Wall clock time and date at job start Tue Mar 31 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86795 * 120.00364 * 2 1 4 4 H 1.48500 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47396 * 300.00166 * 3 2 1 6 6 H 1.48500 * 109.46921 * 60.00080 * 3 2 1 7 7 C 1.38951 * 119.99553 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00293 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00197 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00205 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99780 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00279 * 180.02562 * 10 9 7 13 13 C 1.53038 * 109.46444 * 179.97438 * 12 10 9 14 14 C 1.53187 * 109.31606 * 181.38763 * 13 12 10 15 15 N 1.46926 * 108.77227 * 305.36475 * 14 13 12 16 16 S 1.65607 * 120.62900 * 233.33374 * 15 14 13 17 17 O 1.42100 * 106.40189 * 203.53875 * 16 15 14 18 18 O 1.42100 * 106.40342 * 336.46176 * 16 15 14 19 19 C 1.76204 * 107.21651 * 90.00316 * 16 15 14 20 20 C 1.38243 * 119.98042 * 269.72533 * 19 16 15 21 21 C 1.38216 * 120.00833 * 179.73088 * 20 19 16 22 22 C 1.38355 * 119.98869 * 0.54281 * 21 20 19 23 23 Cl 1.73596 * 120.01687 * 179.75162 * 22 21 20 24 24 C 1.38357 * 119.97106 * 359.72963 * 22 21 20 25 25 C 1.38217 * 119.98604 * 0.02562 * 24 22 21 26 26 C 1.46924 * 118.73991 * 53.60881 * 15 14 13 27 27 C 1.53041 * 109.45982 * 300.06784 * 12 10 9 28 28 H 0.97002 * 119.99818 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99852 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.44899 * 60.02848 * 12 10 9 31 31 H 1.08999 * 109.49677 * 61.43167 * 13 12 10 32 32 H 1.09001 * 109.52131 * 301.35574 * 13 12 10 33 33 H 1.09002 * 109.58471 * 185.57893 * 14 13 12 34 34 H 1.08996 * 109.70613 * 65.22278 * 14 13 12 35 35 H 1.07996 * 120.00077 * 0.02562 * 20 19 16 36 36 H 1.08000 * 120.00977 * 180.27049 * 21 20 19 37 37 H 1.07995 * 120.01001 * 179.97438 * 24 22 21 38 38 H 1.08000 * 119.99538 * 180.02562 * 25 24 22 39 39 H 1.09003 * 109.58516 * 66.18182 * 26 15 14 40 40 H 1.09002 * 109.58479 * 186.60340 * 26 15 14 41 41 H 1.08999 * 109.49559 * 298.56514 * 27 12 10 42 42 H 1.08998 * 109.49600 * 58.65906 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3462 0.0006 5 1 1.8895 2.3964 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0087 -1.2034 -0.0005 8 1 3.0887 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2435 -4.8630 -0.0011 13 6 2.2381 -6.0261 -0.0016 14 6 1.4690 -7.3504 -0.0372 15 7 0.5146 -7.3731 1.0796 16 16 0.4969 -8.6376 2.1488 17 8 -0.8038 -8.6616 2.7204 18 8 1.0673 -9.7468 1.4680 19 6 1.6071 -8.2313 3.4554 20 6 2.9376 -8.5968 3.3703 21 6 3.8101 -8.2735 4.3923 22 6 3.3493 -7.5938 5.5058 23 17 4.4431 -7.1931 6.7929 24 6 2.0164 -7.2332 5.5930 25 6 1.1459 -7.5527 4.5680 26 6 -0.4280 -6.2556 1.2262 27 6 0.3620 -4.9433 1.2473 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 -0.0005 30 1 0.6176 -4.9203 -0.8918 31 1 2.8479 -5.9837 0.9008 32 1 2.8811 -5.9551 -0.8789 33 1 2.1674 -8.1814 0.0620 34 1 0.9298 -7.4371 -0.9805 35 1 3.2964 -9.1309 2.5029 36 1 4.8504 -8.5553 4.3238 37 1 1.6560 -6.7030 6.4620 38 1 0.1055 -7.2709 4.6356 39 1 -1.1221 -6.2504 0.3858 40 1 -0.9812 -6.3642 2.1591 41 1 0.9892 -4.9108 2.1382 42 1 -0.3305 -4.1016 1.2585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225525524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:38 Heat of formation + Delta-G solvation = -96.832481 kcal Electronic energy + Delta-G solvation = -29652.365468 eV Core-core repulsion = 25363.802606 eV Total energy + Delta-G solvation = -4288.562862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 372.074 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.60488 -39.25681 -37.50106 -37.28313 -36.91713 -36.04947 -34.04531 -32.41763 -31.57336 -31.38036 -31.31270 -30.82349 -25.92876 -24.20198 -23.55560 -23.42942 -23.13570 -20.89231 -19.42050 -18.90767 -18.46210 -18.01531 -17.53945 -16.74543 -16.43824 -15.97520 -15.53340 -15.07278 -14.71813 -14.54952 -14.37360 -14.16935 -14.09221 -14.01530 -14.00369 -13.38645 -13.23246 -13.14031 -12.75309 -12.45847 -12.27659 -12.16117 -12.10394 -12.09399 -11.95062 -11.57368 -11.36170 -11.28476 -11.18144 -11.12483 -11.04285 -10.50290 -10.38986 -10.37834 -10.19803 -9.57207 -9.52135 -9.51447 -9.17761 -8.36631 -8.01838 -6.47000 -3.87691 0.05732 0.36483 0.82782 1.62103 2.63315 3.05216 3.12249 3.23611 3.30402 3.55001 3.83880 3.98085 4.12868 4.33918 4.39926 4.54200 4.76413 4.79698 4.87177 4.97936 5.10453 5.16962 5.18433 5.32971 5.42255 5.43628 5.46421 5.47660 5.61048 5.61308 5.69770 5.70477 5.79509 5.94098 6.01610 6.24091 6.25759 6.33856 6.42812 6.57126 6.62090 7.50583 8.01147 8.55287 9.12787 9.49672 10.00611 10.70532 Molecular weight = 372.07amu Principal moments of inertia in cm(-1) A = 0.008991 B = 0.002995 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.433549 B = 9347.032381 C =11258.868296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.560 5.560 10 C 0.443 3.557 11 O -0.596 6.596 12 C -0.095 4.095 13 C -0.109 4.109 14 C 0.119 3.881 15 N -0.992 5.992 16 S 2.694 3.306 17 O -0.954 6.954 18 O -0.955 6.955 19 C -0.676 4.676 20 C -0.005 4.005 21 C -0.131 4.131 22 C 0.017 3.983 23 Cl -0.058 7.058 24 C -0.131 4.131 25 C -0.005 4.005 26 C 0.122 3.878 27 C -0.127 4.127 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 -17.303 8.232 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.195 5.195 10 C 0.229 3.771 11 O -0.482 6.482 12 C -0.117 4.117 13 C -0.148 4.148 14 C -0.005 4.005 15 N -0.831 5.831 16 S 2.784 3.216 17 O -0.945 6.945 18 O -0.945 6.945 19 C -0.761 4.761 20 C -0.025 4.025 21 C -0.151 4.151 22 C -0.010 4.010 23 Cl -0.029 7.029 24 C -0.151 4.151 25 C -0.025 4.025 26 C -0.003 4.003 27 C -0.166 4.166 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.404 -17.846 8.282 19.679 hybrid contribution 0.508 1.575 0.606 1.762 sum 0.912 -16.271 8.888 18.563 Atomic orbital electron populations 1.69610 1.05915 1.28114 1.50456 1.25250 0.95619 0.99706 0.97231 0.85826 0.79728 0.81202 0.77755 1.19255 1.20709 1.20741 1.19761 0.93393 0.82341 1.47592 0.87951 1.41911 1.09215 1.04661 1.63736 1.19855 0.88132 0.84841 0.84242 1.90516 1.14018 1.87334 1.56302 1.21084 0.97270 0.94533 0.98830 1.21650 0.97232 0.91888 1.04052 1.21611 0.91015 0.99038 0.88867 1.57683 1.46283 1.38808 1.40365 1.02007 0.73678 0.73075 0.72883 1.93581 1.36229 1.86104 1.78549 1.93577 1.79632 1.48452 1.72850 1.31258 1.11842 1.14733 1.18308 1.20899 0.90725 0.92998 0.97833 1.21211 1.01193 0.99793 0.92866 1.21310 0.91522 0.97514 0.90617 1.98406 1.63225 1.92231 1.49015 1.21218 0.91511 1.01679 1.00666 1.20905 1.00134 0.90974 0.90469 1.21558 0.90474 0.85017 1.03259 1.21949 0.99029 0.97114 0.98544 0.91874 0.77392 0.89738 0.91041 0.89976 0.89252 0.90447 0.83296 0.83859 0.83841 0.83279 0.90201 0.89119 0.91164 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.71 13.05 55.50 0.72 -22.99 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.58 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -13.51 5.17 -10.96 -0.06 -13.56 16 10 C 0.44 9.83 7.11 -10.99 -0.08 9.75 16 11 O -0.60 -15.46 15.56 5.54 0.09 -15.37 16 12 C -0.10 -1.50 2.49 -91.73 -0.23 -1.72 16 13 C -0.11 -1.51 4.65 -26.62 -0.12 -1.63 16 14 C 0.12 1.28 6.37 -3.71 -0.02 1.26 16 15 N -0.99 -10.79 3.29 -113.53 -0.37 -11.17 16 16 S 2.69 30.65 5.69 -107.50 -0.61 30.04 16 17 O -0.95 -12.57 15.99 -57.17 -0.91 -13.48 16 18 O -0.95 -12.51 15.99 -57.17 -0.91 -13.42 16 19 C -0.68 -7.22 5.97 -39.58 -0.24 -7.46 16 20 C -0.01 -0.05 9.52 -39.59 -0.38 -0.43 16 21 C -0.13 -1.27 9.83 -39.55 -0.39 -1.66 16 22 C 0.02 0.18 6.32 -39.49 -0.25 -0.07 16 23 Cl -0.06 -0.55 28.96 -51.86 -1.50 -2.05 16 24 C -0.13 -1.28 9.83 -39.55 -0.39 -1.67 16 25 C -0.01 -0.05 9.52 -39.59 -0.38 -0.43 16 26 C 0.12 1.30 6.37 -3.71 -0.02 1.28 16 27 C -0.13 -1.70 5.27 -26.61 -0.14 -1.84 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.39 9.00 7.29 -40.82 -0.30 8.70 16 30 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 31 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 32 H 0.08 1.18 8.07 -51.93 -0.42 0.77 16 33 H 0.09 0.84 7.13 -51.93 -0.37 0.47 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.15 1.24 7.61 -52.49 -0.40 0.84 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.15 1.26 7.62 -52.49 -0.40 0.86 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.86 7.12 -51.93 -0.37 0.49 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.15 7.52 -51.93 -0.39 0.76 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -33.50 377.66 -10.89 -44.39 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.12 Total: 8.78 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.88 Total: -12.40 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.29 Total: -47.72 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -1.74 Total: -42.28 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 30.65 SS G_CDS: -0.61 Total: 30.04 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.50 -10.89 -44.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225525524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.447 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds