Wall clock time and date at job start Tue Mar 31 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 111.00032 * 2 1 4 4 C 1.52999 * 109.47293 * 199.93828 * 3 2 1 5 5 O 1.42900 * 109.46881 * 64.64378 * 4 3 2 6 6 C 1.35954 * 116.99901 * 180.02562 * 5 4 3 7 7 C 1.38667 * 120.06402 * 359.97438 * 6 5 4 8 8 C 1.38182 * 119.97179 * 180.02562 * 7 6 5 9 9 C 1.38261 * 120.09370 * 0.02562 * 8 7 6 10 10 C 1.38255 * 120.12763 * 359.97438 * 9 8 7 11 11 C 1.38329 * 120.02976 * 359.97438 * 10 9 8 12 12 F 1.35101 * 120.04900 * 179.97438 * 11 10 9 13 13 C 1.38104 * 111.00024 * 123.95442 * 2 1 3 14 14 N 1.32867 * 120.80933 * 235.76243 * 13 2 1 15 15 C 1.32135 * 121.18841 * 179.69696 * 14 13 2 16 16 N 1.31510 * 122.64264 * 0.63906 * 15 14 13 17 17 C 1.33195 * 120.68615 * 359.67217 * 16 15 14 18 18 C 1.40813 * 120.81098 * 56.04769 * 13 2 1 19 19 C 1.41166 * 134.70324 * 0.02562 * 18 13 2 20 20 N 1.30253 * 108.46871 * 179.97438 * 19 18 13 21 21 N 1.36316 * 134.61323 * 180.02562 * 17 16 15 22 22 C 1.46496 * 125.87289 * 359.97438 * 21 17 16 23 23 C 1.50703 * 109.46844 * 90.00258 * 22 21 17 24 24 H 1.07993 * 120.00541 * 359.97438 * 23 22 21 25 25 C 1.37881 * 119.99555 * 179.97438 * 23 22 21 26 26 N 1.31515 * 120.00259 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99691 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47260 * 59.99948 * 27 25 23 29 29 H 1.48501 * 109.46953 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47304 * 299.99968 * 27 25 23 31 31 H 1.08997 * 109.47184 * 64.68890 * 1 2 3 32 32 H 1.08994 * 109.47232 * 184.69548 * 1 2 3 33 33 H 1.08999 * 109.46995 * 304.69334 * 1 2 3 34 34 H 1.09000 * 109.47010 * 79.93630 * 3 2 1 35 35 H 1.09004 * 109.46951 * 319.93758 * 3 2 1 36 36 H 1.08996 * 109.46840 * 304.64473 * 4 3 2 37 37 H 1.08999 * 109.47101 * 184.64693 * 4 3 2 38 38 H 1.08003 * 120.01195 * 0.02562 * 7 6 5 39 39 H 1.08003 * 119.95031 * 180.02562 * 8 7 6 40 40 H 1.08000 * 119.93163 * 180.02562 * 9 8 7 41 41 H 1.07999 * 119.98304 * 179.72775 * 10 9 8 42 42 H 1.07994 * 118.67595 * 180.28619 * 15 14 13 43 43 H 1.07996 * 125.76285 * 359.95394 * 19 18 13 44 44 H 1.08994 * 109.46952 * 209.99792 * 22 21 17 45 45 H 1.09000 * 109.47186 * 330.00010 * 22 21 17 46 46 H 0.97000 * 119.99859 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.4442 1.3617 -0.4919 5 8 3.4814 0.9348 -1.8551 6 6 4.7030 0.8696 -2.4483 7 6 5.8414 1.2098 -1.7334 8 6 7.0820 1.1434 -2.3384 9 6 7.1900 0.7386 -3.6560 10 6 6.0576 0.3984 -4.3725 11 6 4.8132 0.4620 -3.7717 12 9 3.7063 0.1302 -4.4716 13 6 1.9639 -0.7201 1.0695 14 7 2.8072 -0.1639 1.9325 15 6 3.2807 -0.8441 2.9616 16 7 2.9631 -2.0999 3.1885 17 6 2.1292 -2.7476 2.3765 18 6 1.5918 -2.0635 1.2685 19 6 0.7530 -2.9728 0.5884 20 7 0.7754 -4.1095 1.2240 21 7 1.6175 -4.0105 2.3389 22 6 1.9001 -5.0802 3.2991 23 6 0.8968 -5.0249 4.4222 24 1 0.1261 -4.2685 4.4212 25 6 0.9629 -5.9403 5.4512 26 7 1.9011 -6.8619 5.4523 27 14 -0.2803 -5.8714 6.8438 28 1 -1.6489 -6.0470 6.2948 29 1 0.0061 -6.9558 7.8171 30 1 -0.1860 -4.5562 7.5270 31 1 -0.3633 0.4393 -0.9290 32 1 -0.3633 -1.0242 0.0841 33 1 -0.3633 0.5849 0.8450 34 1 1.9580 1.7750 1.0119 35 1 1.3914 1.9925 -0.6615 36 1 4.0308 0.6762 0.1197 37 1 3.8611 2.3658 -0.4140 38 1 5.7585 1.5266 -0.7043 39 1 7.9685 1.4081 -1.7812 40 1 8.1610 0.6872 -4.1261 41 1 6.1442 0.0867 -5.4029 42 1 3.9602 -0.3505 3.6406 43 1 0.1878 -2.7614 -0.3072 44 1 1.8316 -6.0457 2.7979 45 1 2.9044 -4.9506 3.7023 46 1 1.9473 -7.5061 6.1760 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:01 Heat of formation + Delta-G solvation = 83.465412 kcal Electronic energy + Delta-G solvation = -32949.207451 eV Core-core repulsion = 28370.527073 eV Total energy + Delta-G solvation = -4578.680378 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.150 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.88917 -41.69533 -40.23393 -39.06450 -37.82089 -37.11090 -33.85714 -32.54420 -31.69804 -31.13733 -30.93867 -29.88546 -29.22857 -27.25996 -26.25394 -24.47111 -23.69664 -23.11859 -22.71651 -22.43445 -21.57035 -19.96395 -18.71227 -17.78886 -17.54211 -17.13259 -16.79949 -16.74131 -16.39911 -16.24427 -15.67245 -15.31370 -15.22731 -14.81971 -14.64125 -14.61778 -14.41908 -14.29964 -13.90293 -13.78930 -13.34171 -13.03326 -13.00687 -12.72548 -12.55978 -12.24230 -12.19655 -12.05798 -11.70654 -11.61363 -11.31266 -11.20310 -11.11735 -11.06897 -10.87108 -10.79074 -10.33696 -10.23697 -9.86942 -9.33923 -9.21897 -8.87965 -8.63866 -8.39840 -8.38212 -7.91365 -6.26053 -4.33147 0.85439 0.98769 1.01423 1.68893 2.86314 2.88160 2.93895 3.22976 3.26414 3.30108 3.30849 3.32410 4.02353 4.15260 4.28476 4.30772 4.41521 4.53374 4.60583 4.64427 4.79162 4.90629 4.94638 4.97530 5.00955 5.08965 5.09489 5.18268 5.22113 5.25785 5.41767 5.47200 5.50615 5.59153 5.69771 5.71420 5.78688 5.90921 6.10269 6.20887 6.29740 6.40329 6.58188 6.97219 6.99197 7.04369 7.13927 7.23695 7.58691 7.75277 7.85588 8.10135 8.56485 8.70028 9.32000 10.82176 Molecular weight = 371.15amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.002156 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.686551 B =12981.871753 C =13299.246049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.468 5.468 3 C 0.065 3.935 4 C 0.065 3.935 5 O -0.296 6.296 6 C 0.106 3.894 7 C -0.185 4.185 8 C -0.089 4.089 9 C -0.136 4.136 10 C -0.118 4.118 11 C 0.065 3.935 12 F -0.132 7.132 13 C 0.430 3.570 14 N -0.604 5.604 15 C 0.349 3.651 16 N -0.533 5.533 17 C 0.352 3.648 18 C -0.296 4.296 19 C 0.071 3.929 20 N -0.235 5.235 21 N -0.331 5.331 22 C 0.263 3.737 23 C -0.536 4.536 24 H 0.061 0.939 25 C 0.067 3.933 26 N -0.890 5.890 27 Si 0.908 3.092 28 H -0.274 1.274 29 H -0.283 1.283 30 H -0.274 1.274 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.196 0.804 43 H 0.190 0.810 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 20.616 -16.065 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.185 5.185 3 C -0.061 4.061 4 C -0.010 4.010 5 O -0.209 6.209 6 C 0.059 3.941 7 C -0.204 4.204 8 C -0.107 4.107 9 C -0.154 4.154 10 C -0.137 4.137 11 C 0.045 3.955 12 F -0.111 7.111 13 C 0.181 3.819 14 N -0.330 5.330 15 C 0.055 3.945 16 N -0.255 5.255 17 C 0.103 3.897 18 C -0.313 4.313 19 C -0.124 4.124 20 N -0.050 5.050 21 N -0.117 5.117 22 C 0.147 3.853 23 C -0.574 4.574 24 H 0.079 0.921 25 C -0.136 4.136 26 N -0.528 5.528 27 Si 0.734 3.266 28 H -0.200 1.200 29 H -0.208 1.208 30 H -0.200 1.200 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.213 0.787 43 H 0.206 0.794 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.681 19.093 -15.711 25.613 hybrid contribution -1.014 0.584 0.959 1.513 sum 5.667 19.677 -14.752 25.237 Atomic orbital electron populations 1.22654 0.82618 1.04376 1.02364 1.58586 1.09692 1.14582 1.35613 1.22173 0.94111 0.87866 1.01999 1.22934 0.98373 0.99804 0.79913 1.86199 1.24901 1.82200 1.27587 1.19072 0.86053 0.97524 0.91421 1.21239 0.91879 1.06213 1.01079 1.21032 0.97050 0.97789 0.94874 1.20907 0.98173 1.01717 0.94625 1.21023 0.90368 1.01224 1.01072 1.17023 0.83705 1.06487 0.88318 1.91507 1.51131 1.90366 1.78102 1.19482 0.88697 0.88520 0.85219 1.68246 1.18843 1.38962 1.06997 1.24484 0.93326 0.85651 0.91039 1.67514 1.16963 1.10128 1.30863 1.19029 0.92077 0.87917 0.90643 1.19655 1.11530 0.96448 1.03647 1.23590 0.99085 0.89738 1.00014 1.76998 1.09496 1.21814 0.96715 1.49541 1.32954 1.08464 1.20738 1.19826 0.98241 0.82846 0.84432 1.21183 1.14257 1.15981 1.05991 0.92113 1.24900 0.96018 0.94647 0.98065 1.69906 1.32601 1.16984 1.33296 0.86395 0.81174 0.77903 0.81081 1.19968 1.20833 1.19983 0.89521 0.89489 0.93797 0.89200 0.89306 0.90246 0.91323 0.84435 0.85136 0.85001 0.84248 0.78709 0.79379 0.92654 0.92254 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.31 60.06 0.56 0.81 16 2 N -0.47 -5.69 4.67 -180.65 -0.84 -6.54 16 3 C 0.07 0.63 5.02 -3.82 -0.02 0.61 16 4 C 0.07 0.66 4.80 37.16 0.18 0.83 16 5 O -0.30 -3.69 9.94 -19.59 -0.19 -3.89 16 6 C 0.11 1.25 6.69 -39.17 -0.26 0.99 16 7 C -0.19 -1.76 9.04 -39.44 -0.36 -2.12 16 8 C -0.09 -0.71 10.04 -39.59 -0.40 -1.11 16 9 C -0.14 -1.04 10.04 -39.57 -0.40 -1.44 16 10 C -0.12 -1.07 10.02 -39.54 -0.40 -1.47 16 11 C 0.06 0.76 7.31 -39.30 -0.29 0.47 16 12 F -0.13 -1.77 17.11 2.25 0.04 -1.73 16 13 C 0.43 6.56 6.04 -154.85 -0.94 5.62 16 14 N -0.60 -8.81 7.36 -13.62 -0.10 -8.91 16 15 C 0.35 5.49 12.24 -92.10 -1.13 4.36 16 16 N -0.53 -10.87 10.47 -13.96 -0.15 -11.01 16 17 C 0.35 7.64 8.04 -156.23 -1.26 6.38 16 18 C -0.30 -5.39 5.72 -106.82 -0.61 -6.00 16 19 C 0.07 1.23 10.66 -17.11 -0.18 1.05 16 20 N -0.23 -5.03 12.45 30.80 0.38 -4.65 16 21 N -0.33 -7.85 3.63 -61.64 -0.22 -8.07 16 22 C 0.26 6.97 6.19 -5.19 -0.03 6.93 16 23 C -0.54 -15.11 9.39 -34.44 -0.32 -15.43 16 24 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 25 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 26 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 27 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 28 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.90 4.96 -51.93 -0.26 0.64 16 33 H 0.04 0.40 8.13 -51.93 -0.42 -0.02 16 34 H 0.09 0.84 7.27 -51.93 -0.38 0.46 16 35 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 36 H 0.08 0.93 6.18 -51.93 -0.32 0.61 16 37 H 0.07 0.52 7.66 -51.93 -0.40 0.12 16 38 H 0.14 1.11 6.30 -52.48 -0.33 0.78 16 39 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.20 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.19 2.43 6.97 -52.49 -0.37 2.07 16 44 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 45 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 46 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -33.74 393.99 -10.77 -44.51 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.39 Total: 0.46 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -5.94 Total: 2.27 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.19 Total: -64.01 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.19 Total: -3.89 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.74 -10.77 -44.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.976 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds