -10.19 8.85 -13.62 -0.12 -10.31 16 18 C 0.43 7.22 6.42 -154.84 -0.99 6.22 16 19 N -0.47 -6.07 4.67 -172.77 -0.81 -6.88 16 20 C 0.05 0.58 5.24 -3.79 -0.02 0.56 16 21 C -0.11 -0.88 6.09 -26.65 -0.16 -1.04 16 22 C -0.14 -1.20 5.33 -26.61 -0.14 -1.34 16 23 C 0.19 1.69 2.94 -67.85 -0.20 1.49 16 24 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 25 N -0.63 -5.31 2.85 -171.10 -0.49 -5.80 16 26 C 0.09 0.40 7.65 -3.16 -0.02 0.37 16 27 C 0.09 0.31 8.06 -3.17 -0.03 0.29 16 28 N -0.75 -5.10 6.37 -64.70 -0.41 -5.51 16 29 C 0.70 7.51 8.06 -88.40 -0.71 6.80 16 30 O -0.58 -8.73 14.97 5.28 0.08 -8.65 16 31 C 0.05 0.66 3.98 -3.83 -0.02 0.64 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.06 1.67 8.14 -51.93 -0.42 1.24 16 35 H 0.19 2.33 6.88 -52.49 -0.36 1.97 16 36 H 0.20 2.65 8.06 -52.49 -0.42 2.23 16 37 H 0.09 1.00 4.98 -51.93 -0.26 0.74 16 38 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.94 6.73 -51.93 -0.35 0.59 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 46 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 47 H 0.43 2.33 8.96 -40.82 -0.37 1.96 16 48 H 0.07 1.13 6.73 -51.93 -0.35 0.78 16 49 H 0.09 1.19 7.73 -51.93 -0.40 0.79 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -36.51 395.65 -12.69 -49.20 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.70 Total: 1.17 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: -5.93 Total: 13.66 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.08 Total: -78.14 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.51 -12.69 -49.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200010.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.314 kcal (2) G-P(sol) polarization free energy of solvation -36.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds