Wall clock time and date at job start Tue Mar 31 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86796 * 119.99987 * 2 1 4 4 H 1.48502 * 109.47153 * 274.99734 * 3 2 1 5 5 H 1.48500 * 109.47206 * 34.99970 * 3 2 1 6 6 H 1.48503 * 109.47040 * 155.00194 * 3 2 1 7 7 C 1.39915 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00237 * 214.53760 * 7 2 1 9 9 C 1.41128 * 120.00083 * 34.54422 * 7 2 1 10 10 C 1.40887 * 120.15991 * 7.10745 * 9 7 2 11 11 C 1.36340 * 119.83502 * 180.25562 * 10 9 7 12 12 C 1.39534 * 120.16100 * 359.50111 * 11 10 9 13 13 N 1.39062 * 119.83915 * 180.25964 * 12 11 10 14 14 C 1.34774 * 120.00078 * 27.64448 * 13 12 11 15 15 O 1.21721 * 120.00236 * 4.41923 * 14 13 12 16 16 C 1.46319 * 120.00147 * 184.41589 * 14 13 12 17 17 C 1.34900 * 120.00211 * 186.16324 * 16 14 13 18 18 C 1.47139 * 119.99843 * 9.85436 * 17 16 14 19 19 C 1.39885 * 120.17768 * 48.26567 * 18 17 16 20 20 C 1.37852 * 119.83164 * 179.71509 * 19 18 17 21 21 C 1.38455 * 120.19878 * 0.56462 * 20 19 18 22 22 C 1.38335 * 120.36236 * 359.71069 * 21 20 19 23 23 C 1.38033 * 120.16407 * 0.02562 * 22 21 20 24 24 Br 1.89099 * 120.10217 * 179.97438 * 23 22 21 25 25 C 1.39530 * 120.32584 * 0.22938 * 12 11 10 26 26 C 1.36347 * 120.16665 * 0.02747 * 25 12 11 27 27 H 0.97002 * 119.99551 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.08702 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.92613 * 179.77641 * 11 10 9 30 30 H 0.97001 * 120.00429 * 207.65568 * 13 12 11 31 31 H 1.08003 * 119.99789 * 6.16739 * 16 14 13 32 32 H 1.07999 * 120.00593 * 189.85252 * 17 16 14 33 33 H 1.08002 * 120.08347 * 0.02562 * 19 18 17 34 34 H 1.07998 * 119.89588 * 180.29857 * 20 19 18 35 35 H 1.07994 * 119.81461 * 179.73773 * 21 20 19 36 36 H 1.08000 * 119.91738 * 180.02562 * 22 21 20 37 37 H 1.08004 * 119.91904 * 180.02562 * 25 12 11 38 38 H 1.07996 * 120.08431 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3846 2.1074 -1.3948 5 1 1.4970 2.6198 0.8030 6 1 3.5891 1.4119 0.5917 7 6 2.0082 -1.2117 -0.0005 8 1 2.9454 -1.2945 0.5297 9 6 1.4892 -2.3259 -0.6941 10 6 0.3483 -2.1840 -1.5085 11 6 -0.1506 -3.2659 -2.1714 12 6 0.4719 -4.5091 -2.0530 13 7 -0.0395 -5.6069 -2.7364 14 6 -0.7220 -5.4278 -3.8846 15 8 -0.8221 -4.3142 -4.3658 16 6 -1.3428 -6.5719 -4.5528 17 6 -1.9184 -6.4156 -5.7628 18 6 -1.7367 -5.1595 -6.5071 19 6 -0.4590 -4.6105 -6.6588 20 6 -0.2962 -3.4364 -7.3626 21 6 -1.3943 -2.7940 -7.9090 22 6 -2.6621 -3.3266 -7.7591 23 6 -2.8417 -4.5043 -7.0619 24 35 -4.5757 -5.2305 -6.8575 25 6 1.6055 -4.6559 -1.2527 26 6 2.1126 -3.5841 -0.5798 27 1 -0.4849 0.8401 0.0004 28 1 -0.1321 -1.2215 -1.6045 29 1 -1.0272 -3.1597 -2.7932 30 1 0.0949 -6.5016 -2.3866 31 1 -1.3401 -7.5417 -4.0773 32 1 -2.5126 -7.2124 -6.1852 33 1 0.3983 -5.1079 -6.2298 34 1 0.6903 -3.0142 -7.4844 35 1 -1.2601 -1.8723 -8.4555 36 1 -3.5136 -2.8197 -8.1886 37 1 2.0824 -5.6211 -1.1661 38 1 2.9903 -3.6992 0.0389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097997458.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:07 Heat of formation + Delta-G solvation = 43.907828 kcal Electronic energy + Delta-G solvation = -23936.420382 eV Core-core repulsion = 20369.514752 eV Total energy + Delta-G solvation = -3566.905631 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 371.026 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.01910 -38.80679 -37.19297 -34.65941 -33.74530 -33.05365 -32.19687 -30.08733 -29.44532 -29.19220 -28.67327 -25.43993 -23.75204 -22.26176 -21.77129 -21.28834 -20.25434 -19.02721 -17.43030 -17.32870 -16.43160 -16.11354 -15.34112 -15.26284 -14.91040 -14.33062 -14.09052 -13.96855 -13.64002 -13.38823 -12.95849 -12.94697 -12.69633 -12.49345 -12.11303 -11.89948 -11.39682 -11.33762 -11.16219 -11.11402 -11.06951 -10.80247 -10.62332 -10.25285 -10.13730 -9.84606 -9.75681 -9.41500 -9.00650 -8.83400 -8.55249 -8.04571 -7.49167 -7.15780 -6.86148 -4.24849 0.74367 1.34443 1.63854 1.85023 2.70055 3.02331 3.06677 3.10910 3.19283 3.77363 3.78949 3.84984 3.87915 4.50188 4.61901 4.87733 5.00258 5.14938 5.28863 5.37019 5.51538 5.72743 5.75296 5.93455 6.05451 6.10133 6.16887 6.31321 6.44070 6.48177 6.59443 6.84784 6.91827 6.94984 7.07738 7.14874 7.32627 7.61026 7.70701 8.01910 8.06428 8.22065 8.36813 8.61282 8.81686 8.85175 9.04020 9.95402 Molecular weight = 371.03amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.002644 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.782966 B =10586.275576 C =11390.118932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.084 3.916 3 Si 0.901 3.099 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.102 3.898 10 C -0.186 4.186 11 C -0.080 4.080 12 C -0.024 4.024 13 N -0.637 5.637 14 C 0.513 3.487 15 O -0.518 6.518 16 C -0.186 4.186 17 C -0.048 4.048 18 C -0.028 4.028 19 C -0.035 4.035 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.106 4.106 23 C -0.076 4.076 24 Br -0.061 7.061 25 C -0.097 4.097 26 C -0.229 4.229 27 H 0.284 0.716 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.393 0.607 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 -10.504 -14.534 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.205 4.205 11 C -0.099 4.099 12 C -0.117 4.117 13 N -0.278 5.278 14 C 0.302 3.698 15 O -0.397 6.397 16 C -0.207 4.207 17 C -0.068 4.068 18 C -0.030 4.030 19 C -0.054 4.054 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.155 4.155 24 Br 0.025 6.975 25 C -0.118 4.118 26 C -0.249 4.249 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.128 0.872 30 H 0.226 0.774 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.443 -9.853 -14.742 19.231 hybrid contribution 0.750 0.401 0.406 0.942 sum -6.694 -9.451 -14.337 18.430 Atomic orbital electron populations 1.69957 1.08233 1.29936 1.29941 1.26043 0.94351 1.01921 0.91524 0.86412 0.81138 0.80483 0.79517 1.19000 1.20194 1.18227 1.19597 1.06347 0.94334 1.27978 0.90050 1.17627 0.90983 0.91332 0.90140 1.21139 1.00124 0.98333 1.00926 1.20581 0.98879 0.91865 0.98605 1.17120 0.99986 0.87886 1.06699 1.42913 1.53182 1.09031 1.22675 1.18348 0.80702 0.89525 0.81191 1.90866 1.59734 1.25239 1.63876 1.23126 1.01938 0.98790 0.96854 1.22273 0.95095 0.95562 0.93861 1.18681 0.92472 0.94941 0.96870 1.21059 0.95473 0.95052 0.93783 1.21090 0.99102 0.95316 0.97498 1.21135 0.92016 0.99554 0.99907 1.20854 0.97966 0.94464 0.99271 1.21775 0.89878 0.98974 1.04857 1.96634 1.18837 1.84726 1.97312 1.19960 0.94714 0.97474 0.99617 1.20349 1.03898 0.93040 1.07596 0.90469 0.85878 0.87225 0.77409 0.85014 0.84500 0.85993 0.85692 0.85637 0.85511 0.89446 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.33 10.99 55.55 0.61 -18.72 16 2 C 0.08 2.09 4.94 -17.33 -0.09 2.00 16 3 Si 0.90 18.29 29.67 -169.99 -5.04 13.25 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.46 -12.00 8.96 -37.86 -0.34 -12.34 16 8 H 0.08 2.06 8.03 -52.49 -0.42 1.64 16 9 C 0.10 2.74 5.70 -106.80 -0.61 2.13 16 10 C -0.19 -5.01 8.86 -39.26 -0.35 -5.35 16 11 C -0.08 -2.00 8.61 -39.78 -0.34 -2.34 16 12 C -0.02 -0.54 6.40 -83.62 -0.54 -1.08 16 13 N -0.64 -11.17 5.32 -11.03 -0.06 -11.23 16 14 C 0.51 8.84 6.76 -13.01 -0.09 8.75 16 15 O -0.52 -10.66 9.53 5.17 0.05 -10.61 16 16 C -0.19 -2.34 9.94 -37.52 -0.37 -2.71 16 17 C -0.05 -0.59 8.73 -37.16 -0.32 -0.91 16 18 C -0.03 -0.39 4.38 -105.03 -0.46 -0.85 16 19 C -0.03 -0.51 6.69 -39.11 -0.26 -0.77 16 20 C -0.11 -1.53 10.03 -39.64 -0.40 -1.93 16 21 C -0.11 -1.36 10.04 -39.47 -0.40 -1.75 16 22 C -0.11 -1.37 9.77 -39.62 -0.39 -1.76 16 23 C -0.08 -1.05 6.26 -39.02 -0.24 -1.29 16 24 Br -0.06 -0.73 32.56 -68.01 -2.21 -2.95 16 25 C -0.10 -2.14 9.88 -39.78 -0.39 -2.54 16 26 C -0.23 -5.57 9.74 -39.26 -0.38 -5.95 16 27 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 28 H 0.12 3.45 5.62 -52.49 -0.30 3.15 16 29 H 0.11 2.81 5.92 -52.49 -0.31 2.50 16 30 H 0.39 5.36 8.76 -40.82 -0.36 5.01 16 31 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.14 1.30 7.93 -52.49 -0.42 0.89 16 33 H 0.12 1.80 7.40 -52.49 -0.39 1.41 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 345.39 15.07 5.20 5.20 Total: -1.00 -29.96 345.39 -11.28 -41.24 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -3.86 Total: 12.51 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -5.97 Total: -28.69 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.55 Total: -29.95 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.05 Total: -10.61 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.04 Total: 13.25 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.21 Total: -2.95 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.96 -11.28 -41.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097997458.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.143 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds