Wall clock time and date at job start Tue Mar 31 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46516 * 2 1 4 4 C 1.35902 * 116.99977 * 180.02562 * 3 2 1 5 5 C 1.38193 * 120.01359 * 0.25885 * 4 3 2 6 6 C 1.39765 * 119.85476 * 180.29589 * 5 4 3 7 7 C 1.47277 * 120.05641 * 179.69987 * 6 5 4 8 8 N 1.29948 * 119.99972 * 189.58020 * 7 6 5 9 9 N 1.40099 * 119.99974 * 25.05409 * 8 7 6 10 10 C 1.39491 * 120.00132 * 186.88199 * 9 8 7 11 11 C 1.39006 * 120.08580 * 180.02562 * 10 9 8 12 12 C 1.38071 * 119.91787 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.08299 * 359.97438 * 12 11 10 14 14 N 1.48033 * 119.91945 * 179.97438 * 13 12 11 15 15 O 1.31699 * 119.99407 * 359.97438 * 14 13 12 16 16 O 1.31695 * 120.00288 * 179.72318 * 14 13 12 17 17 C 1.38311 * 120.16809 * 0.25233 * 13 12 11 18 18 C 1.38076 * 120.08217 * 359.49259 * 17 13 12 19 19 C 1.39937 * 119.88900 * 359.41995 * 6 5 4 20 20 C 1.37677 * 120.02105 * 0.30599 * 19 6 5 21 21 C 1.39077 * 120.14513 * 359.97438 * 20 19 6 22 22 O 1.35583 * 119.94020 * 180.02562 * 21 20 19 23 23 C 1.22298 * 117.00003 * 2.80111 * 22 21 20 24 24 H 1.07999 * 119.99887 * 4.22254 * 23 22 21 25 25 C 1.46488 * 119.99898 * 184.22099 * 23 22 21 26 26 N 1.29451 * 119.99902 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 120.00407 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.46972 * 89.99446 * 27 25 23 29 29 H 1.48500 * 109.47441 * 209.99863 * 27 25 23 30 30 H 1.48502 * 109.46703 * 330.00315 * 27 25 23 31 31 H 1.09003 * 109.46348 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46984 * 299.99639 * 1 2 3 33 33 H 1.08990 * 109.47551 * 60.00388 * 1 2 3 34 34 H 1.08997 * 109.46984 * 240.00361 * 2 1 3 35 35 H 1.08993 * 109.47291 * 120.00068 * 2 1 3 36 36 H 1.08007 * 120.06897 * 359.97438 * 5 4 3 37 37 H 1.07997 * 119.99807 * 9.57910 * 7 6 5 38 38 H 0.97001 * 120.00067 * 6.88328 * 9 8 7 39 39 H 1.08004 * 120.03739 * 359.97438 * 11 10 9 40 40 H 1.07991 * 119.95818 * 179.97438 * 12 11 10 41 41 H 1.08005 * 119.96135 * 179.74609 * 17 13 12 42 42 H 1.08001 * 120.04348 * 180.22848 * 18 17 13 43 43 H 1.07997 * 119.98624 * 180.27507 * 19 6 5 44 44 H 1.07995 * 119.92462 * 179.97438 * 20 19 6 45 45 H 0.96999 * 120.00138 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3535 1.5255 -0.0005 5 6 4.1957 0.4299 -0.0065 6 6 5.5808 0.6169 -0.0007 7 6 6.4824 -0.5476 -0.0003 8 7 7.7569 -0.3825 0.1922 9 7 8.2198 0.7370 0.8959 10 6 9.5888 0.9912 0.9797 11 6 10.0500 2.1012 1.6779 12 6 11.4058 2.3497 1.7581 13 6 12.3046 1.4957 1.1454 14 7 13.7574 1.7659 1.2332 15 8 14.1924 2.8189 1.8939 16 8 14.6151 0.9508 0.6550 17 6 11.8493 0.3928 0.4458 18 6 10.4953 0.1348 0.3656 19 6 6.1095 1.9126 -0.0013 20 6 5.2660 3.0007 -0.0012 21 6 3.8875 2.8159 -0.0009 22 8 3.0607 3.8905 -0.0013 23 6 3.5847 4.9942 -0.0551 24 1 4.6554 5.0787 -0.1682 25 6 2.7600 6.2016 0.0340 26 7 3.3147 7.3699 -0.0224 27 14 0.9082 6.0555 0.2303 28 1 0.5652 6.0150 1.6746 29 1 0.2494 7.2265 -0.4022 30 1 0.4378 4.8088 -0.4253 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.7844 -0.5688 -0.0103 37 1 6.0843 -1.5387 -0.1601 38 1 7.5883 1.3354 1.3249 39 1 9.3486 2.7687 2.1563 40 1 11.7648 3.2121 2.3001 41 1 12.5540 -0.2696 -0.0349 42 1 10.1406 -0.7286 -0.1778 43 1 7.1795 2.0590 -0.0014 44 1 5.6757 4.0000 -0.0012 45 1 2.7686 8.1694 0.0361 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408909741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:53 Heat of formation + Delta-G solvation = 107.285521 kcal Electronic energy + Delta-G solvation = -31725.244886 eV Core-core repulsion = 27102.931885 eV Total energy + Delta-G solvation = -4622.313001 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.136 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -40.93948 -40.30237 -39.07506 -38.56286 -37.66051 -35.73937 -34.27860 -33.46255 -33.16559 -31.65803 -31.45775 -30.33647 -29.18509 -28.80220 -26.01257 -25.71978 -23.76752 -23.54026 -22.92782 -21.75193 -21.35851 -20.46498 -18.88810 -18.68105 -18.46580 -18.15424 -17.63993 -17.16581 -15.89564 -15.84920 -15.78435 -15.64560 -15.03143 -14.92274 -14.88810 -14.75799 -14.45658 -14.19665 -13.90580 -13.76245 -13.60976 -13.19793 -12.88592 -12.77914 -12.70133 -12.53056 -12.31451 -12.03024 -11.67009 -11.61445 -11.40746 -11.30190 -11.19992 -11.00458 -10.96468 -10.72952 -10.61458 -10.59299 -10.32298 -9.85740 -9.71119 -9.56487 -9.50500 -8.31306 -7.91965 -7.30116 -7.20022 -4.08204 -0.57096 0.88287 0.92504 1.31463 1.38989 1.99387 2.34360 2.75662 2.83695 2.91978 2.98755 3.31351 3.61167 3.64896 4.04979 4.24515 4.28792 4.43637 4.56258 4.65784 4.71378 4.95091 5.01003 5.05622 5.09967 5.21724 5.28713 5.35899 5.38040 5.49199 5.54182 5.67357 5.71536 5.73915 5.84317 5.93078 5.96727 6.04467 6.12213 6.24241 6.30487 6.37283 6.63113 6.75968 6.88617 6.91427 6.93641 7.07899 7.18567 7.41154 7.87851 7.96924 8.13739 9.28542 9.70199 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.010280 B = 0.002098 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.039411 B =13343.472288 C =15861.487459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.311 6.311 4 C 0.058 3.942 5 C -0.131 4.131 6 C -0.232 4.232 7 C 0.165 3.835 8 N -0.316 5.316 9 N -0.557 5.557 10 C 0.288 3.712 11 C -0.200 4.200 12 C 0.002 3.998 13 C -0.075 4.075 14 N 0.004 4.996 15 O -0.203 6.203 16 O -0.204 6.204 17 C -0.009 4.009 18 C -0.172 4.172 19 C -0.076 4.076 20 C -0.233 4.233 21 C 0.088 3.912 22 O -0.098 6.098 23 C -0.376 4.376 24 H 0.108 0.892 25 C 0.065 3.935 26 N -0.792 5.792 27 Si 0.912 3.088 28 H -0.262 1.262 29 H -0.271 1.271 30 H -0.245 1.245 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.121 0.879 37 H 0.170 0.830 38 H 0.405 0.595 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.118 0.882 44 H 0.134 0.866 45 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -12.031 1.552 12.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.226 6.226 4 C 0.013 3.987 5 C -0.152 4.152 6 C -0.238 4.238 7 C -0.036 4.036 8 N -0.124 5.124 9 N -0.275 5.275 10 C 0.177 3.823 11 C -0.224 4.224 12 C -0.019 4.019 13 C -0.166 4.166 14 N 0.473 4.527 15 O -0.390 6.390 16 O -0.391 6.391 17 C -0.029 4.029 18 C -0.194 4.194 19 C -0.097 4.097 20 C -0.253 4.253 21 C 0.029 3.971 22 O 0.010 5.990 23 C -0.454 4.454 24 H 0.125 0.875 25 C -0.154 4.154 26 N -0.418 5.418 27 Si 0.734 3.266 28 H -0.186 1.186 29 H -0.196 1.196 30 H -0.167 1.167 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.187 0.813 38 H 0.252 0.748 39 H 0.165 0.835 40 H 0.171 0.829 41 H 0.169 0.831 42 H 0.173 0.827 43 H 0.135 0.865 44 H 0.151 0.849 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.839 -12.083 1.330 12.185 hybrid contribution -0.989 0.953 0.226 1.393 sum -1.829 -11.130 1.556 11.386 Atomic orbital electron populations 1.21751 0.93511 1.02134 1.03457 1.22608 0.95332 0.83283 1.00659 1.86111 1.19114 1.27470 1.89920 1.17779 0.82044 0.91021 1.07867 1.20580 0.92617 0.96127 1.05900 1.18417 0.92789 0.92024 1.20546 1.25012 0.88325 0.97914 0.92386 1.74885 1.15353 1.06665 1.15527 1.46579 1.03870 1.27870 1.49183 1.18074 0.83306 0.91338 0.89625 1.20625 0.95035 0.99604 1.07145 1.20711 0.91334 0.96828 0.93037 1.20080 0.76984 1.04215 1.15274 1.50366 1.04639 1.00332 0.97404 1.96247 1.85086 1.15871 1.41822 1.96239 1.51676 1.43067 1.48112 1.20856 0.96309 0.93267 0.92513 1.20746 0.90218 1.02623 1.05861 1.21202 0.98613 0.91741 0.98115 1.20414 0.91355 0.99317 1.14254 1.18467 0.88686 0.83916 1.05998 1.79930 1.37364 1.13471 1.68237 1.20696 0.96685 0.81424 1.46566 0.87538 1.26473 1.01529 0.92708 0.94664 1.68583 1.40315 0.99080 1.33843 0.86043 0.80111 0.80086 0.80348 1.18642 1.19614 1.16748 0.90922 0.91721 0.91689 0.92671 0.92724 0.86146 0.81290 0.74832 0.83504 0.82892 0.83123 0.82709 0.86495 0.84851 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.06 0.70 5.46 37.16 0.20 0.90 16 3 O -0.31 -5.53 9.92 -34.01 -0.34 -5.87 16 4 C 0.06 1.07 6.70 -39.07 -0.26 0.81 16 5 C -0.13 -1.99 8.77 -39.03 -0.34 -2.33 16 6 C -0.23 -3.46 5.71 -105.02 -0.60 -4.06 16 7 C 0.17 2.01 11.19 -14.68 -0.16 1.84 16 8 N -0.32 -4.02 10.36 32.14 0.33 -3.69 16 9 N -0.56 -6.88 4.51 32.41 0.15 -6.74 16 10 C 0.29 3.33 6.72 -83.80 -0.56 2.77 16 11 C -0.20 -2.09 9.90 -39.36 -0.39 -2.48 16 12 C 0.00 0.02 9.57 -39.62 -0.38 -0.36 16 13 C -0.07 -0.95 6.89 -79.89 -0.55 -1.50 16 14 N 0.00 0.06 4.99 33.99 0.17 0.22 16 15 O -0.20 -3.32 19.14 -31.57 -0.60 -3.92 16 16 O -0.20 -3.31 19.15 -31.56 -0.60 -3.91 16 17 C -0.01 -0.10 9.57 -39.61 -0.38 -0.48 16 18 C -0.17 -1.90 9.51 -39.36 -0.37 -2.28 16 19 C -0.08 -1.24 7.98 -39.15 -0.31 -1.55 16 20 C -0.23 -4.47 9.08 -39.48 -0.36 -4.83 16 21 C 0.09 1.84 6.62 -38.74 -0.26 1.59 16 22 O -0.10 -2.27 8.00 6.85 0.05 -2.22 16 23 C -0.38 -8.98 9.96 34.05 0.34 -8.64 16 24 H 0.11 2.60 5.14 -52.49 -0.27 2.33 16 25 C 0.07 1.51 5.69 -15.23 -0.09 1.42 16 26 N -0.79 -18.59 13.88 55.98 0.78 -17.81 16 27 Si 0.91 17.83 28.83 -169.99 -4.90 12.93 16 28 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 29 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 30 H -0.24 -4.94 7.11 56.52 0.40 -4.54 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.60 7.65 -51.93 -0.40 0.21 16 35 H 0.05 0.59 7.67 -51.93 -0.40 0.20 16 36 H 0.12 1.43 6.28 -52.48 -0.33 1.11 16 37 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.41 5.03 5.71 -182.60 -1.04 3.99 16 39 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.15 1.50 7.57 -52.49 -0.40 1.10 16 41 H 0.15 1.48 7.57 -52.48 -0.40 1.09 16 42 H 0.16 1.64 7.36 -52.49 -0.39 1.26 16 43 H 0.12 1.76 5.14 -52.49 -0.27 1.49 16 44 H 0.13 2.64 5.69 -52.49 -0.30 2.34 16 45 H 0.30 6.31 8.27 -40.82 -0.34 5.97 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -27.02 394.26 -8.55 -35.57 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.43 Total: 9.84 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -4.09 Total: -20.35 kcal Atomic # 7 Polarization: -29.44 SS G_CDS: 1.43 Total: -28.01 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -1.49 Total: -15.93 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -4.90 Total: 12.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -27.02 -8.55 -35.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408909741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.860 kcal (2) G-P(sol) polarization free energy of solvation -27.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.93 seconds