Wall clock time and date at job start Tue Mar 31 2020 06:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37665 * 119.73624 * 2 1 4 4 C 1.39800 * 119.76702 * 180.02562 * 3 2 1 5 5 N 1.35671 * 133.38908 * 179.97438 * 4 3 2 6 6 C 1.31075 * 109.64103 * 180.02562 * 5 4 3 7 7 S 1.76197 * 125.08897 * 179.97438 * 6 5 4 8 8 C 1.76201 * 99.99595 * 359.97438 * 7 6 5 9 9 H 1.07997 * 120.00464 * 0.02562 * 8 7 6 10 10 C 1.38747 * 119.99713 * 179.97438 * 8 7 6 11 11 N 1.31574 * 120.00297 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00026 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46992 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47011 * 119.99843 * 12 10 8 15 15 H 1.48495 * 109.47067 * 240.00070 * 12 10 8 16 16 N 1.36726 * 109.82590 * 359.97438 * 6 5 4 17 17 C 1.46506 * 126.39089 * 180.02562 * 16 6 5 18 18 C 1.50704 * 109.47102 * 83.50042 * 17 16 6 19 19 C 1.38233 * 120.00626 * 270.96721 * 18 17 16 20 20 C 1.38224 * 120.00960 * 179.77118 * 19 18 17 21 21 C 1.38266 * 120.02555 * 0.50406 * 20 19 18 22 22 C 1.38190 * 120.01371 * 359.74406 * 21 20 19 23 23 C 1.38328 * 120.00065 * 91.24180 * 18 17 16 24 24 Cl 1.73601 * 120.01723 * 359.95110 * 23 18 17 25 25 C 1.38380 * 107.22025 * 359.72472 * 16 6 5 26 26 C 1.38648 * 133.89790 * 179.47932 * 25 16 6 27 27 C 1.37985 * 119.85980 * 180.51681 * 26 25 16 28 28 C 1.50702 * 119.77505 * 180.28005 * 27 26 25 29 29 H 1.08997 * 109.47153 * 270.02112 * 1 2 3 30 30 H 1.09003 * 109.47114 * 30.02270 * 1 2 3 31 31 H 1.08998 * 109.46832 * 150.02388 * 1 2 3 32 32 H 1.07992 * 120.12227 * 359.97438 * 3 2 1 33 33 H 0.97002 * 120.00489 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.46990 * 203.50735 * 17 16 6 35 35 H 1.09005 * 109.46675 * 323.50681 * 17 16 6 36 36 H 1.08001 * 119.99532 * 359.97438 * 19 18 17 37 37 H 1.07995 * 119.98876 * 180.27265 * 20 19 18 38 38 H 1.07995 * 119.99283 * 179.77364 * 21 20 19 39 39 H 1.07997 * 120.00679 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.07167 * 0.79338 * 26 25 16 41 41 H 1.09006 * 109.47141 * 89.99787 * 28 27 26 42 42 H 1.08999 * 109.47361 * 210.00023 * 28 27 26 43 43 H 1.09000 * 109.47183 * 329.99750 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1899 1.1954 0.0000 4 6 3.5879 1.1961 -0.0005 5 7 4.5194 2.1826 -0.0011 6 6 5.7194 1.6553 -0.0020 7 16 7.2266 2.5679 -0.0037 8 6 6.5895 4.2107 -0.0044 9 1 5.5223 4.3761 -0.0034 10 6 7.4590 5.2919 -0.0052 11 7 8.7592 5.0906 -0.0059 12 14 6.7836 7.0336 -0.0053 13 1 5.2993 6.9889 -0.0050 14 1 7.2580 7.7485 1.2068 15 1 7.2566 7.7479 -1.2182 16 7 5.6266 0.2912 -0.0015 17 6 6.7443 -0.6560 -0.0017 18 6 7.2321 -0.8576 1.4099 19 6 8.2107 -0.0300 1.9280 20 6 8.6548 -0.2119 3.2242 21 6 8.1281 -1.2281 3.9999 22 6 7.1534 -2.0592 3.4813 23 6 6.7047 -1.8744 2.1854 24 17 5.4799 -2.9178 1.5335 25 6 4.2801 -0.0278 0.0062 26 6 3.5749 -1.2215 0.0011 27 6 2.1952 -1.2044 0.0012 28 6 1.4306 -2.5031 0.0021 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6476 2.1293 -0.0004 33 1 9.3671 5.8465 -0.0069 34 1 6.4119 -1.6100 -0.4111 35 1 7.5553 -0.2608 -0.6134 36 1 8.6259 0.7608 1.3209 37 1 9.4161 0.4377 3.6301 38 1 8.4781 -1.3719 5.0114 39 1 6.7424 -2.8532 4.0871 40 1 4.1044 -2.1629 0.0016 41 1 1.2464 -2.8156 1.0300 42 1 0.4793 -2.3650 -0.5118 43 1 2.0132 -3.2680 -0.5114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107964467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:50 Heat of formation + Delta-G solvation = 78.431213 kcal Electronic energy + Delta-G solvation = -28519.376905 eV Core-core repulsion = 24681.556061 eV Total energy + Delta-G solvation = -3837.820844 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 372.076 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35038 -39.36999 -37.67017 -36.53890 -34.41096 -32.68751 -31.93893 -31.26843 -30.79916 -30.51311 -27.07626 -26.21383 -25.67526 -25.45507 -22.77081 -22.07822 -21.84150 -20.39157 -20.19729 -18.02535 -17.15543 -16.66921 -16.02411 -15.75391 -15.64629 -15.19231 -14.95187 -14.76690 -14.52472 -13.97078 -13.87585 -13.72067 -13.55973 -13.18343 -13.06391 -12.91474 -12.68141 -12.32071 -12.23499 -11.93264 -11.74448 -11.50439 -11.38862 -11.24225 -11.19765 -11.13197 -11.12092 -10.99897 -10.67536 -10.51393 -10.19205 -9.77133 -9.34111 -9.14794 -9.06945 -8.85767 -8.71880 -8.07937 -7.53489 -6.64947 -6.50306 -4.22671 1.04133 1.22954 1.45693 1.96399 2.04018 2.51471 3.14584 3.21877 3.28581 3.33109 3.37276 3.75372 3.98967 4.36394 4.57394 4.63200 4.81012 4.88578 4.94820 5.03900 5.11074 5.13725 5.24428 5.28365 5.33332 5.44608 5.45851 5.55969 5.63222 5.66389 5.81848 5.84434 5.90042 5.92413 5.95118 6.00767 6.14346 6.17831 6.29544 6.34474 6.44020 6.55299 6.78064 6.97068 7.02429 7.13296 7.42199 7.54928 7.59575 8.38803 8.63215 9.03510 10.58233 Molecular weight = 372.08amu Principal moments of inertia in cm(-1) A = 0.007715 B = 0.004387 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3628.311649 B = 6380.865771 C = 9385.641799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C -0.081 4.081 4 C 0.071 3.929 5 N -0.505 5.505 6 C 0.269 3.731 7 S 0.127 5.873 8 C -0.528 4.528 9 H 0.108 0.892 10 C 0.075 3.925 11 N -0.878 5.878 12 Si 0.930 3.070 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.278 1.278 16 N -0.486 5.486 17 C 0.153 3.847 18 C -0.105 4.105 19 C -0.074 4.074 20 C -0.114 4.114 21 C -0.103 4.103 22 C -0.120 4.120 23 C -0.019 4.019 24 Cl -0.066 7.066 25 C 0.044 3.956 26 C -0.101 4.101 27 C -0.099 4.099 28 C -0.105 4.105 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.273 0.727 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 -16.476 4.054 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.100 4.100 3 C -0.103 4.103 4 C -0.051 4.051 5 N -0.230 5.230 6 C -0.099 4.099 7 S 0.364 5.636 8 C -0.676 4.676 9 H 0.126 0.874 10 C -0.133 4.133 11 N -0.514 5.514 12 Si 0.755 3.245 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.204 1.204 16 N -0.180 5.180 17 C 0.031 3.969 18 C -0.107 4.107 19 C -0.093 4.093 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.139 4.139 23 C -0.046 4.046 24 Cl -0.037 7.037 25 C -0.065 4.065 26 C -0.123 4.123 27 C -0.102 4.102 28 C -0.161 4.161 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.277 -15.983 3.955 16.788 hybrid contribution -1.356 0.555 0.082 1.467 sum -4.633 -15.428 4.038 16.607 Atomic orbital electron populations 1.20739 0.91622 1.02217 1.01745 1.19262 0.95300 0.91944 1.03502 1.19955 0.90272 0.97435 1.02608 1.19240 0.93945 0.88893 1.03002 1.71109 0.96477 1.28855 1.26511 1.27040 1.02171 0.82283 0.98444 1.83177 0.93363 1.01382 1.85688 1.23321 0.97842 0.88346 1.58130 0.87419 1.25069 0.94531 1.00214 0.93530 1.69919 1.01718 1.32657 1.47092 0.85907 0.79746 0.80920 0.77901 1.18895 1.20395 1.20381 1.45178 1.03873 1.05409 1.63539 1.20548 0.89051 0.93951 0.93387 1.19944 0.98073 0.95874 0.96834 1.21432 0.94679 0.97041 0.96133 1.21321 1.00168 0.97662 0.94024 1.21159 0.96084 0.94907 0.99950 1.20972 0.98419 1.00980 0.93482 1.20859 0.93978 0.94965 0.94761 1.98342 1.53379 1.66278 1.85723 1.18796 0.83632 0.96551 1.07550 1.19864 0.92822 0.94712 1.04889 1.19187 0.92289 0.94496 1.04187 1.20712 0.99645 0.94131 1.01646 0.91805 0.92017 0.91625 0.86137 0.91715 0.88363 0.87691 0.83558 0.84887 0.85150 0.85110 0.86599 0.91876 0.91427 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.58 36.01 0.35 -0.88 16 2 C -0.10 -1.51 5.87 -104.65 -0.61 -2.12 16 3 C -0.08 -1.51 9.74 -39.21 -0.38 -1.89 16 4 C 0.07 1.54 7.22 -84.69 -0.61 0.93 16 5 N -0.50 -12.49 9.96 -10.86 -0.11 -12.60 16 6 C 0.27 6.23 7.92 -88.34 -0.70 5.53 16 7 S 0.13 3.06 19.56 -107.50 -2.10 0.95 16 8 C -0.53 -14.52 9.35 30.92 0.29 -14.23 16 9 H 0.11 3.10 6.85 -52.49 -0.36 2.74 16 10 C 0.08 2.02 5.49 -17.47 -0.10 1.92 16 11 N -0.88 -23.82 13.22 55.49 0.73 -23.09 16 12 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 13 H -0.26 -6.07 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 16 N -0.49 -9.50 2.82 -115.57 -0.33 -9.83 16 17 C 0.15 2.40 5.62 -5.19 -0.03 2.37 16 18 C -0.11 -1.58 5.47 -104.59 -0.57 -2.15 16 19 C -0.07 -1.10 9.50 -39.59 -0.38 -1.48 16 20 C -0.11 -1.44 10.05 -39.58 -0.40 -1.84 16 21 C -0.10 -1.15 10.05 -39.59 -0.40 -1.55 16 22 C -0.12 -1.43 9.83 -39.55 -0.39 -1.82 16 23 C -0.02 -0.26 6.31 -39.50 -0.25 -0.50 16 24 Cl -0.07 -0.84 23.49 -51.86 -1.22 -2.06 16 25 C 0.04 0.87 6.87 -83.86 -0.58 0.29 16 26 C -0.10 -1.67 8.66 -39.52 -0.34 -2.01 16 27 C -0.10 -1.48 5.88 -104.54 -0.62 -2.09 16 28 C -0.10 -1.16 9.59 36.01 0.35 -0.81 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.06 0.64 5.91 -51.93 -0.31 0.33 16 32 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.10 1.36 6.82 -51.93 -0.35 1.00 16 35 H 0.10 1.55 7.85 -51.93 -0.41 1.14 16 36 H 0.15 2.34 6.48 -52.49 -0.34 2.00 16 37 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.71 5.09 -52.49 -0.27 1.44 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.64 5.91 -51.93 -0.31 0.34 16 43 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -31.15 380.82 -12.53 -43.68 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.85 Total: 3.51 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -5.37 Total: -22.33 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.30 Total: -45.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.10 Total: 0.95 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.22 Total: -2.06 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.15 -12.53 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107964467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.113 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds