Wall clock time and date at job start Tue Mar 31 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30445 * 125.98002 * 2 1 4 4 N 1.39917 * 108.96737 * 179.97438 * 3 2 1 5 5 C 1.46503 * 125.74872 * 179.97438 * 4 3 2 6 6 C 1.34416 * 108.51071 * 359.72644 * 4 3 2 7 7 C 1.50704 * 126.31875 * 180.26761 * 6 4 3 8 8 C 1.38281 * 107.35931 * 0.42875 * 6 4 3 9 9 C 1.46969 * 126.43672 * 179.83306 * 8 6 4 10 10 C 1.35061 * 119.99999 * 242.99423 * 9 8 6 11 11 C 1.41792 * 119.99875 * 7.89519 * 10 9 8 12 12 O 1.21754 * 120.00537 * 4.37436 * 11 10 9 13 13 N 1.34780 * 119.99615 * 184.37436 * 11 10 9 14 14 C 1.40053 * 119.99575 * 186.02046 * 13 11 10 15 15 C 1.38673 * 120.10367 * 19.68552 * 14 13 11 16 16 C 1.38244 * 120.00516 * 179.97438 * 15 14 13 17 17 C 1.38295 * 120.21344 * 359.97438 * 16 15 14 18 18 C 1.38201 * 120.20608 * 359.97438 * 17 16 15 19 19 C 1.38777 * 119.99085 * 359.97438 * 18 17 16 20 20 S 1.76204 * 120.10803 * 180.02562 * 19 18 17 21 21 C 1.81401 * 102.99802 * 0.02562 * 20 19 18 22 22 C 1.50697 * 109.46951 * 179.97438 * 21 20 19 23 23 H 1.07998 * 120.00210 * 359.97438 * 22 21 20 24 24 C 1.37879 * 119.99929 * 179.97438 * 22 21 20 25 25 N 1.31517 * 120.00348 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 120.00090 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47194 * 89.99961 * 26 24 22 28 28 H 1.48492 * 109.47109 * 210.00079 * 26 24 22 29 29 H 1.48503 * 109.47101 * 329.99990 * 26 24 22 30 30 H 1.09007 * 109.47156 * 275.37808 * 1 2 3 31 31 H 1.09005 * 109.47279 * 35.37327 * 1 2 3 32 32 H 1.08998 * 109.47482 * 155.37529 * 1 2 3 33 33 H 1.09002 * 109.47121 * 90.01807 * 5 4 3 34 34 H 1.08999 * 109.47252 * 210.02340 * 5 4 3 35 35 H 1.08997 * 109.46460 * 330.02165 * 5 4 3 36 36 H 1.08996 * 109.47039 * 270.19579 * 7 6 4 37 37 H 1.08994 * 109.46873 * 30.19409 * 7 6 4 38 38 H 1.08995 * 109.46834 * 150.19126 * 7 6 4 39 39 H 1.07999 * 120.00389 * 62.99357 * 9 8 6 40 40 H 1.08001 * 119.99983 * 187.89952 * 10 9 8 41 41 H 0.97002 * 120.00357 * 6.02487 * 13 11 10 42 42 H 1.08002 * 119.99390 * 359.97438 * 15 14 13 43 43 H 1.07999 * 119.89490 * 180.02562 * 16 15 14 44 44 H 1.08007 * 119.89576 * 180.28110 * 17 16 15 45 45 H 1.08004 * 120.00928 * 180.02562 * 18 17 16 46 46 H 1.09008 * 109.46969 * 299.99952 * 21 20 19 47 47 H 1.09003 * 109.47455 * 59.99415 * 21 20 19 48 48 H 0.96995 * 120.00517 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0556 0.0000 4 7 3.6113 0.6462 0.0006 5 6 4.7777 1.5328 0.0002 6 6 3.6465 -0.6975 0.0070 7 6 4.8836 -1.5580 0.0156 8 6 2.3379 -1.1444 0.0007 9 6 1.8941 -2.5455 0.0009 10 6 1.1895 -3.0308 -1.0442 11 6 1.0213 -2.2446 -2.2121 12 8 1.5775 -1.1655 -2.3050 13 7 0.2455 -2.6917 -3.2195 14 6 0.1790 -1.9772 -4.4222 15 6 1.1766 -1.0712 -4.7490 16 6 1.1092 -0.3674 -5.9370 17 6 0.0491 -0.5639 -6.8031 18 6 -0.9494 -1.4654 -6.4867 19 6 -0.8897 -2.1773 -5.2969 20 16 -2.1607 -3.3280 -4.8907 21 6 -3.2818 -3.2164 -6.3124 22 6 -4.4410 -4.1585 -6.1132 23 1 -4.4975 -4.7641 -5.2207 24 6 -5.4296 -4.2472 -7.0702 25 7 -6.4410 -5.0697 -6.8966 26 14 -5.3323 -3.1992 -8.6135 27 1 -4.5910 -3.9375 -9.6674 28 1 -6.7045 -2.8964 -9.0935 29 1 -4.6241 -1.9306 -8.3066 30 1 -0.3634 0.0963 1.0232 31 1 -0.3634 0.8380 -0.5949 32 1 -0.3634 -0.9342 -0.4282 33 1 5.0669 1.7531 1.0278 34 1 5.6055 1.0439 -0.5134 35 1 4.5283 2.4609 -0.5140 36 1 5.1876 -1.7674 -1.0100 37 1 5.6872 -1.0338 0.5329 38 1 4.6709 -2.4950 0.5301 39 1 2.1312 -3.1871 0.8367 40 1 0.7543 -4.0178 -0.9904 41 1 -0.2669 -3.5083 -3.1115 42 1 2.0063 -0.9153 -4.0754 43 1 1.8874 0.3375 -6.1900 44 1 0.0039 -0.0146 -7.7320 45 1 -1.7756 -1.6167 -7.1656 46 1 -3.6539 -2.1958 -6.4025 47 1 -2.7447 -3.4888 -7.2210 48 1 -7.1367 -5.1319 -7.5697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221745928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:00 Heat of formation + Delta-G solvation = 73.486889 kcal Electronic energy + Delta-G solvation = -30564.846873 eV Core-core repulsion = 26519.654219 eV Total energy + Delta-G solvation = -4045.192654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.26168 -41.43548 -39.42564 -36.02593 -35.30463 -35.20411 -34.46914 -32.32900 -32.13657 -31.29546 -30.54608 -30.36853 -27.82438 -26.52294 -25.20653 -24.51632 -24.03301 -22.67487 -21.46409 -20.30846 -20.10967 -19.36009 -18.60110 -18.27199 -17.85791 -16.92225 -16.72932 -16.56483 -16.24033 -16.02482 -15.69569 -15.23767 -15.11439 -14.94536 -14.90540 -14.71199 -14.45837 -14.39234 -14.23227 -14.20259 -13.85985 -13.83610 -13.60248 -13.38324 -13.18347 -12.98659 -12.80296 -12.74889 -12.68050 -12.64050 -12.20340 -12.09868 -11.75458 -11.52718 -11.48472 -10.99660 -10.93270 -10.75034 -10.57875 -10.45040 -9.92329 -9.22077 -8.77234 -8.40933 -8.18023 -6.51340 -0.02253 0.30135 0.54403 0.70108 1.01966 1.32366 1.33748 1.43588 1.71756 1.72768 1.88047 2.25051 2.26143 2.36907 2.85263 2.92076 3.61416 3.76567 3.84705 4.00045 4.07882 4.18837 4.25627 4.33495 4.37545 4.40494 4.46357 4.48807 4.53052 4.54319 4.63078 4.64153 4.64510 4.68393 4.74362 4.89850 4.91251 4.95479 5.06291 5.14255 5.16068 5.25499 5.31839 5.37613 5.46648 5.52430 5.57877 5.80090 6.01515 6.05003 6.25828 6.50766 6.52208 6.89292 7.11695 7.21339 8.74190 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.002212 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.475792 B =12654.752974 C =13383.173387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.110 3.890 3 N -0.347 5.347 4 N -0.375 5.375 5 C 0.094 3.906 6 C 0.100 3.900 7 C -0.088 4.088 8 C -0.236 4.236 9 C 0.058 3.942 10 C -0.243 4.243 11 C 0.540 3.460 12 O -0.530 6.530 13 N -0.663 5.663 14 C 0.162 3.838 15 C -0.133 4.133 16 C -0.109 4.109 17 C -0.123 4.123 18 C -0.130 4.130 19 C -0.132 4.132 20 S -0.138 6.138 21 C 0.037 3.963 22 C -0.531 4.531 23 H 0.045 0.955 24 C 0.026 3.974 25 N -0.933 5.933 26 Si 0.944 3.056 27 H -0.260 1.260 28 H -0.276 1.276 29 H -0.247 1.247 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.171 0.829 40 H 0.159 0.841 41 H 0.415 0.585 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.120 0.880 46 H 0.044 0.956 47 H 0.045 0.955 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.966 8.834 14.009 31.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.056 4.056 3 N -0.169 5.169 4 N -0.156 5.156 5 C -0.046 4.046 6 C -0.029 4.029 7 C -0.146 4.146 8 C -0.247 4.247 9 C 0.038 3.962 10 C -0.264 4.264 11 C 0.334 3.666 12 O -0.409 6.409 13 N -0.307 5.307 14 C 0.060 3.940 15 C -0.155 4.155 16 C -0.130 4.130 17 C -0.143 4.143 18 C -0.155 4.155 19 C -0.247 4.247 20 S 0.106 5.894 21 C -0.111 4.111 22 C -0.570 4.570 23 H 0.063 0.937 24 C -0.175 4.175 25 N -0.572 5.572 26 Si 0.766 3.234 27 H -0.185 1.185 28 H -0.201 1.201 29 H -0.171 1.171 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.188 0.812 40 H 0.177 0.823 41 H 0.253 0.747 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.167 0.833 45 H 0.138 0.862 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 27.159 10.096 14.913 32.587 hybrid contribution -1.098 -0.224 -2.001 2.293 sum 26.060 9.872 12.913 30.714 Atomic orbital electron populations 1.20129 0.87169 1.02487 1.02945 1.22285 0.96488 0.90198 0.96659 1.76890 0.87712 1.23913 1.28409 1.48256 1.05343 1.04980 1.57007 1.22105 0.83782 0.94261 1.04485 1.21953 0.97066 0.84592 0.99266 1.20583 0.91296 0.98699 1.03997 1.19094 0.91578 0.94075 1.19945 1.22050 0.87851 0.90800 0.95515 1.22112 1.07892 1.02719 0.93653 1.17878 0.78383 0.86173 0.84124 1.90797 1.47657 1.21977 1.80491 1.43738 1.46904 1.27582 1.12443 1.17405 0.93633 0.96407 0.86582 1.21601 0.98576 0.97113 0.98197 1.21344 0.98791 0.99608 0.93231 1.21273 0.93951 0.98241 1.00824 1.21217 1.00626 0.97976 0.95668 1.21805 0.98656 1.04408 0.99845 1.84901 1.21159 1.49970 1.33359 1.21460 0.95723 1.00048 0.93891 1.20568 1.05774 1.23690 1.06973 0.93690 1.25788 0.93954 0.96195 1.01572 1.69988 1.12052 1.38132 1.36995 0.85748 0.78541 0.80122 0.78954 1.18461 1.20135 1.17061 0.89192 0.92536 0.91318 0.89211 0.87191 0.89924 0.89995 0.88954 0.87969 0.81171 0.82307 0.74707 0.83304 0.83332 0.83335 0.86174 0.93768 0.93638 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.72 9.95 71.24 0.71 -1.02 16 2 C 0.11 2.97 5.58 43.55 0.24 3.21 16 3 N -0.35 -10.01 12.49 -46.59 -0.58 -10.59 16 4 N -0.37 -8.05 3.98 -353.99 -1.41 -9.46 16 5 C 0.09 1.10 11.06 127.77 1.41 2.51 16 6 C 0.10 1.89 7.02 42.17 0.30 2.18 16 7 C -0.09 -0.79 9.71 71.24 0.69 -0.10 16 8 C -0.24 -5.16 3.84 -20.19 -0.08 -5.24 16 9 C 0.06 0.92 9.46 23.83 0.23 1.15 16 10 C -0.24 -4.47 9.21 22.42 0.21 -4.26 16 11 C 0.54 14.30 6.23 85.12 0.53 14.83 16 12 O -0.53 -16.44 9.49 -4.52 -0.04 -16.49 16 13 N -0.66 -19.25 5.23 -310.90 -1.62 -20.87 16 14 C 0.16 5.42 6.51 38.25 0.25 5.66 16 15 C -0.13 -4.16 8.78 22.38 0.20 -3.97 16 16 C -0.11 -2.97 10.04 22.28 0.22 -2.74 16 17 C -0.12 -3.47 10.04 22.27 0.22 -3.24 16 18 C -0.13 -4.51 9.36 22.39 0.21 -4.30 16 19 C -0.13 -4.85 6.12 22.71 0.14 -4.71 16 20 S -0.14 -5.73 20.48 -56.49 -1.16 -6.89 16 21 C 0.04 1.74 3.16 71.24 0.23 1.97 16 22 C -0.53 -30.20 9.68 25.60 0.25 -29.95 16 23 H 0.04 2.84 7.96 -2.91 -0.02 2.82 16 24 C 0.03 1.47 5.47 84.65 0.46 1.93 16 25 N -0.93 -56.52 13.96 21.45 0.30 -56.22 16 26 Si 0.94 42.18 27.47 68.60 1.88 44.07 16 27 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 29 H -0.25 -10.25 6.54 99.48 0.65 -9.60 16 30 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.07 1.73 6.23 -2.39 -0.01 1.72 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.67 7.65 -2.39 -0.02 0.66 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.42 7.72 -2.39 -0.02 0.40 16 38 H 0.10 0.58 7.97 -2.39 -0.02 0.56 16 39 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.42 11.32 7.46 -92.71 -0.69 10.63 16 42 H 0.15 4.79 5.43 -2.91 -0.02 4.77 16 43 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 44 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 45 H 0.12 4.26 5.88 -2.91 -0.02 4.24 16 46 H 0.04 2.06 6.80 -2.39 -0.02 2.05 16 47 H 0.05 2.07 7.18 -2.39 -0.02 2.05 16 48 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -78.01 406.59 4.03 -73.97 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.25 Total: 28.55 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 6.41 Total: -26.08 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -3.32 Total: -97.14 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.04 Total: -16.49 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.88 Total: 44.07 kcal Atomic # 16 Polarization: -5.73 SS G_CDS: -1.16 Total: -6.89 kcal Total: -78.01 4.03 -73.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221745928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.461 kcal (2) G-P(sol) polarization free energy of solvation -78.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds