Wall clock time and date at job start Tue Mar 31 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30445 * 125.98002 * 2 1 4 4 N 1.39917 * 108.96737 * 179.97438 * 3 2 1 5 5 C 1.46503 * 125.74872 * 179.97438 * 4 3 2 6 6 C 1.34416 * 108.51071 * 359.72644 * 4 3 2 7 7 C 1.50704 * 126.31875 * 180.26761 * 6 4 3 8 8 C 1.38281 * 107.35931 * 0.42875 * 6 4 3 9 9 C 1.46969 * 126.43672 * 179.83306 * 8 6 4 10 10 C 1.35061 * 119.99999 * 242.99423 * 9 8 6 11 11 C 1.41792 * 119.99875 * 7.89519 * 10 9 8 12 12 O 1.21754 * 120.00537 * 4.37436 * 11 10 9 13 13 N 1.34780 * 119.99615 * 184.37436 * 11 10 9 14 14 C 1.40053 * 119.99575 * 186.02046 * 13 11 10 15 15 C 1.38673 * 120.10367 * 19.68552 * 14 13 11 16 16 C 1.38244 * 120.00516 * 179.97438 * 15 14 13 17 17 C 1.38295 * 120.21344 * 359.97438 * 16 15 14 18 18 C 1.38201 * 120.20608 * 359.97438 * 17 16 15 19 19 C 1.38777 * 119.99085 * 359.97438 * 18 17 16 20 20 S 1.76204 * 120.10803 * 180.02562 * 19 18 17 21 21 C 1.81401 * 102.99802 * 0.02562 * 20 19 18 22 22 C 1.50697 * 109.46951 * 179.97438 * 21 20 19 23 23 H 1.07998 * 120.00210 * 359.97438 * 22 21 20 24 24 C 1.37879 * 119.99929 * 179.97438 * 22 21 20 25 25 N 1.31517 * 120.00348 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 120.00090 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47194 * 89.99961 * 26 24 22 28 28 H 1.48492 * 109.47109 * 210.00079 * 26 24 22 29 29 H 1.48503 * 109.47101 * 329.99990 * 26 24 22 30 30 H 1.09007 * 109.47156 * 275.37808 * 1 2 3 31 31 H 1.09005 * 109.47279 * 35.37327 * 1 2 3 32 32 H 1.08998 * 109.47482 * 155.37529 * 1 2 3 33 33 H 1.09002 * 109.47121 * 90.01807 * 5 4 3 34 34 H 1.08999 * 109.47252 * 210.02340 * 5 4 3 35 35 H 1.08997 * 109.46460 * 330.02165 * 5 4 3 36 36 H 1.08996 * 109.47039 * 270.19579 * 7 6 4 37 37 H 1.08994 * 109.46873 * 30.19409 * 7 6 4 38 38 H 1.08995 * 109.46834 * 150.19126 * 7 6 4 39 39 H 1.07999 * 120.00389 * 62.99357 * 9 8 6 40 40 H 1.08001 * 119.99983 * 187.89952 * 10 9 8 41 41 H 0.97002 * 120.00357 * 6.02487 * 13 11 10 42 42 H 1.08002 * 119.99390 * 359.97438 * 15 14 13 43 43 H 1.07999 * 119.89490 * 180.02562 * 16 15 14 44 44 H 1.08007 * 119.89576 * 180.28110 * 17 16 15 45 45 H 1.08004 * 120.00928 * 180.02562 * 18 17 16 46 46 H 1.09008 * 109.46969 * 299.99952 * 21 20 19 47 47 H 1.09003 * 109.47455 * 59.99415 * 21 20 19 48 48 H 0.96995 * 120.00517 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0556 0.0000 4 7 3.6113 0.6462 0.0006 5 6 4.7777 1.5328 0.0002 6 6 3.6465 -0.6975 0.0070 7 6 4.8836 -1.5580 0.0156 8 6 2.3379 -1.1444 0.0007 9 6 1.8941 -2.5455 0.0009 10 6 1.1895 -3.0308 -1.0442 11 6 1.0213 -2.2446 -2.2121 12 8 1.5775 -1.1655 -2.3050 13 7 0.2455 -2.6917 -3.2195 14 6 0.1790 -1.9772 -4.4222 15 6 1.1766 -1.0712 -4.7490 16 6 1.1092 -0.3674 -5.9370 17 6 0.0491 -0.5639 -6.8031 18 6 -0.9494 -1.4654 -6.4867 19 6 -0.8897 -2.1773 -5.2969 20 16 -2.1607 -3.3280 -4.8907 21 6 -3.2818 -3.2164 -6.3124 22 6 -4.4410 -4.1585 -6.1132 23 1 -4.4975 -4.7641 -5.2207 24 6 -5.4296 -4.2472 -7.0702 25 7 -6.4410 -5.0697 -6.8966 26 14 -5.3323 -3.1992 -8.6135 27 1 -4.5910 -3.9375 -9.6674 28 1 -6.7045 -2.8964 -9.0935 29 1 -4.6241 -1.9306 -8.3066 30 1 -0.3634 0.0963 1.0232 31 1 -0.3634 0.8380 -0.5949 32 1 -0.3634 -0.9342 -0.4282 33 1 5.0669 1.7531 1.0278 34 1 5.6055 1.0439 -0.5134 35 1 4.5283 2.4609 -0.5140 36 1 5.1876 -1.7674 -1.0100 37 1 5.6872 -1.0338 0.5329 38 1 4.6709 -2.4950 0.5301 39 1 2.1312 -3.1871 0.8367 40 1 0.7543 -4.0178 -0.9904 41 1 -0.2669 -3.5083 -3.1115 42 1 2.0063 -0.9153 -4.0754 43 1 1.8874 0.3375 -6.1900 44 1 0.0039 -0.0146 -7.7320 45 1 -1.7756 -1.6167 -7.1656 46 1 -3.6539 -2.1958 -6.4025 47 1 -2.7447 -3.4888 -7.2210 48 1 -7.1367 -5.1319 -7.5697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221745928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:01 Heat of formation + Delta-G solvation = 93.668001 kcal Electronic energy + Delta-G solvation = -30563.971754 eV Core-core repulsion = 26519.654219 eV Total energy + Delta-G solvation = -4044.317535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.41355 -40.35891 -38.24315 -35.01213 -34.31060 -33.68120 -33.16718 -31.48656 -30.83695 -29.61817 -29.48567 -29.26581 -27.08564 -25.76516 -23.98458 -22.87968 -22.73804 -21.47353 -20.50540 -19.51204 -19.14023 -17.76598 -17.31869 -16.89408 -16.64179 -16.06294 -15.88044 -15.14381 -15.01063 -14.77699 -14.39294 -14.11544 -13.92034 -13.89746 -13.68676 -13.45544 -13.41996 -13.32241 -13.18458 -13.10653 -12.84144 -12.76841 -12.52956 -12.48779 -12.23841 -12.05005 -11.95893 -11.81001 -11.29887 -10.90458 -10.63270 -10.54176 -10.34957 -10.26789 -9.80495 -9.74111 -9.57271 -9.25804 -9.24757 -9.07562 -8.78459 -7.96153 -7.94775 -6.66274 -6.27541 -4.31498 0.88205 1.57449 1.69836 1.84082 2.26661 2.39537 2.76879 3.15731 3.22100 3.24578 3.27821 3.34548 3.47516 4.09899 4.23174 4.31305 4.41020 4.67674 4.82571 4.85255 4.89678 5.01420 5.03769 5.10543 5.14190 5.19118 5.23839 5.29893 5.37224 5.46669 5.52857 5.59567 5.68736 5.78328 5.79400 5.90003 5.94129 6.10913 6.15038 6.18192 6.43628 6.46823 6.53952 6.54898 6.66696 6.70344 6.82368 6.93760 7.28027 7.29560 7.59065 7.75554 8.17888 8.26232 8.72246 9.27343 10.84047 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.002212 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.475792 B =12654.752974 C =13383.173387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.130 3.870 3 N -0.302 5.302 4 N -0.370 5.370 5 C 0.104 3.896 6 C 0.098 3.902 7 C -0.090 4.090 8 C -0.210 4.210 9 C 0.037 3.963 10 C -0.227 4.227 11 C 0.542 3.458 12 O -0.507 6.507 13 N -0.660 5.660 14 C 0.162 3.838 15 C -0.124 4.124 16 C -0.120 4.120 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.109 4.109 20 S -0.134 6.134 21 C 0.034 3.966 22 C -0.520 4.520 23 H 0.085 0.915 24 C 0.083 3.917 25 N -0.887 5.887 26 Si 0.876 3.124 27 H -0.272 1.272 28 H -0.281 1.281 29 H -0.264 1.264 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.413 0.587 42 H 0.152 0.848 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.127 0.873 46 H 0.043 0.957 47 H 0.038 0.962 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.864 7.962 14.115 28.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.037 4.037 3 N -0.123 5.123 4 N -0.151 5.151 5 C -0.038 4.038 6 C -0.030 4.030 7 C -0.148 4.148 8 C -0.221 4.221 9 C 0.016 3.984 10 C -0.248 4.248 11 C 0.334 3.666 12 O -0.384 6.384 13 N -0.303 5.303 14 C 0.061 3.939 15 C -0.145 4.145 16 C -0.142 4.142 17 C -0.144 4.144 18 C -0.142 4.142 19 C -0.225 4.225 20 S 0.112 5.888 21 C -0.113 4.113 22 C -0.559 4.559 23 H 0.103 0.897 24 C -0.122 4.122 25 N -0.524 5.524 26 Si 0.702 3.298 27 H -0.197 1.197 28 H -0.206 1.206 29 H -0.189 1.189 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.250 0.750 42 H 0.169 0.831 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.145 0.855 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 24.029 9.214 14.999 29.787 hybrid contribution -0.314 -0.033 -2.181 2.203 sum 23.715 9.182 12.818 28.478 Atomic orbital electron populations 1.20170 0.87008 1.03584 1.02315 1.22085 0.96162 0.89295 0.96169 1.77002 0.85914 1.22716 1.26691 1.47883 1.05518 1.03908 1.57748 1.21770 0.84483 0.94648 1.02906 1.21263 0.95956 0.84564 1.01232 1.20424 0.92570 0.98462 1.03346 1.18734 0.91135 0.93330 1.18941 1.21662 0.89959 0.91625 0.95115 1.22033 1.06343 1.01824 0.94624 1.17297 0.79350 0.86245 0.83678 1.90808 1.46757 1.20846 1.80028 1.43614 1.46441 1.27589 1.12696 1.17231 0.94143 0.96410 0.86148 1.21477 0.98724 0.96808 0.97499 1.20952 0.98552 1.00323 0.94329 1.20979 0.94872 0.98928 0.99659 1.21086 0.99933 0.97231 0.95950 1.21855 0.98595 1.03585 0.98450 1.85061 1.20591 1.48306 1.34804 1.21707 0.96235 1.01359 0.92048 1.20393 1.03945 1.23379 1.08206 0.89683 1.24824 0.94583 0.94920 0.97876 1.69848 1.10960 1.36170 1.35395 0.86840 0.78091 0.81350 0.83540 1.19712 1.20624 1.18912 0.90837 0.90770 0.90871 0.91084 0.89812 0.89349 0.90165 0.91249 0.89741 0.85107 0.84845 0.74986 0.83078 0.86415 0.86378 0.85497 0.93861 0.94368 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 9.95 36.01 0.36 -0.52 16 2 C 0.13 1.76 5.58 -81.97 -0.46 1.30 16 3 N -0.30 -4.33 12.49 33.92 0.42 -3.91 16 4 N -0.37 -4.19 3.98 -63.24 -0.25 -4.44 16 5 C 0.10 0.70 11.06 59.85 0.66 1.36 16 6 C 0.10 1.02 7.02 -81.44 -0.57 0.45 16 7 C -0.09 -0.56 9.71 36.01 0.35 -0.21 16 8 C -0.21 -2.44 3.84 -105.13 -0.40 -2.85 16 9 C 0.04 0.34 9.46 -37.18 -0.35 -0.01 16 10 C -0.23 -2.27 9.21 -39.35 -0.36 -2.63 16 11 C 0.54 7.32 6.23 -14.90 -0.09 7.23 16 12 O -0.51 -7.93 9.49 5.14 0.05 -7.88 16 13 N -0.66 -9.61 5.23 -12.26 -0.06 -9.67 16 14 C 0.16 2.74 6.51 -83.45 -0.54 2.20 16 15 C -0.12 -2.00 8.78 -39.42 -0.35 -2.35 16 16 C -0.12 -1.78 10.04 -39.56 -0.40 -2.18 16 17 C -0.12 -1.90 10.04 -39.57 -0.40 -2.30 16 18 C -0.12 -2.09 9.36 -39.40 -0.37 -2.46 16 19 C -0.11 -2.02 6.12 -38.90 -0.24 -2.26 16 20 S -0.13 -2.71 20.48 -107.50 -2.20 -4.91 16 21 C 0.03 0.80 3.16 36.00 0.11 0.92 16 22 C -0.52 -14.32 9.68 -34.44 -0.33 -14.65 16 23 H 0.09 2.54 7.96 -52.49 -0.42 2.12 16 24 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 25 N -0.89 -26.11 13.96 55.43 0.77 -25.33 16 26 Si 0.88 20.51 27.47 -169.99 -4.67 15.84 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.90 6.23 -51.93 -0.32 0.57 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.37 7.65 -51.93 -0.40 -0.02 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.30 7.72 -51.93 -0.40 -0.10 16 38 H 0.08 0.41 7.97 -51.93 -0.41 0.00 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.41 5.59 7.46 -40.82 -0.30 5.28 16 42 H 0.15 2.49 5.43 -52.49 -0.28 2.21 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 45 H 0.13 2.31 5.88 -52.48 -0.31 2.01 16 46 H 0.04 1.01 6.80 -51.92 -0.35 0.66 16 47 H 0.04 0.87 7.18 -51.92 -0.37 0.50 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 406.59 15.07 6.13 6.13 Total: -1.00 -34.26 406.59 -9.84 -44.10 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.55 Total: 6.82 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -3.48 Total: -16.74 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.88 Total: -43.35 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.05 Total: -7.88 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.20 Total: -4.91 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.26 -9.84 -44.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221745928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.771 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds