Wall clock time and date at job start Tue Mar 31 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29901 * 126.20118 * 2 1 4 4 N 1.39468 * 111.30928 * 180.17315 * 3 2 1 5 5 C 1.40051 * 124.96958 * 179.78860 * 4 3 2 6 6 C 1.38877 * 120.06956 * 359.70370 * 5 4 3 7 7 C 1.38109 * 119.93007 * 179.97438 * 6 5 4 8 8 C 1.38292 * 120.06711 * 359.97438 * 7 6 5 9 9 C 1.38277 * 120.14224 * 359.97438 * 8 7 6 10 10 C 1.38104 * 120.07387 * 0.02562 * 9 8 7 11 11 C 1.34848 * 110.06113 * 359.53274 * 4 3 2 12 12 O 1.21953 * 126.96893 * 180.28256 * 11 4 3 13 13 C 1.46833 * 126.20331 * 179.67433 * 2 1 3 14 14 C 1.39143 * 127.50970 * 359.97438 * 13 2 1 15 15 C 1.40871 * 119.99956 * 350.56451 * 14 13 2 16 16 C 1.38446 * 126.89198 * 316.72651 * 15 14 13 17 17 N 1.35458 * 109.41845 * 180.02562 * 16 15 14 18 18 C 1.36830 * 124.70645 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99549 * 152.21174 * 18 17 16 20 20 C 1.39137 * 120.00135 * 332.21889 * 18 17 16 21 21 N 1.31229 * 119.99906 * 1.52055 * 20 18 17 22 22 Si 1.86806 * 119.99842 * 181.52910 * 20 18 17 23 23 H 1.48502 * 109.47321 * 89.99608 * 22 20 18 24 24 H 1.48498 * 109.46822 * 209.99758 * 22 20 18 25 25 H 1.48503 * 109.46967 * 329.99275 * 22 20 18 26 26 C 1.38513 * 110.58626 * 359.97438 * 17 16 15 27 27 C 1.39008 * 132.88318 * 180.02562 * 26 17 16 28 28 C 1.37942 * 119.96260 * 179.97438 * 27 26 17 29 29 C 1.38607 * 120.59207 * 0.02562 * 28 27 26 30 30 C 1.37974 * 120.23361 * 359.97438 * 29 28 27 31 31 C 1.39048 * 119.69742 * 359.69452 * 30 29 28 32 32 H 1.09001 * 109.46998 * 266.59742 * 1 2 3 33 33 H 1.09000 * 109.47192 * 26.60178 * 1 2 3 34 34 H 1.09003 * 109.46823 * 146.59863 * 1 2 3 35 35 H 1.07999 * 120.03701 * 359.69999 * 6 5 4 36 36 H 1.07996 * 119.96678 * 180.02562 * 7 6 5 37 37 H 1.08001 * 119.92266 * 180.02562 * 8 7 6 38 38 H 1.08006 * 119.96510 * 180.02562 * 9 8 7 39 39 H 1.08007 * 120.03853 * 179.97438 * 10 9 8 40 40 H 1.07995 * 120.00041 * 170.56134 * 14 13 2 41 41 H 1.07996 * 125.29261 * 359.97431 * 16 15 14 42 42 H 0.97004 * 119.99534 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.01993 * 359.96997 * 27 26 17 44 44 H 1.07997 * 119.70072 * 179.97438 * 28 27 26 45 45 H 1.07998 * 119.87816 * 179.97438 * 29 28 27 46 46 H 1.08003 * 120.15340 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2743 1.0482 0.0000 4 7 3.6221 0.6898 -0.0039 5 6 4.6928 1.5926 -0.0092 6 6 4.4499 2.9600 -0.0170 7 6 5.5079 3.8477 -0.0216 8 6 6.8080 3.3763 -0.0179 9 6 7.0531 2.0154 -0.0090 10 6 5.9995 1.1225 -0.0044 11 6 3.7436 -0.6532 0.0037 12 8 4.7801 -1.2958 0.0077 13 6 2.3743 -1.1848 0.0067 14 6 1.9841 -2.5204 0.0148 15 6 0.6315 -2.8578 0.2173 16 6 -0.2327 -2.3052 1.1472 17 7 -1.4489 -2.8911 1.0356 18 6 -2.5370 -2.5802 1.8048 19 1 -3.5334 -2.7207 1.4125 20 6 -2.3597 -2.0830 3.0922 21 7 -1.1490 -1.8841 3.5578 22 14 -3.8451 -1.6988 4.1578 23 1 -4.2169 -2.9039 4.9419 24 1 -3.5146 -0.5873 5.0853 25 1 -4.9847 -1.2998 3.2932 26 6 -1.4386 -3.8478 0.0340 27 6 -2.4114 -4.7073 -0.4633 28 6 -2.1047 -5.5732 -1.4924 29 6 -0.8311 -5.5966 -2.0387 30 6 0.1469 -4.7506 -1.5576 31 6 -0.1522 -3.8685 -0.5252 32 1 -0.3633 -0.0610 1.0259 33 1 -0.3633 0.9189 -0.4602 34 1 -0.3633 -0.8580 -0.5658 35 1 3.4349 3.3287 -0.0239 36 1 5.3198 4.9112 -0.0273 37 1 7.6336 4.0726 -0.0211 38 1 8.0696 1.6504 -0.0057 39 1 6.1916 0.0597 0.0021 40 1 2.7182 -3.2983 -0.1342 41 1 0.0232 -1.5284 1.8524 42 1 -1.0255 -1.5378 4.4554 43 1 -3.4067 -4.6972 -0.0441 44 1 -2.8637 -6.2394 -1.8752 45 1 -0.6035 -6.2795 -2.8438 46 1 1.1390 -4.7703 -1.9840 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408901871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:32 Heat of formation + Delta-G solvation = 132.481318 kcal Electronic energy + Delta-G solvation = -32234.160104 eV Core-core repulsion = 28056.081689 eV Total energy + Delta-G solvation = -4178.078415 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.137 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.09511 -40.64323 -38.58236 -36.84897 -36.65359 -34.77326 -33.43336 -32.30507 -30.76734 -30.28377 -30.17082 -29.14561 -27.97010 -27.16679 -25.95484 -24.03594 -22.58384 -22.09685 -21.98365 -21.00026 -20.19306 -19.46211 -18.59681 -18.12259 -17.25171 -16.12402 -16.06960 -15.67937 -15.43753 -15.17428 -14.84541 -14.76563 -14.65931 -14.13946 -13.97624 -13.75444 -13.51701 -13.37319 -13.22614 -13.02755 -12.81896 -12.75262 -12.50989 -12.23660 -12.01232 -11.81430 -11.76743 -11.71223 -11.42806 -11.33525 -11.08129 -11.01375 -10.88274 -10.75458 -10.53064 -10.43673 -9.93903 -9.62531 -9.21382 -9.03656 -8.82081 -8.43406 -7.68178 -7.54040 -7.26730 -6.83208 -4.88566 0.76831 1.39910 1.53278 1.74928 2.24629 2.72573 2.78674 2.79330 2.85475 2.93661 3.30050 3.46350 3.76875 4.09139 4.20433 4.30817 4.49775 4.55755 4.96877 5.06169 5.12111 5.28864 5.31011 5.44879 5.47183 5.50927 5.57437 5.65706 5.70501 5.81367 5.85487 5.96463 6.04541 6.06769 6.15571 6.23093 6.24158 6.40378 6.46692 6.50271 6.54964 6.62661 6.63789 6.66704 6.68797 6.73534 6.79727 6.97801 7.02758 7.08190 7.16289 7.29452 7.42107 7.53804 7.96208 8.15633 8.35270 8.43211 8.76322 9.77548 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.002819 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.249436 B = 9929.378532 C =11962.138355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.175 3.825 3 N -0.294 5.294 4 N -0.412 5.412 5 C 0.192 3.808 6 C -0.140 4.140 7 C -0.100 4.100 8 C -0.153 4.153 9 C -0.095 4.095 10 C -0.159 4.159 11 C 0.530 3.470 12 O -0.529 6.529 13 C -0.342 4.342 14 C 0.196 3.804 15 C -0.303 4.303 16 C 0.155 3.845 17 N -0.260 5.260 18 C -0.343 4.343 19 H 0.116 0.884 20 C 0.047 3.953 21 N -0.837 5.837 22 Si 0.947 3.053 23 H -0.268 1.268 24 H -0.272 1.272 25 H -0.260 1.260 26 C 0.045 3.955 27 C -0.093 4.093 28 C -0.139 4.139 29 C -0.139 4.139 30 C -0.100 4.100 31 C -0.057 4.057 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.153 0.847 40 H 0.124 0.876 41 H 0.194 0.806 42 H 0.291 0.709 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 2.743 -4.491 5.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.007 4.007 3 N -0.104 5.104 4 N -0.218 5.218 5 C 0.098 3.902 6 C -0.161 4.161 7 C -0.118 4.118 8 C -0.172 4.172 9 C -0.114 4.114 10 C -0.180 4.180 11 C 0.326 3.674 12 O -0.409 6.409 13 C -0.349 4.349 14 C 0.172 3.828 15 C -0.309 4.309 16 C 0.006 3.994 17 N 0.082 4.918 18 C -0.471 4.471 19 H 0.134 0.866 20 C -0.165 4.165 21 N -0.466 5.466 22 Si 0.770 3.230 23 H -0.193 1.193 24 H -0.197 1.197 25 H -0.184 1.184 26 C -0.058 4.058 27 C -0.112 4.112 28 C -0.159 4.159 29 C -0.158 4.158 30 C -0.119 4.119 31 C -0.061 4.061 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.170 0.830 40 H 0.142 0.858 41 H 0.210 0.790 42 H 0.102 0.898 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.057 3.597 -4.118 5.842 hybrid contribution -0.495 -0.639 0.752 1.104 sum 1.562 2.959 -3.366 4.746 Atomic orbital electron populations 1.20849 0.85536 1.03612 1.04597 1.23858 0.96373 0.89188 0.91314 1.76084 0.86367 1.24180 1.23781 1.46478 1.03495 1.05479 1.66307 1.17654 0.85206 0.88854 0.98487 1.20872 1.00332 0.90909 1.03957 1.20937 0.92250 0.99176 0.99486 1.21063 0.96705 0.95532 1.03936 1.20948 0.98418 0.92926 0.99105 1.21545 0.90203 1.02677 1.03612 1.18861 0.90037 0.81586 0.76868 1.90724 1.33840 1.63983 1.52311 1.21167 0.92381 0.94132 1.27266 1.20778 0.93339 0.92483 0.76202 1.17954 0.94704 1.09117 1.09119 1.23364 0.83461 0.94880 0.97661 1.40083 1.08998 1.21327 1.21398 1.20091 0.86897 1.44303 0.95771 0.86594 1.25690 0.99134 0.94721 0.96981 1.69656 1.21388 1.36393 1.19191 0.85575 0.79279 0.78981 0.79161 1.19278 1.19662 1.18421 1.18570 0.95870 0.95785 0.95617 1.20079 0.97821 0.95839 0.97483 1.20586 0.96847 1.00403 0.98017 1.20750 0.93508 1.00470 1.01039 1.20303 0.98861 0.95892 0.96800 1.18869 0.92950 0.96632 0.97639 0.88461 0.91135 0.88699 0.84924 0.85887 0.86300 0.85801 0.82993 0.85793 0.78996 0.89751 0.86664 0.86729 0.86904 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 8.16 36.01 0.29 -1.17 16 2 C 0.18 3.30 7.27 -79.93 -0.58 2.72 16 3 N -0.29 -5.75 11.49 34.99 0.40 -5.34 16 4 N -0.41 -8.30 3.74 -10.87 -0.04 -8.34 16 5 C 0.19 3.51 6.67 -83.63 -0.56 2.96 16 6 C -0.14 -2.22 9.63 -39.39 -0.38 -2.60 16 7 C -0.10 -1.29 10.04 -39.61 -0.40 -1.69 16 8 C -0.15 -1.88 10.04 -39.55 -0.40 -2.28 16 9 C -0.10 -1.29 10.04 -39.62 -0.40 -1.69 16 10 C -0.16 -2.71 9.36 -39.39 -0.37 -3.08 16 11 C 0.53 11.18 8.04 -12.73 -0.10 11.08 16 12 O -0.53 -11.69 15.16 4.96 0.08 -11.62 16 13 C -0.34 -6.70 6.18 -102.59 -0.63 -7.34 16 14 C 0.20 3.61 10.04 -38.25 -0.38 3.23 16 15 C -0.30 -5.82 4.59 -104.88 -0.48 -6.30 16 16 C 0.16 3.16 5.92 -15.87 -0.09 3.07 16 17 N -0.26 -5.42 2.87 -59.06 -0.17 -5.59 16 18 C -0.34 -7.14 9.84 -14.99 -0.15 -7.29 16 19 H 0.12 2.27 7.83 -52.48 -0.41 1.85 16 20 C 0.05 0.95 5.44 -17.48 -0.10 0.86 16 21 N -0.84 -18.10 10.72 55.50 0.60 -17.51 16 22 Si 0.95 15.95 29.55 -169.99 -5.02 10.93 16 23 H -0.27 -4.59 7.11 56.52 0.40 -4.18 16 24 H -0.27 -4.62 7.11 56.52 0.40 -4.22 16 25 H -0.26 -4.26 7.11 56.52 0.40 -3.86 16 26 C 0.05 0.89 6.72 -83.79 -0.56 0.32 16 27 C -0.09 -1.59 9.91 -39.40 -0.39 -1.98 16 28 C -0.14 -2.08 10.02 -39.55 -0.40 -2.48 16 29 C -0.14 -2.05 10.04 -39.54 -0.40 -2.45 16 30 C -0.10 -1.64 10.09 -39.38 -0.40 -2.04 16 31 C -0.06 -1.08 6.33 -104.88 -0.66 -1.75 16 32 H 0.10 1.70 5.98 -51.93 -0.31 1.39 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.65 5.93 -51.93 -0.31 1.34 16 35 H 0.13 2.07 7.64 -52.49 -0.40 1.67 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 39 H 0.15 2.81 5.37 -52.48 -0.28 2.53 16 40 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.19 4.09 4.67 -52.49 -0.24 3.85 16 42 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 43 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 44 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 46 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -25.61 387.56 -10.75 -36.37 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -4.90 Total: 15.17 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -7.53 Total: -19.90 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.79 Total: -36.79 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 15.95 SS G_CDS: -5.02 Total: 10.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -25.61 -10.75 -36.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408901871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.847 kcal (2) G-P(sol) polarization free energy of solvation -25.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds