Wall clock time and date at job start Tue Mar 31 2020 05:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40056 * 125.87809 * 90.02329 * 10 9 7 12 12 C 1.30250 * 109.69972 * 179.97438 * 11 10 9 13 13 C 1.41166 * 108.46900 * 359.97438 * 12 11 10 14 14 C 1.36323 * 125.87070 * 269.71454 * 10 9 7 15 15 N 1.33189 * 134.62115 * 0.03466 * 14 10 9 16 16 C 1.31498 * 120.69184 * 180.02562 * 15 14 10 17 17 N 1.32138 * 122.64192 * 0.02562 * 16 15 14 18 18 C 1.32863 * 121.18743 * 359.63110 * 17 16 15 19 19 N 1.38105 * 120.80419 * 179.91504 * 18 17 16 20 20 C 1.46957 * 111.00047 * 124.46858 * 19 18 17 21 21 C 1.53055 * 109.36611 * 176.80713 * 20 19 18 22 22 N 1.46956 * 109.36210 * 58.40180 * 21 20 19 23 23 C 1.38610 * 110.99985 * 176.80941 * 22 21 20 24 24 N 1.29691 * 124.94825 * 123.48938 * 23 22 21 25 25 C 1.32118 * 116.86155 * 179.81581 * 24 23 22 26 26 C 1.33326 * 114.58598 * 0.47629 * 25 24 23 27 27 S 1.70965 * 124.95126 * 303.79898 * 23 22 21 28 28 C 1.46957 * 110.88031 * 300.67986 * 22 21 20 29 29 C 1.46952 * 111.00645 * 0.66478 * 19 18 17 30 30 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 33 33 H 1.08007 * 125.76411 * 180.02562 * 12 11 10 34 34 H 1.08000 * 118.68710 * 180.02562 * 16 15 14 35 35 H 1.09004 * 109.49250 * 296.77432 * 20 19 18 36 36 H 1.09003 * 109.49328 * 56.83942 * 20 19 18 37 37 H 1.08993 * 109.49138 * 298.43031 * 21 20 19 38 38 H 1.09003 * 109.50687 * 178.37437 * 21 20 19 39 39 H 1.08003 * 122.70944 * 180.23117 * 25 24 23 40 40 H 1.07997 * 125.95667 * 179.75131 * 26 25 24 41 41 H 1.09003 * 109.48528 * 299.35349 * 28 22 21 42 42 H 1.08999 * 109.48666 * 179.29319 * 28 22 21 43 43 H 1.09001 * 109.49111 * 303.16094 * 29 19 18 44 44 H 1.09006 * 109.48477 * 63.20119 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7358 -4.2419 1.1219 12 6 3.5484 -5.1914 0.7548 13 6 3.5848 -5.2282 -0.6559 14 6 2.7178 -4.2185 -1.1176 15 7 2.5704 -4.0493 -2.4304 16 6 3.2194 -4.8121 -3.2825 17 7 4.0400 -5.7734 -2.8969 18 6 4.2587 -6.0158 -1.6090 19 7 5.1166 -7.0237 -1.2148 20 6 6.1680 -6.5041 -0.3293 21 6 7.0479 -7.6620 0.1478 22 7 7.6324 -8.3416 -1.0168 23 6 8.4935 -9.3532 -0.6211 24 7 8.3905 -10.5969 -0.9740 25 6 9.3039 -11.4282 -0.5049 26 6 10.2141 -10.8622 0.2881 27 16 9.8417 -9.1446 0.4094 28 6 6.5810 -8.8613 -1.9023 29 6 5.7011 -7.7034 -2.3792 30 1 -0.4850 0.8401 -0.0004 31 1 0.6242 -2.5609 0.8844 32 1 0.6244 -2.5529 -0.8956 33 1 4.1003 -5.8413 1.4178 34 1 3.0762 -4.6464 -4.3400 35 1 6.7787 -5.7837 -0.8735 36 1 5.7104 -6.0165 0.5316 37 1 6.4427 -8.3688 0.7154 38 1 7.8460 -7.2755 0.7817 39 1 9.3104 -12.4820 -0.7412 40 1 11.0364 -11.3683 0.7717 41 1 5.9704 -9.5817 -1.3579 42 1 7.0387 -9.3488 -2.7630 43 1 4.9031 -8.0902 -3.0130 44 1 6.3061 -6.9965 -2.9470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:01 Heat of formation + Delta-G solvation = 201.110112 kcal Electronic energy + Delta-G solvation = -30367.645094 eV Core-core repulsion = 26256.739006 eV Total energy + Delta-G solvation = -4110.906088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.122 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76851 -40.66827 -39.37972 -38.27368 -36.20928 -33.84040 -32.57577 -31.90234 -31.17346 -30.59214 -29.48403 -27.47453 -27.22568 -24.71986 -24.58377 -23.41841 -23.38980 -22.45340 -21.04018 -20.30948 -19.76805 -18.83806 -17.64693 -17.62638 -16.77347 -16.70093 -16.25197 -15.78175 -15.47764 -15.35689 -15.09876 -15.04610 -14.74243 -14.44504 -14.25879 -13.94784 -13.83157 -13.50955 -13.40221 -12.99168 -12.60263 -12.22463 -11.95015 -11.81963 -11.70105 -11.63348 -11.48890 -11.26409 -11.08062 -10.97108 -10.83186 -10.43207 -10.34284 -10.25291 -10.01674 -9.84158 -9.64916 -9.37311 -8.87985 -8.65303 -8.55475 -8.42422 -7.94736 -6.27141 -4.33961 0.38981 0.79847 0.95668 1.39431 1.68931 2.43076 2.83819 2.88665 3.12532 3.19931 3.23145 3.27278 3.33079 4.06184 4.14372 4.25697 4.28081 4.43038 4.57838 4.62524 4.71062 4.82795 4.86994 4.88346 5.04257 5.08187 5.08867 5.10763 5.17032 5.26947 5.40187 5.45432 5.48583 5.60848 5.74090 5.79125 5.99631 6.19812 6.31328 6.39693 6.54699 6.95568 6.96258 7.02150 7.22085 7.38896 7.58250 7.74210 7.84500 8.07542 8.56657 8.69802 9.31402 10.81157 Molecular weight = 371.12amu Principal moments of inertia in cm(-1) A = 0.018401 B = 0.001999 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.320842 B =14001.276399 C =14675.381006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.262 3.738 10 N -0.330 5.330 11 N -0.232 5.232 12 C 0.067 3.933 13 C -0.296 4.296 14 C 0.352 3.648 15 N -0.532 5.532 16 C 0.351 3.649 17 N -0.595 5.595 18 C 0.431 3.569 19 N -0.473 5.473 20 C 0.060 3.940 21 C 0.058 3.942 22 N -0.452 5.452 23 C 0.228 3.772 24 N -0.518 5.518 25 C 0.063 3.937 26 C -0.283 4.283 27 S 0.138 5.862 28 C 0.069 3.931 29 C 0.066 3.934 30 H 0.268 0.732 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.188 0.812 34 H 0.198 0.802 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.175 0.825 40 H 0.177 0.823 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.793 -21.393 -0.793 28.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.117 5.117 11 N -0.048 5.048 12 C -0.128 4.128 13 C -0.313 4.313 14 C 0.103 3.897 15 N -0.253 5.253 16 C 0.057 3.943 17 N -0.320 5.320 18 C 0.182 3.818 19 N -0.190 5.190 20 C -0.066 4.066 21 C -0.070 4.070 22 N -0.173 5.173 23 C -0.142 4.142 24 N -0.239 5.239 25 C -0.089 4.089 26 C -0.424 4.424 27 S 0.389 5.611 28 C -0.060 4.060 29 C -0.061 4.061 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.205 0.795 34 H 0.214 0.786 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.192 0.808 40 H 0.194 0.806 41 H 0.083 0.917 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.737 -19.522 -0.457 26.381 hybrid contribution 0.848 -0.571 -0.183 1.039 sum 18.586 -20.094 -0.640 27.379 Atomic orbital electron populations 1.69927 1.06013 1.27613 1.49199 1.24909 0.95000 0.99418 0.94390 0.86277 0.79903 0.82477 0.77851 1.19696 1.20559 1.20597 1.21260 0.93554 0.89576 1.52897 0.91978 1.19848 0.85662 0.79789 1.00146 1.49530 1.35843 1.27623 0.98660 1.76979 1.10802 1.07530 1.09511 1.23535 0.99196 0.97732 0.92331 1.19666 1.10150 1.05948 0.95520 1.19028 0.91640 0.90458 0.88556 1.67518 1.27726 1.30022 1.00076 1.24533 0.85849 0.84618 0.99341 1.68316 1.24438 1.23584 1.15630 1.19297 0.89701 0.85018 0.87819 1.58803 1.18002 1.23429 1.18809 1.22438 0.90835 0.95720 0.97656 1.22543 0.97947 0.96262 0.90209 1.59281 1.18850 1.22215 1.16917 1.25115 0.99343 0.90981 0.98712 1.66849 1.28332 1.00315 1.28374 1.21550 0.90693 1.00615 0.95993 1.26837 1.08467 0.96162 1.10898 1.83995 1.23193 1.07972 1.45890 1.22299 0.90530 0.96273 0.96914 1.22204 0.97860 0.95307 0.90717 0.92248 0.92636 0.92194 0.79543 0.78572 0.91685 0.87618 0.91362 0.88590 0.80769 0.80607 0.91694 0.88412 0.87925 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.26 6.83 6.19 -5.20 -0.03 6.80 16 10 N -0.33 -7.65 3.63 -61.65 -0.22 -7.87 16 11 N -0.23 -4.79 12.45 30.80 0.38 -4.40 16 12 C 0.07 1.09 10.74 -17.11 -0.18 0.91 16 13 C -0.30 -5.19 5.75 -106.82 -0.61 -5.81 16 14 C 0.35 7.50 8.04 -156.23 -1.26 6.24 16 15 N -0.53 -10.81 10.47 -13.97 -0.15 -10.96 16 16 C 0.35 5.63 12.24 -92.11 -1.13 4.51 16 17 N -0.59 -9.06 8.87 -13.62 -0.12 -9.18 16 18 C 0.43 6.50 6.43 -154.85 -1.00 5.50 16 19 N -0.47 -5.53 4.73 -172.65 -0.82 -6.35 16 20 C 0.06 0.58 5.35 -3.76 -0.02 0.56 16 21 C 0.06 0.46 5.46 -3.77 -0.02 0.44 16 22 N -0.45 -4.18 4.78 -175.22 -0.84 -5.01 16 23 C 0.23 2.13 6.73 -87.68 -0.59 1.54 16 24 N -0.52 -5.18 9.51 -15.21 -0.14 -5.32 16 25 C 0.06 0.48 11.34 -19.14 -0.22 0.27 16 26 C -0.28 -1.83 11.34 29.02 0.33 -1.50 16 27 S 0.14 1.01 22.33 -107.50 -2.40 -1.39 16 28 C 0.07 0.64 4.93 -3.77 -0.02 0.62 16 29 C 0.07 0.68 4.80 -3.77 -0.02 0.67 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.19 2.13 6.85 -52.48 -0.36 1.77 16 34 H 0.20 2.36 8.06 -52.49 -0.42 1.93 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.98 5.08 -51.93 -0.26 0.71 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.61 7.44 -51.93 -0.39 0.23 16 39 H 0.18 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.91 7.98 -51.93 -0.41 0.50 16 43 H 0.10 1.09 7.84 -51.93 -0.41 0.68 16 44 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -32.74 379.36 -13.24 -45.98 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.18 Total: -0.17 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -5.19 Total: 7.25 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -1.17 Total: -73.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.40 Total: -1.39 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.74 -13.24 -45.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.089 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds