Wall clock time and date at job start Tue Mar 31 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46894 * 111.00018 * 2 1 4 4 C 1.50700 * 109.47489 * 66.04579 * 3 2 1 5 5 O 1.21285 * 119.99411 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00017 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99554 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.46668 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00081 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99586 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99553 * 180.02562 * 10 8 7 12 12 Si 1.86791 * 120.00258 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47261 * 89.99781 * 12 10 8 14 14 H 1.48495 * 109.47498 * 209.99548 * 12 10 8 15 15 H 1.48501 * 109.47486 * 329.99726 * 12 10 8 16 16 C 1.46903 * 110.99908 * 236.04237 * 2 1 3 17 17 H 1.09002 * 110.26870 * 178.25271 * 16 2 1 18 18 C 1.51376 * 110.30065 * 56.18222 * 16 2 1 19 19 C 1.38477 * 130.37701 * 78.14402 * 18 16 2 20 20 C 1.38226 * 120.23914 * 180.02562 * 19 18 16 21 21 Cl 1.73597 * 120.04391 * 179.97438 * 20 19 18 22 22 C 1.38351 * 119.91828 * 359.97438 * 20 19 18 23 23 C 1.38198 * 119.90655 * 359.97438 * 22 20 19 24 24 Cl 1.73595 * 119.89710 * 179.97438 * 23 22 20 25 25 C 1.38210 * 109.75342 * 258.16560 * 18 16 2 26 26 C 1.51367 * 109.76498 * 0.02562 * 25 18 16 27 27 C 1.54342 * 105.16988 * 342.80962 * 26 25 18 28 28 H 1.09005 * 110.82460 * 144.56971 * 27 26 25 29 29 O 1.42895 * 110.82454 * 268.12616 * 27 26 25 30 30 H 1.09003 * 109.47310 * 183.95758 * 1 2 3 31 31 H 1.08995 * 109.47196 * 303.95446 * 1 2 3 32 32 H 1.09002 * 109.47087 * 63.95903 * 1 2 3 33 33 H 1.08997 * 109.47013 * 186.04571 * 3 2 1 34 34 H 1.09008 * 109.46632 * 306.04340 * 3 2 1 35 35 H 0.96992 * 120.00436 * 359.97438 * 6 4 3 36 36 H 1.08997 * 109.47267 * 299.99594 * 7 6 4 37 37 H 1.09000 * 109.46933 * 59.99987 * 7 6 4 38 38 H 0.97001 * 119.99743 * 180.02562 * 11 10 8 39 39 H 1.08009 * 119.88043 * 0.02685 * 19 18 16 40 40 H 1.07998 * 120.04669 * 180.02562 * 22 20 19 41 41 H 1.09000 * 110.30311 * 101.72920 * 26 25 18 42 42 H 1.09000 * 110.30799 * 223.88821 * 26 25 18 43 43 H 0.96704 * 113.99519 * 292.96188 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0055 1.4453 2.1410 6 7 2.0181 3.3202 1.5232 7 6 1.6690 3.9772 2.7853 8 6 2.2093 5.3841 2.7852 9 1 2.7573 5.7521 1.9305 10 6 2.0029 6.2018 3.8760 11 7 2.4739 7.4297 3.8758 12 14 1.0543 5.5655 5.3541 13 1 1.9973 4.9389 6.3151 14 1 0.3518 6.6946 6.0149 15 1 0.0598 4.5572 4.9075 16 6 1.9955 -0.7661 -1.1376 17 1 3.0849 -0.7325 -1.1436 18 6 1.4460 -0.2198 -2.4380 19 6 1.8092 0.9017 -3.1646 20 6 1.1561 1.2091 -4.3434 21 17 1.6151 2.6167 -5.2498 22 6 0.1360 0.3936 -4.8000 23 6 -0.2269 -0.7265 -4.0764 24 17 -1.5073 -1.7493 -4.6492 25 6 0.4267 -1.0346 -2.8933 26 6 0.2209 -2.1838 -1.9300 27 6 1.5043 -2.2277 -1.0737 28 1 1.2757 -2.5154 -0.0474 29 8 2.4682 -3.1125 -1.6481 30 1 -0.3634 -1.0252 0.0709 31 1 -0.3633 0.5740 0.8524 32 1 -0.3633 0.4512 -0.9234 33 1 3.0797 1.3443 -0.1082 34 1 1.5611 1.9272 -0.8310 35 1 2.5234 3.8013 0.8495 36 1 0.5848 4.0040 2.8932 37 1 2.1034 3.4216 3.6164 38 1 2.3290 8.0048 4.6434 39 1 2.6058 1.5386 -2.8089 40 1 -0.3754 0.6316 -5.7209 41 1 -0.6483 -1.9976 -1.2992 42 1 0.0991 -3.1187 -2.4769 43 1 2.2064 -4.0433 -1.6321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247956461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:00 Heat of formation + Delta-G solvation = -53.011967 kcal Electronic energy + Delta-G solvation = -29248.278873 eV Core-core repulsion = 24959.572505 eV Total energy + Delta-G solvation = -4288.706368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 372.079 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.48132 -39.14374 -38.14658 -37.13156 -36.60694 -36.16278 -34.31003 -33.48928 -32.38107 -31.42471 -29.37625 -28.47784 -28.06697 -26.98464 -23.89772 -23.20902 -22.05702 -21.63593 -20.49847 -19.87305 -18.03844 -17.44816 -17.22779 -16.62460 -16.22966 -16.03042 -15.58891 -15.46728 -15.21638 -14.76558 -14.56370 -14.41690 -14.11378 -13.97000 -13.81787 -13.46202 -13.20643 -12.80887 -12.72733 -12.57239 -12.48136 -12.36746 -12.25546 -11.88115 -11.61979 -11.50956 -11.43370 -11.36273 -11.15625 -11.06474 -11.00973 -10.75021 -10.49666 -9.99124 -9.51822 -9.29696 -9.25871 -8.95198 -8.79541 -8.52099 -8.15965 -6.23042 -4.25455 0.54051 0.59017 1.42841 1.87852 2.89626 3.17135 3.21631 3.26070 3.32820 3.40222 3.71364 3.93802 4.01222 4.28914 4.32141 4.38550 4.53163 4.55432 4.79466 4.89889 4.96797 5.06563 5.11970 5.17012 5.23350 5.29286 5.34198 5.36195 5.42944 5.50374 5.54069 5.58812 5.64347 5.87365 6.05570 6.10900 6.66027 6.78618 6.83931 7.04994 7.19974 7.25137 7.37012 8.11441 8.48652 8.73527 8.90623 9.36948 10.88919 Molecular weight = 372.08amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.002493 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.894082 B =11230.874667 C =12594.379239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.496 5.496 3 C 0.031 3.969 4 C 0.503 3.497 5 O -0.541 6.541 6 N -0.706 5.706 7 C 0.223 3.777 8 C -0.544 4.544 9 H 0.079 0.921 10 C 0.078 3.922 11 N -0.892 5.892 12 Si 0.877 3.123 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.261 1.261 16 C 0.130 3.870 17 H 0.110 0.890 18 C -0.100 4.100 19 C -0.084 4.084 20 C -0.025 4.025 21 Cl -0.052 7.052 22 C -0.099 4.099 23 C -0.014 4.014 24 Cl -0.061 7.061 25 C -0.066 4.066 26 C -0.121 4.121 27 C 0.114 3.886 28 H 0.093 0.907 29 O -0.555 6.555 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.025 0.975 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.024 0.976 37 H 0.021 0.979 38 H 0.268 0.732 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 -20.903 -19.568 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.218 5.218 3 C -0.100 4.100 4 C 0.287 3.713 5 O -0.419 6.419 6 N -0.355 5.355 7 C 0.100 3.900 8 C -0.582 4.582 9 H 0.097 0.903 10 C -0.126 4.126 11 N -0.529 5.529 12 Si 0.704 3.296 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.185 1.185 16 C 0.021 3.979 17 H 0.128 0.872 18 C -0.103 4.103 19 C -0.104 4.104 20 C -0.052 4.052 21 Cl -0.023 7.023 22 C -0.119 4.119 23 C -0.041 4.041 24 Cl -0.032 7.032 25 C -0.068 4.068 26 C -0.158 4.158 27 C 0.054 3.946 28 H 0.111 0.889 29 O -0.361 6.361 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.043 0.957 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.229 0.771 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.037 -20.774 -18.583 28.164 hybrid contribution -0.889 0.196 -0.549 1.063 sum -4.926 -20.578 -19.132 28.526 Atomic orbital electron populations 1.22840 0.86372 1.02893 1.02008 1.61933 1.09255 1.12779 1.37835 1.22092 1.01974 0.89154 0.96764 1.20212 0.80491 0.82302 0.88292 1.90624 1.40325 1.64362 1.46561 1.46161 1.55740 1.12340 1.21279 1.19478 0.96133 0.92845 0.81502 1.21090 1.37168 0.95090 1.04838 0.90256 1.24799 0.94952 0.94566 0.98316 1.69882 1.45076 1.06929 1.31050 0.86812 0.80970 0.78957 0.82907 1.19819 1.20933 1.18527 1.21168 1.01207 0.91608 0.83919 0.87182 1.21184 0.96855 0.94585 0.97635 1.20673 1.00003 0.96914 0.92787 1.20558 0.98249 0.91598 0.94815 1.98405 1.91602 1.38609 1.73670 1.20799 0.97161 0.93091 1.00832 1.20271 0.94140 0.94412 0.95299 1.98380 1.49082 1.67085 1.88618 1.20347 0.95318 0.97612 0.93488 1.22102 1.00224 0.96784 0.96666 1.22257 0.86526 0.89476 0.96292 0.88882 1.86472 1.45147 1.20607 1.83862 0.91078 0.88573 0.95660 0.87823 0.91756 0.77069 0.95785 0.96096 0.92250 0.84175 0.83653 0.87969 0.89308 0.76863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 7.79 60.07 0.47 0.54 16 2 N -0.50 -6.05 4.49 -236.48 -1.06 -7.11 16 3 C 0.03 0.40 4.91 -4.98 -0.02 0.38 16 4 C 0.50 9.03 7.52 -10.99 -0.08 8.94 16 5 O -0.54 -11.56 14.33 5.55 0.08 -11.48 16 6 N -0.71 -13.72 5.55 -61.47 -0.34 -14.06 16 7 C 0.22 5.35 4.50 -5.19 -0.02 5.33 16 8 C -0.54 -14.70 9.83 -34.44 -0.34 -15.04 16 9 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 10 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 11 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 12 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 16 C 0.13 1.30 2.87 -67.83 -0.19 1.11 16 17 H 0.11 1.12 8.02 -51.93 -0.42 0.70 16 18 C -0.10 -0.99 4.07 -104.21 -0.42 -1.41 16 19 C -0.08 -0.82 8.52 -39.50 -0.34 -1.16 16 20 C -0.03 -0.24 6.32 -39.54 -0.25 -0.49 16 21 Cl -0.05 -0.49 28.96 -51.86 -1.50 -1.99 16 22 C -0.10 -0.90 9.61 -39.55 -0.38 -1.28 16 23 C -0.01 -0.13 6.32 -39.45 -0.25 -0.38 16 24 Cl -0.06 -0.51 28.71 -51.86 -1.49 -2.00 16 25 C -0.07 -0.62 5.24 -104.16 -0.55 -1.16 16 26 C -0.12 -0.91 5.42 -26.85 -0.15 -1.05 16 27 C 0.11 0.94 3.52 -25.33 -0.09 0.85 16 28 H 0.09 0.75 7.82 -51.93 -0.41 0.34 16 29 O -0.56 -4.40 13.40 -35.23 -0.47 -4.87 16 30 H 0.07 0.71 5.10 -51.93 -0.26 0.45 16 31 H 0.10 1.47 5.83 -51.93 -0.30 1.17 16 32 H 0.02 0.30 6.57 -51.93 -0.34 -0.04 16 33 H 0.10 1.12 8.01 -51.93 -0.42 0.71 16 34 H 0.06 0.75 6.59 -51.92 -0.34 0.41 16 35 H 0.40 6.73 8.32 -40.82 -0.34 6.39 16 36 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 37 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.14 1.21 7.83 -52.48 -0.41 0.80 16 40 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.10 0.73 6.04 -51.93 -0.31 0.42 16 42 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 43 H 0.38 1.32 9.12 45.56 0.42 1.74 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -32.72 375.84 -10.06 -42.77 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.33 Total: 4.77 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.71 Total: -2.76 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.63 Total: -46.70 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.39 Total: -16.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -2.99 Total: -3.98 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.72 -10.06 -42.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247956461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.238 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds