Wall clock time and date at job start Tue Mar 31 2020 05:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46846 * 110.99952 * 2 1 4 4 C 1.53030 * 109.52372 * 174.15670 * 3 2 1 5 5 C 1.53123 * 109.28062 * 59.17938 * 4 3 2 6 6 C 1.53117 * 109.14742 * 302.33866 * 5 4 3 7 7 H 1.08991 * 109.51492 * 297.72270 * 6 5 4 8 8 C 1.52995 * 109.49150 * 177.60215 * 6 5 4 9 9 N 1.46499 * 109.47237 * 65.20414 * 8 6 5 10 10 C 1.34780 * 120.00358 * 179.97438 * 9 8 6 11 11 O 1.21685 * 119.99910 * 0.02562 * 10 9 8 12 12 C 1.46376 * 119.99753 * 180.02562 * 10 9 8 13 13 H 1.07995 * 120.00397 * 353.93575 * 12 10 9 14 14 C 1.40049 * 119.99674 * 173.94167 * 12 10 9 15 15 N 1.30671 * 119.99835 * 6.15191 * 14 12 10 16 16 Si 1.86797 * 119.99872 * 186.14663 * 14 12 10 17 17 H 1.48511 * 109.47070 * 94.98698 * 16 14 12 18 18 H 1.48505 * 109.47024 * 214.98297 * 16 14 12 19 19 H 1.48495 * 109.47529 * 334.98373 * 16 14 12 20 20 C 1.46838 * 111.00104 * 235.78604 * 2 1 3 21 21 H 1.09004 * 109.46460 * 65.83947 * 20 2 1 22 22 C 1.50696 * 109.46712 * 305.85474 * 20 2 1 23 23 C 1.38231 * 120.00160 * 139.97698 * 22 20 2 24 24 C 1.38235 * 120.00235 * 180.02562 * 23 22 20 25 25 C 1.38237 * 119.99800 * 0.02562 * 24 23 22 26 26 C 1.50705 * 119.99871 * 179.97438 * 25 24 23 27 27 F 1.39902 * 109.46716 * 90.00317 * 26 25 24 28 28 F 1.39892 * 109.47232 * 209.99955 * 26 25 24 29 29 F 1.39895 * 109.47355 * 330.00412 * 26 25 24 30 30 C 1.38232 * 119.99878 * 0.25365 * 25 24 23 31 31 C 1.38235 * 120.00187 * 359.49746 * 30 25 24 32 32 H 1.08994 * 109.47308 * 184.21056 * 1 2 3 33 33 H 1.09000 * 109.47172 * 304.21499 * 1 2 3 34 34 H 1.09012 * 109.46715 * 64.21148 * 1 2 3 35 35 H 1.08996 * 109.46253 * 294.17447 * 3 2 1 36 36 H 1.09002 * 109.46426 * 54.14067 * 3 2 1 37 37 H 1.09005 * 109.50312 * 179.12158 * 4 3 2 38 38 H 1.09002 * 109.50598 * 299.23870 * 4 3 2 39 39 H 1.08996 * 109.52188 * 62.24715 * 5 4 3 40 40 H 1.09000 * 109.52143 * 182.37686 * 5 4 3 41 41 H 1.09001 * 109.47446 * 185.20515 * 8 6 5 42 42 H 1.08996 * 109.47591 * 305.20598 * 8 6 5 43 43 H 0.97008 * 119.99812 * 0.02562 * 9 8 6 44 44 H 0.97008 * 119.99786 * 180.02562 * 15 14 12 45 45 H 1.08002 * 119.99971 * 0.02562 * 23 22 20 46 46 H 1.08004 * 120.00252 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.99996 * 179.72223 * 30 25 24 48 48 H 1.07999 * 119.99803 * 180.23185 * 31 30 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1189 0.5370 -1.0142 6 6 3.5182 -0.8715 -1.0203 7 1 3.7812 -1.3834 -0.0948 8 6 4.0683 -1.6559 -2.2131 9 7 5.5098 -1.8549 -2.0438 10 6 6.2120 -2.5256 -2.9785 11 8 5.6487 -2.9655 -3.9633 12 6 7.6522 -2.7249 -2.8089 13 1 8.1697 -2.2524 -1.9872 14 6 8.3591 -3.5282 -3.7124 15 7 7.7600 -4.0016 -4.7729 16 14 10.1582 -3.9228 -3.4016 17 1 10.2651 -5.2292 -2.7035 18 1 10.8805 -3.9935 -4.6973 19 1 10.7595 -2.8596 -2.5571 20 6 1.9953 -0.7708 -1.1336 21 1 1.7327 -0.2708 -2.0660 22 6 1.3983 -2.1544 -1.1205 23 6 1.0188 -2.7548 -2.3064 24 6 0.4707 -4.0238 -2.2943 25 6 0.3017 -4.6922 -1.0961 26 6 -0.2964 -6.0755 -1.0828 27 9 0.7238 -7.0256 -1.2000 28 9 -0.9835 -6.2749 0.1192 29 9 -1.1843 -6.2100 -2.1555 30 6 0.6759 -4.0895 0.0903 31 6 1.2287 -2.8226 0.0778 32 1 -0.3633 -1.0248 0.0754 33 1 -0.3633 0.5779 0.8498 34 1 -0.3633 0.4471 -0.9254 35 1 1.7325 1.8608 -0.9376 36 1 1.5634 1.9258 0.8329 37 1 3.9098 2.3513 0.1311 38 1 3.7813 0.8568 1.0907 39 1 3.8888 1.0354 -1.9559 40 1 5.2000 0.4724 -0.8908 41 1 3.5721 -2.6247 -2.2709 42 1 3.8840 -1.0980 -3.1312 43 1 5.9589 -1.5046 -1.2585 44 1 8.2496 -4.5584 -5.3985 45 1 1.1505 -2.2324 -3.2424 46 1 0.1739 -4.4927 -3.2208 47 1 0.5396 -4.6100 1.0268 48 1 1.5244 -2.3533 1.0044 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253369849.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:40 Heat of formation + Delta-G solvation = -167.804913 kcal Electronic energy + Delta-G solvation = -34582.770452 eV Core-core repulsion = 29607.930900 eV Total energy + Delta-G solvation = -4974.839552 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.22033 -47.75882 -47.65734 -40.56851 -38.54974 -37.18791 -34.63463 -33.52370 -32.55764 -31.82003 -31.18068 -30.06388 -27.27146 -26.67425 -25.85081 -24.81433 -23.17873 -22.89371 -21.51768 -21.11217 -19.68109 -19.55664 -18.57010 -18.50056 -18.41071 -17.23960 -16.36467 -15.84845 -15.38195 -15.07291 -14.96153 -14.82145 -14.65498 -14.53890 -14.48838 -14.27368 -14.15109 -14.04248 -13.90790 -13.84144 -13.77720 -13.59645 -13.42897 -13.08622 -12.79597 -12.75602 -12.42333 -12.34063 -12.00417 -11.88535 -11.66036 -11.35751 -11.29853 -11.13244 -11.08826 -10.91641 -10.56716 -10.52420 -10.39736 -10.21366 -10.16383 -9.10883 -9.02085 -8.82790 -8.54604 -7.59288 -7.46536 -6.17743 -4.61538 0.81303 1.21505 2.60044 3.14943 3.22116 3.25302 3.35315 3.63033 3.66468 3.95789 4.12333 4.37090 4.41239 4.61311 4.69950 4.73576 4.77596 4.82451 4.88344 4.99490 5.17667 5.18061 5.25819 5.27344 5.33429 5.42180 5.46322 5.51190 5.60369 5.67090 5.71189 5.74746 5.84575 5.86251 5.87418 6.00354 6.07241 6.10177 6.22541 6.29611 6.35016 6.53702 6.59885 6.68134 6.87768 6.90604 7.45294 7.94945 8.12067 8.35194 9.04638 9.55914 10.61952 10.80845 Molecular weight = 370.16amu Principal moments of inertia in cm(-1) A = 0.006949 B = 0.003312 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4028.219460 B = 8453.168187 C =11682.523078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.534 5.534 3 C 0.057 3.943 4 C -0.118 4.118 5 C -0.115 4.115 6 C -0.084 4.084 7 H 0.084 0.916 8 C 0.138 3.862 9 N -0.765 5.765 10 C 0.555 3.445 11 O -0.581 6.581 12 C -0.547 4.547 13 H 0.067 0.933 14 C 0.089 3.911 15 N -0.768 5.768 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.265 1.265 20 C 0.130 3.870 21 H 0.055 0.945 22 C -0.041 4.041 23 C -0.109 4.109 24 C -0.068 4.068 25 C -0.187 4.187 26 C 0.508 3.492 27 F -0.175 7.175 28 F -0.180 7.180 29 F -0.179 7.179 30 C -0.076 4.076 31 C -0.096 4.096 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.379 0.621 44 H 0.267 0.733 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.133 0.867 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.996 6.511 11.598 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.258 5.258 3 C -0.070 4.070 4 C -0.155 4.155 5 C -0.153 4.153 6 C -0.104 4.104 7 H 0.102 0.898 8 C 0.013 3.987 9 N -0.421 5.421 10 C 0.359 3.641 11 O -0.464 6.464 12 C -0.584 4.584 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.397 5.397 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 C 0.021 3.979 21 H 0.073 0.927 22 C -0.042 4.042 23 C -0.127 4.127 24 C -0.086 4.086 25 C -0.188 4.188 26 C 0.454 3.546 27 F -0.156 7.156 28 F -0.162 7.162 29 F -0.161 7.161 30 C -0.094 4.094 31 C -0.115 4.115 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.211 0.789 44 H 0.078 0.922 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.151 0.849 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.280 5.824 11.110 21.353 hybrid contribution 0.710 0.010 -0.289 0.767 sum -16.570 5.834 10.820 20.632 Atomic orbital electron populations 1.22445 0.87266 1.02715 1.00377 1.61882 1.07518 1.13720 1.42722 1.22103 0.96008 0.88500 1.00421 1.21621 0.93947 1.00282 0.99690 1.21643 1.00877 0.94555 0.98222 1.21425 0.91708 0.96795 1.00432 0.89751 1.20894 0.84588 0.98170 0.95097 1.46099 1.06183 1.63244 1.26536 1.18200 0.87677 0.77009 0.81202 1.90593 1.71911 1.53197 1.30724 1.20881 0.91778 1.32466 1.13274 0.91483 1.25688 0.99377 0.94280 0.93764 1.70030 1.36532 1.24835 1.08268 0.86395 0.82848 0.79360 0.78354 1.19811 1.20489 1.18910 1.20568 0.94736 0.89985 0.92562 0.92674 1.19967 0.95237 0.95674 0.93319 1.21072 0.98285 0.95037 0.98351 1.20878 0.96407 0.94555 0.96731 1.19933 1.08595 0.93500 0.96786 1.18352 0.76059 0.86816 0.73347 1.93251 1.59496 1.67239 1.95622 1.93168 1.80586 1.95960 1.46462 1.93177 1.69803 1.96572 1.56524 1.20920 0.96446 0.95339 0.96715 1.21023 0.98234 0.93447 0.98746 0.90867 0.91366 0.95701 0.94848 0.90702 0.91480 0.90984 0.92057 0.90734 0.93047 0.93731 0.78934 0.92177 0.84795 0.84724 0.84913 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.09 60.07 0.55 0.72 16 2 N -0.53 -5.22 4.10 -236.33 -0.97 -6.19 16 3 C 0.06 0.51 5.46 -3.84 -0.02 0.49 16 4 C -0.12 -1.11 6.09 -26.65 -0.16 -1.27 16 5 C -0.12 -1.38 5.13 -26.61 -0.14 -1.51 16 6 C -0.08 -1.12 1.89 -90.54 -0.17 -1.30 16 7 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 8 C 0.14 2.54 4.82 -4.04 -0.02 2.52 16 9 N -0.76 -16.67 5.30 -61.72 -0.33 -16.99 16 10 C 0.56 15.71 7.74 -12.98 -0.10 15.61 16 11 O -0.58 -18.80 15.05 5.20 0.08 -18.72 16 12 C -0.55 -15.43 9.53 -35.63 -0.34 -15.77 16 13 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 14 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 15 N -0.77 -23.14 11.85 55.55 0.66 -22.48 16 16 Si 0.91 20.20 29.56 -169.99 -5.03 15.18 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 20 C 0.13 1.50 1.57 -68.88 -0.11 1.39 16 21 H 0.06 0.66 8.00 -51.93 -0.42 0.24 16 22 C -0.04 -0.49 2.90 -104.63 -0.30 -0.80 16 23 C -0.11 -1.36 8.57 -39.58 -0.34 -1.70 16 24 C -0.07 -0.84 9.40 -39.58 -0.37 -1.21 16 25 C -0.19 -2.30 5.45 -104.62 -0.57 -2.87 16 26 C 0.51 6.26 3.37 36.01 0.12 6.38 16 27 F -0.17 -2.43 17.30 2.25 0.04 -2.39 16 28 F -0.18 -2.11 16.45 2.25 0.04 -2.07 16 29 F -0.18 -2.20 16.46 2.25 0.04 -2.16 16 30 C -0.08 -0.86 9.40 -39.58 -0.37 -1.23 16 31 C -0.10 -1.08 7.90 -39.58 -0.31 -1.39 16 32 H 0.07 0.65 5.94 -51.93 -0.31 0.34 16 33 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.02 0.21 8.14 -51.92 -0.42 -0.21 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.95 7.27 -51.93 -0.38 0.57 16 41 H 0.05 1.04 6.34 -51.93 -0.33 0.71 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.38 7.26 7.66 -40.82 -0.31 6.95 16 44 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 45 H 0.13 1.57 8.04 -52.49 -0.42 1.15 16 46 H 0.13 1.51 7.60 -52.48 -0.40 1.12 16 47 H 0.13 1.26 7.60 -52.49 -0.40 0.86 16 48 H 0.14 1.45 7.72 -52.49 -0.40 1.05 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -33.91 396.73 -8.97 -42.88 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.71 Total: 6.52 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -2.76 Total: 0.45 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.64 Total: -45.66 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.08 Total: -18.72 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.11 Total: -6.62 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.91 -8.97 -42.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253369849.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.929 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds