Wall clock time and date at job start Tue Mar 31 2020 06:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46894 * 111.00018 * 2 1 4 4 C 1.50700 * 109.47489 * 66.04579 * 3 2 1 5 5 O 1.21285 * 119.99411 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00017 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99554 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.46668 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00081 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99586 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99553 * 180.02562 * 10 8 7 12 12 Si 1.86791 * 120.00258 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47261 * 89.99781 * 12 10 8 14 14 H 1.48495 * 109.47498 * 209.99548 * 12 10 8 15 15 H 1.48501 * 109.47486 * 329.99726 * 12 10 8 16 16 C 1.46903 * 110.99908 * 236.04237 * 2 1 3 17 17 H 1.09002 * 110.26870 * 178.25271 * 16 2 1 18 18 C 1.51376 * 110.30065 * 56.18222 * 16 2 1 19 19 C 1.38477 * 130.37701 * 78.14402 * 18 16 2 20 20 C 1.38226 * 120.23914 * 180.02562 * 19 18 16 21 21 Cl 1.73597 * 120.04391 * 179.97438 * 20 19 18 22 22 C 1.38351 * 119.91828 * 359.97438 * 20 19 18 23 23 C 1.38198 * 119.90655 * 359.97438 * 22 20 19 24 24 Cl 1.73595 * 119.89710 * 179.97438 * 23 22 20 25 25 C 1.38210 * 109.75342 * 258.16560 * 18 16 2 26 26 C 1.51367 * 109.76498 * 0.02562 * 25 18 16 27 27 C 1.54342 * 105.16988 * 342.80962 * 26 25 18 28 28 H 1.09005 * 110.82460 * 144.56971 * 27 26 25 29 29 O 1.42895 * 110.82454 * 268.12616 * 27 26 25 30 30 H 1.09003 * 109.47310 * 183.95758 * 1 2 3 31 31 H 1.08995 * 109.47196 * 303.95446 * 1 2 3 32 32 H 1.09002 * 109.47087 * 63.95903 * 1 2 3 33 33 H 1.08997 * 109.47013 * 186.04571 * 3 2 1 34 34 H 1.09008 * 109.46632 * 306.04340 * 3 2 1 35 35 H 0.96992 * 120.00436 * 359.97438 * 6 4 3 36 36 H 1.08997 * 109.47267 * 299.99594 * 7 6 4 37 37 H 1.09000 * 109.46933 * 59.99987 * 7 6 4 38 38 H 0.97001 * 119.99743 * 180.02562 * 11 10 8 39 39 H 1.08009 * 119.88043 * 0.02685 * 19 18 16 40 40 H 1.07998 * 120.04669 * 180.02562 * 22 20 19 41 41 H 1.09000 * 110.30311 * 101.72920 * 26 25 18 42 42 H 1.09000 * 110.30799 * 223.88821 * 26 25 18 43 43 H 0.96704 * 113.99519 * 292.96188 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0055 1.4453 2.1410 6 7 2.0181 3.3202 1.5232 7 6 1.6690 3.9772 2.7853 8 6 2.2093 5.3841 2.7852 9 1 2.7573 5.7521 1.9305 10 6 2.0029 6.2018 3.8760 11 7 2.4739 7.4297 3.8758 12 14 1.0543 5.5655 5.3541 13 1 1.9973 4.9389 6.3151 14 1 0.3518 6.6946 6.0149 15 1 0.0598 4.5572 4.9075 16 6 1.9955 -0.7661 -1.1376 17 1 3.0849 -0.7325 -1.1436 18 6 1.4460 -0.2198 -2.4380 19 6 1.8092 0.9017 -3.1646 20 6 1.1561 1.2091 -4.3434 21 17 1.6151 2.6167 -5.2498 22 6 0.1360 0.3936 -4.8000 23 6 -0.2269 -0.7265 -4.0764 24 17 -1.5073 -1.7493 -4.6492 25 6 0.4267 -1.0346 -2.8933 26 6 0.2209 -2.1838 -1.9300 27 6 1.5043 -2.2277 -1.0737 28 1 1.2757 -2.5154 -0.0474 29 8 2.4682 -3.1125 -1.6481 30 1 -0.3634 -1.0252 0.0709 31 1 -0.3633 0.5740 0.8524 32 1 -0.3633 0.4512 -0.9234 33 1 3.0797 1.3443 -0.1082 34 1 1.5611 1.9272 -0.8310 35 1 2.5234 3.8013 0.8495 36 1 0.5848 4.0040 2.8932 37 1 2.1034 3.4216 3.6164 38 1 2.3290 8.0048 4.6434 39 1 2.6058 1.5386 -2.8089 40 1 -0.3754 0.6316 -5.7209 41 1 -0.6483 -1.9976 -1.2992 42 1 0.0991 -3.1187 -2.4769 43 1 2.2064 -4.0433 -1.6321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247956461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:59 Heat of formation + Delta-G solvation = -77.601678 kcal Electronic energy + Delta-G solvation = -29249.345163 eV Core-core repulsion = 24959.572505 eV Total energy + Delta-G solvation = -4289.772658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 372.079 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.22649 -40.51814 -38.90393 -37.81906 -37.29251 -37.03120 -36.04787 -34.40386 -34.21411 -32.14682 -30.75868 -29.47756 -28.85972 -28.29319 -25.03207 -23.88510 -23.67304 -22.44934 -21.45044 -21.21651 -19.13889 -18.73177 -18.03923 -17.74112 -17.30348 -17.11240 -16.77382 -16.52397 -16.17509 -16.08584 -15.65294 -15.39919 -15.13740 -15.05145 -14.69543 -14.62448 -14.37811 -14.19653 -13.90934 -13.82435 -13.47396 -13.25154 -13.08818 -13.00914 -12.81849 -12.58039 -12.52639 -12.41348 -12.12929 -12.07700 -11.93010 -11.87881 -11.73426 -11.64481 -11.06985 -10.90996 -10.72505 -9.99706 -9.89463 -9.64616 -9.45734 -8.39197 -6.46007 -0.15707 -0.11707 0.73830 1.18649 1.33497 1.35744 1.47888 1.75267 2.07922 2.28578 2.31882 2.85718 2.96454 3.02660 3.30324 3.51835 3.72405 3.85054 3.90003 3.94246 4.13178 4.19586 4.25746 4.29417 4.31306 4.41928 4.54360 4.57976 4.68993 4.71334 4.80651 4.83793 4.88273 4.96423 5.05256 5.12663 5.18062 5.27893 5.37716 5.55421 5.74847 5.92180 6.10767 6.55457 6.87545 6.89840 7.17097 7.44571 8.75587 Molecular weight = 372.08amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.002493 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.894082 B =11230.874667 C =12594.379239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.506 5.506 3 C 0.043 3.957 4 C 0.502 3.498 5 O -0.574 6.574 6 N -0.708 5.708 7 C 0.235 3.765 8 C -0.546 4.546 9 H 0.059 0.941 10 C 0.025 3.975 11 N -0.932 5.932 12 Si 0.938 3.062 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.259 1.259 16 C 0.131 3.869 17 H 0.110 0.890 18 C -0.109 4.109 19 C -0.091 4.091 20 C -0.034 4.034 21 Cl -0.054 7.054 22 C -0.101 4.101 23 C -0.022 4.022 24 Cl -0.053 7.053 25 C -0.069 4.069 26 C -0.117 4.117 27 C 0.121 3.879 28 H 0.097 0.903 29 O -0.569 6.569 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.408 0.592 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.272 0.728 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 -22.894 -20.267 30.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.229 5.229 3 C -0.088 4.088 4 C 0.289 3.711 5 O -0.454 6.454 6 N -0.358 5.358 7 C 0.111 3.889 8 C -0.583 4.583 9 H 0.077 0.923 10 C -0.175 4.175 11 N -0.571 5.571 12 Si 0.761 3.239 13 H -0.190 1.190 14 H -0.200 1.200 15 H -0.184 1.184 16 C 0.022 3.978 17 H 0.128 0.872 18 C -0.112 4.112 19 C -0.110 4.110 20 C -0.061 4.061 21 Cl -0.025 7.025 22 C -0.120 4.120 23 C -0.049 4.049 24 Cl -0.024 7.024 25 C -0.071 4.071 26 C -0.154 4.154 27 C 0.062 3.938 28 H 0.114 0.886 29 O -0.377 6.377 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.243 0.757 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.081 0.919 39 H 0.166 0.834 40 H 0.175 0.825 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.440 -22.797 -19.320 30.211 hybrid contribution -0.737 0.770 -0.436 1.152 sum -5.177 -22.027 -19.756 30.038 Atomic orbital electron populations 1.22727 0.86539 1.03636 1.00482 1.61888 1.09199 1.12308 1.39468 1.22010 1.03573 0.89532 0.93686 1.21048 0.79073 0.81366 0.89612 1.90611 1.41605 1.64964 1.48260 1.46013 1.56428 1.13210 1.20186 1.19051 0.94942 0.91413 0.83478 1.21308 1.36458 0.96479 1.04104 0.92295 1.25608 0.95926 0.94723 1.01220 1.69987 1.46687 1.08203 1.32231 0.85853 0.79789 0.78583 0.79633 1.18993 1.19996 1.18371 1.21173 1.01087 0.92450 0.83072 0.87248 1.21190 0.97346 0.94913 0.97762 1.20827 1.00231 0.97092 0.92878 1.20627 0.98651 0.91786 0.95021 1.98403 1.91646 1.38731 1.73710 1.20982 0.96928 0.92904 1.01198 1.20357 0.94478 0.94646 0.95460 1.98382 1.48703 1.66817 1.88538 1.20577 0.94907 0.97974 0.93608 1.22124 0.99998 0.96870 0.96363 1.22138 0.86592 0.88494 0.96622 0.88577 1.86427 1.45376 1.22128 1.83798 0.88990 0.91917 0.95455 0.85331 0.90252 0.75692 0.97064 0.97062 0.91899 0.83423 0.82550 0.87441 0.87741 0.74615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 7.79 127.69 0.99 1.31 16 2 N -0.51 -11.48 4.49 -902.08 -4.05 -15.53 16 3 C 0.04 1.02 4.91 85.56 0.42 1.44 16 4 C 0.50 17.68 7.52 87.66 0.66 18.34 16 5 O -0.57 -24.46 14.33 -3.04 -0.04 -24.51 16 6 N -0.71 -27.26 5.55 -466.77 -2.59 -29.85 16 7 C 0.24 11.32 4.50 85.63 0.38 11.71 16 8 C -0.55 -29.82 9.83 25.60 0.25 -29.57 16 9 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 10 C 0.03 1.43 5.47 84.65 0.46 1.89 16 11 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 12 Si 0.94 43.85 27.47 68.60 1.88 45.74 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 15 H -0.26 -11.98 6.54 99.48 0.65 -11.33 16 16 C 0.13 2.34 2.87 44.83 0.13 2.46 16 17 H 0.11 1.98 8.02 -2.39 -0.02 1.97 16 18 C -0.11 -1.94 4.07 -19.60 -0.08 -2.02 16 19 C -0.09 -1.62 8.52 22.32 0.19 -1.43 16 20 C -0.03 -0.60 6.32 22.29 0.14 -0.46 16 21 Cl -0.05 -0.95 28.96 -2.72 -0.08 -1.03 16 22 C -0.10 -1.68 9.61 22.29 0.21 -1.47 16 23 C -0.02 -0.37 6.32 22.35 0.14 -0.23 16 24 Cl -0.05 -0.79 28.71 -2.72 -0.08 -0.87 16 25 C -0.07 -1.14 5.24 -19.57 -0.10 -1.24 16 26 C -0.12 -1.45 5.42 30.52 0.17 -1.28 16 27 C 0.12 1.69 3.52 31.50 0.11 1.80 16 28 H 0.10 1.30 7.82 -2.38 -0.02 1.28 16 29 O -0.57 -7.52 13.40 -148.98 -2.00 -9.52 16 30 H 0.09 1.67 5.10 -2.39 -0.01 1.66 16 31 H 0.06 1.90 5.83 -2.39 -0.01 1.89 16 32 H 0.03 0.61 6.57 -2.39 -0.02 0.59 16 33 H 0.13 2.47 8.01 -2.39 -0.02 2.45 16 34 H 0.08 1.71 6.59 -2.38 -0.02 1.69 16 35 H 0.41 13.67 8.32 -92.71 -0.77 12.90 16 36 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 37 H 0.01 0.57 7.57 -2.39 -0.02 0.56 16 38 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.15 2.29 7.83 -2.91 -0.02 2.27 16 40 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.11 1.24 6.04 -2.39 -0.01 1.23 16 42 H 0.10 0.98 8.11 -2.39 -0.02 0.96 16 43 H 0.40 1.65 9.12 -74.05 -0.68 0.97 16 Total: -1.00 -70.11 375.84 -2.97 -73.09 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -0.41 Total: 16.51 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.08 Total: 1.24 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -6.34 Total: -100.65 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -2.04 Total: -34.03 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.74 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.16 Total: -1.90 kcal Total: -70.11 -2.97 -73.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247956461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.514 kcal (2) G-P(sol) polarization free energy of solvation -70.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds