Wall clock time and date at job start Tue Mar 31 2020 05:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35205 * 126.12420 * 2 1 4 4 C 1.40512 * 107.91728 * 180.02562 * 3 2 1 5 5 N 1.39855 * 125.90762 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99772 * 0.02562 * 5 4 3 7 7 O 1.21391 * 120.00022 * 359.97438 * 6 5 4 8 8 C 1.49331 * 120.00012 * 180.02562 * 6 5 4 9 9 O 1.21359 * 120.00225 * 5.66103 * 8 6 5 10 10 N 1.34780 * 120.00098 * 185.65757 * 8 6 5 11 11 C 1.46501 * 119.99763 * 356.77799 * 10 8 6 12 12 C 1.46496 * 120.00090 * 176.77188 * 10 8 6 13 13 H 1.09005 * 109.47558 * 0.02562 * 12 10 8 14 14 C 1.53002 * 109.47240 * 120.00249 * 12 10 8 15 15 C 1.50701 * 109.47227 * 240.00299 * 12 10 8 16 16 H 1.07994 * 119.99943 * 0.02562 * 15 12 10 17 17 C 1.37882 * 119.99971 * 180.02562 * 15 12 10 18 18 N 1.31519 * 119.99626 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 120.00000 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47217 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47259 * 299.99953 * 19 17 15 22 22 H 1.48506 * 109.47444 * 60.00298 * 19 17 15 23 23 N 1.31303 * 108.19090 * 0.26703 * 4 3 2 24 24 N 1.35817 * 126.12003 * 180.02562 * 2 1 3 25 25 C 1.40104 * 126.03475 * 0.02562 * 24 2 1 26 26 C 1.38866 * 120.06806 * 222.84465 * 25 24 2 27 27 C 1.38114 * 119.92761 * 179.80821 * 26 25 24 28 28 C 1.38282 * 120.06853 * 0.44554 * 27 26 25 29 29 C 1.50706 * 119.92778 * 179.76288 * 28 27 26 30 30 C 1.38275 * 120.14322 * 359.79025 * 28 27 26 31 31 C 1.38119 * 120.06448 * 359.97438 * 30 28 27 32 32 H 1.08999 * 109.46721 * 85.09489 * 1 2 3 33 33 H 1.08996 * 109.47368 * 205.09562 * 1 2 3 34 34 H 1.09002 * 109.47012 * 325.10018 * 1 2 3 35 35 H 1.07998 * 126.03991 * 0.04033 * 3 2 1 36 36 H 0.97001 * 119.99934 * 180.02562 * 5 4 3 37 37 H 1.08999 * 109.47114 * 275.87653 * 11 10 8 38 38 H 1.08993 * 109.46907 * 35.88020 * 11 10 8 39 39 H 1.09002 * 109.46939 * 155.88212 * 11 10 8 40 40 H 1.09006 * 109.46840 * 300.00251 * 14 12 10 41 41 H 1.08997 * 109.47151 * 59.99983 * 14 12 10 42 42 H 1.08999 * 109.47506 * 180.02562 * 14 12 10 43 43 H 0.97009 * 119.99555 * 179.97438 * 18 17 15 44 44 H 1.07996 * 120.03181 * 0.02562 * 26 25 24 45 45 H 1.08000 * 119.96344 * 180.21136 * 27 26 25 46 46 H 1.08998 * 109.47125 * 270.02615 * 29 28 27 47 47 H 1.09004 * 109.47191 * 30.02529 * 29 28 27 48 48 H 1.09002 * 109.47158 * 150.02069 * 29 28 27 49 49 H 1.07994 * 119.96997 * 179.97438 * 30 28 27 50 50 H 1.08007 * 120.03216 * 179.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3041 1.0921 0.0000 4 6 3.6389 0.6531 -0.0006 5 7 4.7720 1.4729 -0.0003 6 6 4.6337 2.8135 0.0012 7 8 3.5257 3.3094 0.0018 8 6 5.8436 3.6889 0.0009 9 8 6.9482 3.1974 -0.1042 10 7 5.7088 5.0249 0.1175 11 6 4.3731 5.6242 0.1733 12 6 6.8978 5.8776 0.1884 13 1 7.7931 5.2584 0.1317 14 6 6.8871 6.8659 -0.9795 15 6 6.8940 6.6378 1.4897 16 1 6.0868 6.4992 2.1936 17 6 7.9210 7.5102 1.7815 18 7 8.9042 7.6786 0.9244 19 14 7.9166 8.4518 3.3947 20 1 9.1212 9.3173 3.4660 21 1 6.6966 9.2951 3.4724 22 1 7.9281 7.4923 4.5281 23 7 3.6385 -0.6599 -0.0068 24 7 2.3076 -1.0971 -0.0005 25 6 1.8783 -2.4307 -0.0016 26 6 2.5036 -3.3636 0.8152 27 6 2.0754 -4.6767 0.8148 28 6 1.0313 -5.0647 -0.0047 29 6 0.5701 -6.4995 -0.0066 30 6 0.4098 -4.1392 -0.8228 31 6 0.8302 -2.8236 -0.8233 32 1 -0.3633 0.0879 -1.0239 33 1 -0.3634 -0.9306 0.4358 34 1 -0.3633 0.8429 0.5880 35 1 1.9733 2.1202 0.0006 36 1 5.6573 1.0765 -0.0011 37 1 3.9958 5.7658 -0.8394 38 1 3.7015 4.9643 0.7224 39 1 4.4284 6.5885 0.6785 40 1 6.8899 6.3161 -1.9207 41 1 5.9920 7.4852 -0.9232 42 1 7.7720 7.5001 -0.9271 43 1 9.6266 8.2927 1.1296 44 1 3.3214 -3.0619 1.4527 45 1 2.5590 -5.4020 1.4523 46 1 1.1278 -7.0594 -0.7573 47 1 0.7428 -6.9380 0.9763 48 1 -0.4939 -6.5388 -0.2401 49 1 -0.4051 -4.4454 -1.4620 50 1 0.3447 -2.1012 -1.4628 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132068907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:42 Heat of formation + Delta-G solvation = 57.769073 kcal Electronic energy + Delta-G solvation = -32468.293969 eV Core-core repulsion = 28077.385530 eV Total energy + Delta-G solvation = -4390.908438 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.87407 -40.44778 -39.50681 -38.12319 -36.02871 -35.12399 -33.70488 -32.81071 -32.48511 -31.30664 -30.54189 -29.54481 -27.34142 -26.79598 -26.21843 -25.30708 -24.77773 -23.34493 -22.26880 -21.60896 -20.55374 -20.17097 -19.14657 -17.75015 -17.08618 -16.86122 -16.36825 -16.21570 -16.00456 -15.83806 -15.49220 -15.14030 -14.98455 -14.60396 -14.41574 -14.24603 -13.98977 -13.80912 -13.70547 -13.32738 -13.18172 -13.15866 -12.71585 -12.69749 -12.53509 -12.43847 -12.38205 -11.93952 -11.75543 -11.65529 -11.59138 -11.13317 -11.04626 -10.88656 -10.82951 -10.79098 -10.58469 -10.31339 -10.21522 -9.45143 -9.38753 -9.25817 -8.89417 -8.84659 -8.47918 -8.14345 -7.76860 -6.13214 -4.21887 0.53425 0.89364 1.45212 1.83145 1.93696 2.75841 2.79873 3.23197 3.26723 3.31632 3.33925 3.68716 3.92928 4.28323 4.32948 4.36966 4.39312 4.51462 4.65479 4.72987 4.84881 4.88609 5.04722 5.13036 5.16872 5.18463 5.19278 5.27072 5.43384 5.47401 5.55427 5.60028 5.69244 5.81271 5.91406 5.95061 6.10262 6.10775 6.20577 6.34407 6.55178 6.66208 6.71985 6.74347 6.87453 6.96412 7.03007 7.19855 7.35986 7.62928 7.63814 7.82592 7.95162 8.06869 8.31195 8.55121 8.82972 9.44288 10.92168 Molecular weight = 370.18amu Principal moments of inertia in cm(-1) A = 0.022642 B = 0.001650 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.347098 B =16966.828649 C =17217.009926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.092 3.908 3 C -0.254 4.254 4 C 0.313 3.687 5 N -0.614 5.614 6 C 0.520 3.480 7 O -0.492 6.492 8 C 0.498 3.502 9 O -0.533 6.533 10 N -0.548 5.548 11 C 0.068 3.932 12 C 0.255 3.745 13 H 0.067 0.933 14 C -0.146 4.146 15 C -0.530 4.530 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.902 3.098 20 H -0.286 1.286 21 H -0.276 1.276 22 H -0.276 1.276 23 N -0.313 5.313 24 N -0.326 5.326 25 C 0.155 3.845 26 C -0.104 4.104 27 C -0.103 4.103 28 C -0.089 4.089 29 C -0.115 4.115 30 C -0.102 4.102 31 C -0.122 4.122 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.180 0.820 36 H 0.428 0.572 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.013 0.987 41 H 0.033 0.967 42 H 0.097 0.903 43 H 0.265 0.735 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.131 0.869 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.194 -22.965 -3.052 30.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.031 4.031 3 C -0.283 4.283 4 C 0.056 3.944 5 N -0.265 5.265 6 C 0.302 3.698 7 O -0.364 6.364 8 C 0.278 3.722 9 O -0.412 6.412 10 N -0.278 5.278 11 C -0.075 4.075 12 C 0.155 3.845 13 H 0.085 0.915 14 C -0.205 4.205 15 C -0.569 4.569 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.730 3.270 20 H -0.211 1.211 21 H -0.201 1.201 22 H -0.202 1.202 23 N -0.141 5.141 24 N -0.105 5.105 25 C 0.064 3.936 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.090 4.090 29 C -0.172 4.172 30 C -0.121 4.121 31 C -0.142 4.142 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.197 0.803 36 H 0.266 0.734 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.032 0.968 41 H 0.052 0.948 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.149 0.851 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.487 -23.693 -3.132 30.837 hybrid contribution 0.160 1.136 0.825 1.413 sum -19.327 -22.557 -2.307 29.794 Atomic orbital electron populations 1.20561 0.86827 1.04108 1.03664 1.21367 0.94959 0.85872 1.00875 1.21718 0.89572 1.00782 1.16253 1.19168 0.88107 0.89142 0.97957 1.42447 1.08119 1.04976 1.70935 1.20987 0.91022 0.81739 0.76009 1.90574 1.27144 1.73036 1.45651 1.19385 0.87682 0.84011 0.81142 1.90742 1.25930 1.73823 1.50676 1.48268 1.10304 1.04302 1.64959 1.22201 0.83171 1.00533 1.01632 1.19201 0.82202 0.88074 0.94993 0.91495 1.22089 1.03052 0.99998 0.95335 1.21240 1.08549 1.24663 1.02439 0.91972 1.24884 0.95027 0.96503 0.97212 1.69871 1.10732 1.36541 1.35224 0.86495 0.77496 0.79643 0.83415 1.21119 1.20120 1.20181 1.77561 0.95889 1.09285 1.31348 1.45367 1.03143 1.03200 1.58783 1.17358 0.97116 0.80900 0.98229 1.21095 1.00386 0.92816 0.98080 1.20965 0.96675 0.95260 0.99267 1.20029 0.96042 0.96420 0.96494 1.20808 1.01571 0.91941 1.02831 1.20874 1.00281 0.91792 0.99159 1.21077 0.97890 0.96991 0.98258 0.89823 0.90833 0.89152 0.80313 0.73374 0.93322 0.89275 0.90323 0.96765 0.94783 0.88501 0.92479 0.84916 0.85120 0.90911 0.91319 0.91339 0.85065 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 8.90 36.01 0.32 -0.37 16 2 C 0.09 1.10 6.76 -81.91 -0.55 0.54 16 3 C -0.25 -3.61 9.51 -39.80 -0.38 -3.99 16 4 C 0.31 4.89 8.09 -154.58 -1.25 3.64 16 5 N -0.61 -9.80 5.43 -11.58 -0.06 -9.86 16 6 C 0.52 9.16 7.74 -11.64 -0.09 9.07 16 7 O -0.49 -8.52 10.25 5.46 0.06 -8.46 16 8 C 0.50 10.37 7.73 -11.64 -0.09 10.28 16 9 O -0.53 -12.31 15.82 5.49 0.09 -12.22 16 10 N -0.55 -11.88 2.75 -175.82 -0.48 -12.37 16 11 C 0.07 1.24 8.48 59.85 0.51 1.75 16 12 C 0.25 6.40 2.63 -69.08 -0.18 6.22 16 13 H 0.07 1.91 6.90 -51.93 -0.36 1.55 16 14 C -0.15 -3.45 8.97 37.16 0.33 -3.12 16 15 C -0.53 -14.08 7.95 -34.44 -0.27 -14.35 16 16 H 0.06 1.63 7.43 -52.49 -0.39 1.24 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 18 N -0.89 -24.51 11.32 55.43 0.63 -23.89 16 19 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 N -0.31 -4.80 12.45 31.41 0.39 -4.41 16 24 N -0.33 -4.22 3.71 -6.89 -0.03 -4.25 16 25 C 0.16 1.67 6.06 -83.61 -0.51 1.16 16 26 C -0.10 -1.02 9.86 -39.39 -0.39 -1.41 16 27 C -0.10 -0.77 9.69 -39.61 -0.38 -1.15 16 28 C -0.09 -0.58 5.88 -104.59 -0.62 -1.20 16 29 C -0.11 -0.46 10.01 36.01 0.36 -0.10 16 30 C -0.10 -0.67 9.69 -39.61 -0.38 -1.05 16 31 C -0.12 -1.00 8.34 -39.40 -0.33 -1.33 16 32 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.07 0.48 6.96 -51.93 -0.36 0.11 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.18 2.58 5.90 -52.49 -0.31 2.27 16 36 H 0.43 6.44 8.31 -40.82 -0.34 6.10 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.55 5.36 -51.94 -0.28 1.27 16 39 H 0.08 1.48 7.12 -51.93 -0.37 1.11 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.03 0.74 7.67 -51.93 -0.40 0.35 16 42 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 48 H 0.07 0.21 8.08 -51.93 -0.42 -0.21 16 49 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 50 H 0.13 0.91 7.04 -52.48 -0.37 0.54 16 LS Contribution 412.25 15.07 6.21 6.21 Total: -1.00 -31.44 412.25 -9.06 -40.50 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.84 Total: 6.75 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -4.00 Total: 6.27 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.45 Total: -54.77 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.14 Total: -20.68 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.44 -9.06 -40.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132068907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.271 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds