Wall clock time and date at job start Tue Mar 31 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.54309 * 2 1 4 4 C 1.38238 * 120.00227 * 210.54581 * 3 2 1 5 5 C 1.38242 * 119.99878 * 179.78679 * 4 3 2 6 6 C 1.38233 * 120.00110 * 0.46385 * 5 4 3 7 7 C 1.38236 * 119.99956 * 359.76552 * 6 5 4 8 8 C 1.38234 * 119.99723 * 0.02562 * 7 6 5 9 9 C 1.53096 * 109.50841 * 120.10524 * 2 1 3 10 10 O 1.43022 * 109.25521 * 63.08880 * 9 2 1 11 11 C 1.43014 * 113.74169 * 58.67190 * 10 9 2 12 12 C 1.53099 * 109.25529 * 301.33354 * 11 10 9 13 13 N 1.47015 * 109.26330 * 56.84669 * 12 11 10 14 14 C 1.46894 * 110.99979 * 177.61151 * 13 12 11 15 15 C 1.50700 * 109.46904 * 293.21823 * 14 13 12 16 16 O 1.21285 * 119.99953 * 353.25457 * 15 14 13 17 17 N 1.34777 * 120.00063 * 173.25980 * 15 14 13 18 18 C 1.46506 * 119.99820 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.46793 * 90.00101 * 18 17 15 20 20 H 1.07997 * 120.00566 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99792 * 179.97438 * 19 18 17 22 22 N 1.31524 * 120.00019 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00364 * 180.27377 * 21 19 18 24 24 H 1.48490 * 109.47537 * 179.72330 * 23 21 19 25 25 H 1.48500 * 109.46944 * 299.72439 * 23 21 19 26 26 H 1.48505 * 109.47022 * 59.72051 * 23 21 19 27 27 C 1.46495 * 119.99933 * 359.97438 * 17 15 14 28 28 C 1.53002 * 109.46921 * 270.00057 * 27 17 15 29 29 C 1.47201 * 109.46962 * 180.02562 * 28 27 17 30 30 N 7.00303 * 56.88734 * 288.36336 * 2 1 3 31 31 H 1.09005 * 109.46995 * 174.97188 * 1 2 3 32 32 H 1.08995 * 109.47388 * 294.97179 * 1 2 3 33 33 H 1.08997 * 109.46727 * 54.97808 * 1 2 3 34 34 H 1.07995 * 119.99723 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.99862 * 180.25576 * 5 4 3 36 36 H 1.07998 * 119.99931 * 179.79185 * 6 5 4 37 37 H 1.08000 * 120.00162 * 179.97438 * 7 6 5 38 38 H 1.08003 * 119.99684 * 179.97438 * 8 7 6 39 39 H 1.09000 * 109.50954 * 303.15586 * 9 2 1 40 40 H 1.08999 * 109.51013 * 183.02151 * 9 2 1 41 41 H 1.08994 * 109.50675 * 181.39528 * 11 10 9 42 42 H 1.09000 * 109.53954 * 61.28005 * 11 10 9 43 43 H 1.09002 * 109.50742 * 296.90492 * 12 11 10 44 44 H 1.09005 * 109.54238 * 176.80275 * 12 11 10 45 45 H 1.09002 * 109.46995 * 173.22286 * 14 13 12 46 46 H 1.08990 * 109.47809 * 53.21649 * 14 13 12 47 47 H 1.08998 * 109.47574 * 329.99592 * 18 17 15 48 48 H 1.08998 * 109.46972 * 209.99544 * 18 17 15 49 49 H 0.97000 * 119.99828 * 179.97438 * 22 21 19 50 50 H 1.08993 * 109.47490 * 30.00038 * 27 17 15 51 51 H 1.09001 * 109.47245 * 150.00696 * 27 17 15 52 52 H 1.09003 * 109.47276 * 299.99838 * 28 27 17 53 53 H 1.09003 * 109.47128 * 60.00104 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 6 3.2369 1.7267 -0.6084 5 6 3.6972 3.0302 -0.6122 6 6 2.9593 4.0255 0.0007 7 6 1.7587 3.7182 0.6133 8 6 1.2965 2.4155 0.6133 9 6 2.0412 -0.7238 1.2484 10 8 1.6227 -2.0908 1.2057 11 6 2.0838 -2.7983 0.0515 12 6 1.5730 -2.0953 -1.2091 13 7 2.0210 -0.6951 -1.1988 14 6 1.5990 0.0016 -2.4212 15 6 2.3233 -0.5815 -3.6072 16 8 3.2008 -1.4016 -3.4386 17 7 1.9960 -0.1916 -4.8551 18 6 2.7005 -0.7580 -6.0080 19 6 1.9812 -1.9963 -6.4774 20 1 1.0888 -2.3283 -5.9678 21 6 2.4623 -2.7052 -7.5576 22 7 3.5489 -2.3006 -8.1786 23 14 1.5665 -4.2358 -8.1444 24 1 2.2772 -4.8065 -9.3167 25 1 1.5316 -5.2390 -7.0501 26 1 0.1784 -3.8785 -8.5329 27 6 0.9358 0.7987 -5.0587 28 6 -0.4088 0.0834 -5.2049 29 6 -1.4741 1.0784 -5.4101 30 7 -2.2957 1.8480 -5.5670 31 1 -0.3633 -1.0238 -0.0901 32 1 -0.3634 0.4338 0.9315 33 1 -0.3633 0.5898 -0.8416 34 1 3.8156 0.9483 -1.0834 35 1 4.6349 3.2704 -1.0912 36 1 3.3205 5.0433 0.0006 37 1 1.1824 4.4958 1.0925 38 1 0.3587 2.1753 1.0922 39 1 1.6331 -0.2459 2.1390 40 1 3.1299 -0.6772 1.2760 41 1 1.7064 -3.8205 0.0764 42 1 3.1736 -2.8126 0.0439 43 1 0.4837 -2.1289 -1.2285 44 1 1.9684 -2.5974 -2.0921 45 1 1.8368 1.0619 -2.3356 46 1 0.5243 -0.1200 -2.5562 47 1 3.7194 -1.0169 -5.7199 48 1 2.7260 -0.0250 -6.8142 49 1 3.8876 -2.7996 -8.9383 50 1 0.8980 1.4718 -4.2023 51 1 1.1425 1.3718 -5.9625 52 1 -0.3711 -0.5897 -6.0614 53 1 -0.6157 -0.4897 -4.3011 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328595956.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:54 Heat of formation + Delta-G solvation = -20.381575 kcal Electronic energy + Delta-G solvation = -35735.241140 eV Core-core repulsion = 31379.058267 eV Total energy + Delta-G solvation = -4356.182872 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 371.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.97164 -40.44372 -39.45376 -37.99517 -36.94945 -36.53654 -34.79018 -34.06251 -32.12421 -31.85673 -30.85469 -30.40023 -29.13974 -28.00669 -26.25379 -25.17867 -24.97643 -24.10465 -23.18856 -22.52384 -20.16161 -19.70756 -18.99955 -18.42465 -18.06682 -17.77721 -17.29578 -17.17015 -16.86265 -16.50133 -16.31370 -16.12742 -15.85835 -15.59135 -15.44462 -15.22646 -14.96675 -14.64486 -14.59622 -14.32055 -14.25790 -14.04673 -13.83870 -13.79013 -13.56852 -13.54927 -13.26887 -13.12561 -13.08383 -12.82100 -12.76746 -12.71465 -12.48294 -12.36444 -12.21743 -12.15155 -11.92035 -11.79686 -11.71377 -11.57400 -11.35690 -10.78179 -10.53480 -10.40778 -9.72879 -9.56088 -9.44993 -9.23666 -8.12894 -6.24790 0.46884 0.57690 1.44268 1.46893 1.52749 1.65176 1.80829 1.95047 2.16214 2.46088 2.75733 2.90265 2.93956 3.14108 3.19241 3.66172 3.73863 3.87670 3.93601 3.99321 4.10575 4.13486 4.18527 4.22064 4.25330 4.29711 4.34020 4.39813 4.47701 4.53815 4.64297 4.66547 4.71102 4.79772 4.81559 4.82145 4.85187 4.96429 5.00685 5.06795 5.13630 5.15585 5.25032 5.28621 5.36991 5.62057 5.66267 5.69672 5.71901 5.86804 5.94182 6.07451 6.14261 6.16095 6.23136 6.57357 6.78141 6.86370 7.39907 7.57665 8.94253 Molecular weight = 371.20amu Principal moments of inertia in cm(-1) A = 0.008999 B = 0.003285 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.695153 B = 8521.286589 C = 9495.126525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.120 3.880 3 C -0.083 4.083 4 C -0.111 4.111 5 C -0.134 4.134 6 C -0.122 4.122 7 C -0.123 4.123 8 C -0.112 4.112 9 C 0.080 3.920 10 O -0.387 6.387 11 C 0.069 3.931 12 C 0.018 3.982 13 N -0.517 5.517 14 C 0.046 3.954 15 C 0.506 3.494 16 O -0.564 6.564 17 N -0.600 5.600 18 C 0.262 3.738 19 C -0.528 4.528 20 H 0.068 0.932 21 C 0.011 3.989 22 N -0.930 5.930 23 Si 0.954 3.046 24 H -0.290 1.290 25 H -0.277 1.277 26 H -0.260 1.260 27 C 0.119 3.881 28 C -0.042 4.042 29 C 0.245 3.755 30 N -0.484 5.484 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.048 0.952 41 H 0.113 0.887 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.115 0.885 46 H 0.081 0.919 47 H -0.001 1.001 48 H 0.025 0.975 49 H 0.263 0.737 50 H 0.102 0.898 51 H 0.089 0.911 52 H 0.118 0.882 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 9.816 20.080 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.031 3.969 3 C -0.084 4.084 4 C -0.129 4.129 5 C -0.152 4.152 6 C -0.140 4.140 7 C -0.141 4.141 8 C -0.131 4.131 9 C 0.003 3.997 10 O -0.306 6.306 11 C -0.008 4.008 12 C -0.110 4.110 13 N -0.242 5.242 14 C -0.085 4.085 15 C 0.295 3.705 16 O -0.442 6.442 17 N -0.332 5.332 18 C 0.141 3.859 19 C -0.567 4.567 20 H 0.086 0.914 21 C -0.188 4.188 22 N -0.571 5.571 23 Si 0.780 3.220 24 H -0.216 1.216 25 H -0.202 1.202 26 H -0.184 1.184 27 C -0.006 4.006 28 C -0.083 4.083 29 C -0.072 4.072 30 N -0.163 5.163 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.142 0.858 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.136 0.864 40 H 0.066 0.934 41 H 0.131 0.869 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.132 0.868 46 H 0.099 0.901 47 H 0.017 0.983 48 H 0.043 0.957 49 H 0.072 0.928 50 H 0.120 0.880 51 H 0.107 0.893 52 H 0.136 0.864 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.933 10.396 19.929 23.523 hybrid contribution -0.029 -1.274 -1.358 1.862 sum -6.962 9.123 18.571 21.831 Atomic orbital electron populations 1.22432 0.94121 1.02825 1.03760 1.20586 0.94404 0.90975 0.90979 1.19577 0.95301 0.93648 0.99837 1.21124 0.96099 0.96720 0.98949 1.21359 1.00607 0.93071 1.00188 1.21442 0.95263 0.99823 0.97474 1.21420 0.96390 0.96803 0.99508 1.21282 1.00155 0.92415 0.99205 1.22743 0.98970 0.81375 0.96595 1.87954 1.76012 1.23273 1.43347 1.22638 0.98780 0.96034 0.83319 1.22837 0.98859 0.89081 1.00182 1.61940 1.59848 1.01857 1.00553 1.22071 0.98452 1.00051 0.87920 1.20936 0.83524 0.81698 0.84385 1.90657 1.33439 1.34545 1.85595 1.48098 1.36381 1.42360 1.06313 1.18785 0.91578 0.93050 0.82459 1.21715 1.11402 1.10358 1.13207 0.91380 1.25733 0.95657 1.00493 0.96945 1.70048 1.23467 1.41318 1.22234 0.85662 0.79192 0.79725 0.77420 1.21609 1.20234 1.18419 1.21478 0.84462 0.90088 1.04527 1.19870 0.87703 0.93643 1.07058 1.29169 0.93406 0.93177 0.91475 1.81253 1.12272 1.11772 1.10965 0.91919 0.89663 0.91738 0.87238 0.85817 0.84426 0.83783 0.83983 0.86422 0.93365 0.86886 0.93324 0.92726 0.90705 0.86765 0.90112 0.98321 0.95739 0.92834 0.87951 0.89262 0.86427 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 6.77 71.98 0.49 -2.27 16 2 C 0.12 2.35 0.53 2.79 0.00 2.35 16 3 C -0.08 -1.57 3.81 -19.87 -0.08 -1.65 16 4 C -0.11 -2.47 7.69 22.27 0.17 -2.30 16 5 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 6 C -0.12 -1.90 10.05 22.27 0.22 -1.68 16 7 C -0.12 -1.70 10.05 22.27 0.22 -1.48 16 8 C -0.11 -1.66 9.15 22.27 0.20 -1.46 16 9 C 0.08 1.59 5.68 72.01 0.41 2.00 16 10 O -0.39 -8.82 10.37 -148.98 -1.54 -10.36 16 11 C 0.07 1.64 7.01 72.02 0.50 2.14 16 12 C 0.02 0.48 4.92 86.31 0.42 0.90 16 13 N -0.52 -13.11 3.28 -854.51 -2.81 -15.91 16 14 C 0.05 1.15 2.70 85.56 0.23 1.38 16 15 C 0.51 18.07 7.23 87.66 0.63 18.71 16 16 O -0.56 -25.92 14.32 -3.05 -0.04 -25.96 16 17 N -0.60 -21.28 2.46 -826.16 -2.03 -23.31 16 18 C 0.26 12.49 5.20 85.63 0.45 12.94 16 19 C -0.53 -26.70 8.92 25.60 0.23 -26.47 16 20 H 0.07 3.24 7.42 -2.91 -0.02 3.22 16 21 C 0.01 0.56 5.46 84.65 0.46 1.02 16 22 N -0.93 -53.45 13.29 21.45 0.28 -53.17 16 23 Si 0.95 41.96 29.54 68.60 2.03 43.98 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 27 C 0.12 2.97 5.12 86.38 0.44 3.41 16 28 C -0.04 -0.93 5.97 28.79 0.17 -0.76 16 29 C 0.24 5.89 15.44 89.44 1.38 7.27 16 30 N -0.48 -14.02 18.54 20.01 0.37 -13.65 16 31 H 0.06 1.12 5.95 -2.38 -0.01 1.10 16 32 H 0.08 1.03 6.81 -2.39 -0.02 1.01 16 33 H 0.06 0.98 6.98 -2.39 -0.02 0.96 16 34 H 0.11 3.04 7.26 -2.91 -0.02 3.02 16 35 H 0.12 2.23 8.06 -2.91 -0.02 2.20 16 36 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.14 1.51 6.32 -2.91 -0.02 1.49 16 39 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.27 6.28 -2.39 -0.01 1.26 16 44 H 0.07 2.51 6.16 -2.38 -0.01 2.49 16 45 H 0.11 2.67 5.22 -2.39 -0.01 2.65 16 46 H 0.08 1.67 5.72 -2.39 -0.01 1.65 16 47 H 0.00 -0.08 7.42 -2.39 -0.02 -0.09 16 48 H 0.02 1.20 7.89 -2.39 -0.02 1.18 16 49 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 50 H 0.10 1.93 6.63 -2.39 -0.02 1.92 16 51 H 0.09 2.23 7.89 -2.39 -0.02 2.21 16 52 H 0.12 3.09 7.26 -2.39 -0.02 3.07 16 53 H 0.12 2.27 7.12 -2.39 -0.02 2.25 16 Total: -1.00 -69.73 418.24 3.98 -65.75 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.93 Total: 20.94 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.79 Total: 11.69 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -4.18 Total: -106.03 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.59 Total: -36.33 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -69.73 3.98 -65.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328595956.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.366 kcal (2) G-P(sol) polarization free energy of solvation -69.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds