Wall clock time and date at job start Tue Mar 31 2020 05:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00008 * 2 1 4 4 H 1.48495 * 109.47550 * 89.99775 * 3 2 1 5 5 H 1.48511 * 109.47116 * 209.99923 * 3 2 1 6 6 H 1.48499 * 109.47060 * 329.99353 * 3 2 1 7 7 C 1.37883 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 5.23736 * 7 2 1 9 9 C 1.50704 * 119.99782 * 185.23007 * 7 2 1 10 10 O 1.42891 * 112.94610 * 52.32111 * 9 7 2 11 11 C 1.53945 * 113.73960 * 280.58000 * 9 7 2 12 12 N 1.47582 * 86.11797 * 222.05041 * 11 9 7 13 13 C 1.34776 * 134.49131 * 204.64457 * 12 11 9 14 14 O 1.21281 * 119.99710 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00331 * 359.97438 * 13 12 11 16 16 S 1.81394 * 109.47129 * 180.02562 * 15 13 12 17 17 C 1.76206 * 103.00016 * 179.97438 * 16 15 13 18 18 C 1.39005 * 120.07399 * 359.73210 * 17 16 15 19 19 C 1.38071 * 119.93789 * 179.69755 * 18 17 16 20 20 C 1.38305 * 120.08758 * 0.57021 * 19 18 17 21 21 C 1.38375 * 120.15286 * 359.72413 * 20 19 18 22 22 Br 1.89101 * 119.96797 * 179.97438 * 21 20 19 23 23 C 1.38191 * 120.06000 * 359.97438 * 21 20 19 24 24 C 1.47579 * 91.01427 * 24.64505 * 12 11 9 25 25 H 0.97008 * 119.99681 * 174.95530 * 1 2 3 26 26 H 0.96707 * 113.99791 * 304.09314 * 10 9 7 27 27 H 1.09003 * 113.77282 * 336.35677 * 11 9 7 28 28 H 1.09009 * 113.76274 * 107.75196 * 11 9 7 29 29 H 1.08998 * 109.46957 * 300.00592 * 15 13 12 30 30 H 1.09008 * 109.46933 * 60.00266 * 15 13 12 31 31 H 1.08007 * 120.02632 * 359.96777 * 18 17 16 32 32 H 1.07998 * 119.95033 * 180.27201 * 19 18 17 33 33 H 1.07998 * 119.92141 * 179.74295 * 20 19 18 34 34 H 1.07998 * 120.04615 * 180.02562 * 23 21 20 35 35 H 1.08998 * 113.77112 * 221.06054 * 24 12 11 36 36 H 1.09000 * 113.87384 * 89.66748 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5468 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4680 -2.1275 -0.0844 9 6 3.5069 -1.1967 0.1195 10 8 3.9785 -0.4412 1.2369 11 6 4.2336 -0.8768 -1.1994 12 7 5.1662 -1.9598 -0.8316 13 6 6.4458 -2.2496 -1.1399 14 8 6.9722 -3.2389 -0.6760 15 6 7.2223 -1.3451 -2.0618 16 16 8.8998 -2.0000 -2.2798 17 6 9.6430 -0.8313 -3.3692 18 6 8.9105 0.2575 -3.8276 19 6 9.4976 1.1749 -4.6761 20 6 10.8096 1.0055 -5.0798 21 6 11.5403 -0.0804 -4.6307 22 35 13.3334 -0.3074 -5.1865 23 6 10.9608 -0.9990 -3.7763 24 6 4.1349 -2.5980 0.0092 25 1 -0.4850 -0.8369 -0.0739 26 1 3.6757 0.4772 1.2467 27 1 3.6421 -1.0897 -2.0898 28 1 4.6935 0.1113 -1.2190 29 1 6.7227 -1.2971 -3.0293 30 1 7.2753 -0.3455 -1.6303 31 1 7.8844 0.3881 -3.5167 32 1 8.9301 2.0234 -5.0289 33 1 11.2648 1.7225 -5.7469 34 1 11.5314 -1.8462 -3.4255 35 1 4.5159 -2.9842 0.9546 36 1 3.5135 -3.3171 -0.5245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170601786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:50 Heat of formation + Delta-G solvation = -5.015481 kcal Electronic energy + Delta-G solvation = -22015.200377 eV Core-core repulsion = 18445.784130 eV Total energy + Delta-G solvation = -3569.416248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 370.998 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.94431 -39.40590 -37.82935 -34.55313 -32.89374 -32.71971 -31.49430 -30.94150 -29.53482 -28.15992 -25.77414 -24.86465 -23.36460 -22.66576 -20.36485 -19.00157 -18.17826 -17.91484 -16.92373 -16.57152 -16.09952 -15.76958 -15.73198 -15.27176 -14.69655 -14.53634 -13.97190 -13.86529 -13.74624 -13.54246 -13.38512 -12.78418 -12.64080 -12.24089 -12.13374 -11.99156 -11.62708 -11.49671 -11.40729 -10.93614 -10.69278 -10.51648 -10.37457 -10.10592 -10.04859 -9.71618 -9.60254 -9.18519 -9.12582 -8.69726 -8.24093 -7.63029 -6.81213 -4.58043 0.63578 0.82285 0.97815 1.32704 2.12689 2.74708 2.97956 3.02997 3.14221 3.17856 3.22445 4.07323 4.39634 4.40891 4.59617 4.66109 4.69433 4.79253 4.96268 5.00791 5.07070 5.10474 5.35338 5.42952 5.68826 5.77987 5.82080 5.88530 5.91164 6.06509 6.18454 6.21840 6.29117 6.46527 7.37219 7.96739 8.03078 8.28354 8.34986 8.49138 9.17846 10.54810 Molecular weight = 371.00amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.001988 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.026573 B =14082.611125 C =15037.729747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.034 3.966 3 Si 1.032 2.968 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.279 1.279 7 C -0.611 4.611 8 H 0.073 0.927 9 C 0.198 3.802 10 O -0.554 6.554 11 C 0.056 3.944 12 N -0.629 5.629 13 C 0.548 3.452 14 O -0.540 6.540 15 C -0.145 4.145 16 S -0.019 6.019 17 C -0.093 4.093 18 C -0.123 4.123 19 C -0.090 4.090 20 C -0.103 4.103 21 C -0.071 4.071 22 Br -0.048 7.048 23 C -0.074 4.074 24 C 0.130 3.870 25 H 0.275 0.725 26 H 0.355 0.645 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.077 0.923 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.234 4.113 -12.690 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.174 4.174 3 Si 0.861 3.139 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.205 1.205 7 C -0.649 4.649 8 H 0.091 0.909 9 C 0.157 3.843 10 O -0.364 6.364 11 C -0.067 4.067 12 N -0.363 5.363 13 C 0.335 3.665 14 O -0.419 6.419 15 C -0.297 4.297 16 S 0.227 5.773 17 C -0.207 4.207 18 C -0.148 4.148 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.152 4.152 22 Br 0.037 6.963 23 C -0.100 4.100 24 C 0.009 3.991 25 H 0.085 0.915 26 H 0.206 0.794 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.095 0.905 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 23.800 3.454 -11.906 26.836 hybrid contribution -1.157 0.208 -0.828 1.438 sum 22.644 3.663 -12.734 26.236 Atomic orbital electron populations 1.70762 1.06660 1.31376 1.43295 1.25825 0.96544 1.02464 0.92538 0.84279 0.75602 0.76174 0.77858 1.20156 1.19530 1.20500 1.22252 0.89395 0.96256 1.56985 0.90917 1.20489 0.93327 0.88517 0.81954 1.86467 1.76308 1.25743 1.47837 1.24858 0.88951 0.89930 1.02917 1.50071 1.08961 1.29078 1.48191 1.19016 0.81313 0.85065 0.81150 1.90714 1.68631 1.28236 1.54304 1.23813 0.97156 1.04247 1.04434 1.86264 1.07446 1.29475 1.54151 1.22199 0.97227 0.99579 1.01706 1.21394 1.00175 0.94331 0.98891 1.21102 0.94455 0.98860 0.96664 1.21118 0.94434 0.96741 1.00275 1.21672 0.92054 0.99139 1.02327 1.96737 1.12211 1.97507 1.89843 1.20639 0.93294 0.99040 0.97022 1.23319 0.85048 0.97013 0.93750 0.91472 0.79449 0.88605 0.90820 0.86642 0.86605 0.85147 0.84627 0.84792 0.84399 0.90467 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 13.70 55.43 0.76 -23.64 16 2 C 0.03 0.86 5.47 -17.82 -0.10 0.77 16 3 Si 1.03 20.83 24.79 -169.99 -4.21 16.61 16 4 H -0.27 -5.31 6.95 56.52 0.39 -4.91 16 5 H -0.27 -4.66 4.86 56.52 0.27 -4.39 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.61 -15.03 9.04 -34.44 -0.31 -15.34 16 8 H 0.07 1.92 8.04 -52.49 -0.42 1.50 16 9 C 0.20 4.25 1.06 -90.84 -0.10 4.15 16 10 O -0.55 -12.21 13.42 -35.23 -0.47 -12.68 16 11 C 0.06 1.01 6.78 -2.97 -0.02 0.99 16 12 N -0.63 -11.66 3.61 -178.30 -0.64 -12.30 16 13 C 0.55 9.79 8.08 -10.99 -0.09 9.70 16 14 O -0.54 -11.33 16.59 5.56 0.09 -11.24 16 15 C -0.15 -1.93 4.57 36.00 0.16 -1.77 16 16 S -0.02 -0.25 21.06 -107.50 -2.26 -2.51 16 17 C -0.09 -1.05 6.11 -39.04 -0.24 -1.29 16 18 C -0.12 -1.20 9.36 -39.36 -0.37 -1.57 16 19 C -0.09 -0.75 10.04 -39.62 -0.40 -1.14 16 20 C -0.10 -0.87 9.78 -39.51 -0.39 -1.25 16 21 C -0.07 -0.68 6.22 -39.55 -0.25 -0.93 16 22 Br -0.05 -0.42 33.70 -68.01 -2.29 -2.71 16 23 C -0.07 -0.78 9.53 -39.34 -0.37 -1.16 16 24 C 0.13 2.60 8.23 -2.97 -0.02 2.57 16 25 H 0.27 7.53 8.72 -40.82 -0.36 7.17 16 26 H 0.35 7.20 4.23 45.56 0.19 7.39 16 27 H 0.10 1.64 8.09 -51.93 -0.42 1.22 16 28 H 0.07 1.21 6.54 -51.92 -0.34 0.87 16 29 H 0.12 1.29 7.73 -51.92 -0.40 0.88 16 30 H 0.12 1.36 7.76 -51.92 -0.40 0.96 16 31 H 0.13 1.13 5.88 -52.48 -0.31 0.82 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -29.33 337.44 -9.94 -39.26 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -3.50 Total: 10.40 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -2.49 Total: -6.27 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.12 Total: -35.94 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.38 Total: -23.93 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.21 Total: 16.61 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.26 Total: -2.51 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.29 Total: -2.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.33 -9.94 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170601786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.246 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds