Wall clock time and date at job start Tue Mar 31 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.35761 * 119.04217 * 2 1 4 4 H 0.96996 * 119.52084 * 0.02562 * 3 2 1 5 5 C 1.37672 * 120.96567 * 179.97438 * 3 2 1 6 6 N 1.31259 * 120.42733 * 180.02562 * 5 3 2 7 7 C 1.46967 * 119.15050 * 0.02562 * 5 3 2 8 8 C 1.43202 * 120.86654 * 180.02562 * 7 5 3 9 9 N 4.85405 * 136.92461 * 359.96229 * 3 1 2 10 10 C 1.40205 * 118.26432 * 359.97438 * 7 5 3 11 11 C 1.47631 * 120.53315 * 180.02562 * 10 7 5 12 12 C 1.39779 * 120.07924 * 111.89275 * 11 10 7 13 13 C 1.37678 * 119.92280 * 180.25526 * 12 11 10 14 14 C 1.39126 * 120.07444 * 359.47028 * 13 12 11 15 15 O 1.35606 * 119.92110 * 180.25473 * 14 13 12 16 16 C 1.34790 * 117.00151 * 186.17529 * 15 14 13 17 17 H 1.07995 * 119.99877 * 5.15531 * 16 15 14 18 18 C 1.38705 * 120.00166 * 185.16408 * 16 15 14 19 19 N 1.31517 * 119.99742 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00278 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47039 * 59.99418 * 20 18 16 22 22 H 1.48499 * 109.47011 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46835 * 299.99658 * 20 18 16 24 24 C 1.39126 * 120.16289 * 0.50899 * 14 13 12 25 25 C 1.37686 * 120.07462 * 359.77057 * 24 14 13 26 26 C 1.35991 * 119.04039 * 180.31188 * 2 1 3 27 27 C 1.48276 * 119.61925 * 0.02562 * 26 2 1 28 28 C 1.39398 * 120.12381 * 110.17412 * 27 26 2 29 29 C 1.38009 * 119.86714 * 179.70037 * 28 27 26 30 30 C 1.38330 * 120.12334 * 0.57689 * 29 28 27 31 31 C 1.38331 * 120.26359 * 359.71979 * 30 29 28 32 32 C 1.38006 * 120.12379 * 359.97438 * 31 30 29 33 33 H 1.09008 * 109.47052 * 89.99825 * 1 2 3 34 34 H 1.09004 * 109.47300 * 209.99759 * 1 2 3 35 35 H 1.08998 * 109.47246 * 329.99901 * 1 2 3 36 36 H 0.97000 * 119.99605 * 0.02562 * 6 5 3 37 37 H 1.08004 * 120.04013 * 359.97438 * 12 11 10 38 38 H 1.07999 * 119.96336 * 179.71930 * 13 12 11 39 39 H 0.97003 * 120.00275 * 180.02562 * 19 18 16 40 40 H 1.07990 * 119.96368 * 179.74998 * 24 14 13 41 41 H 1.08000 * 120.03755 * 179.97438 * 25 24 14 42 42 H 1.07992 * 120.06700 * 0.02562 * 28 27 26 43 43 H 1.07996 * 119.93757 * 180.29798 * 29 28 27 44 44 H 1.08004 * 119.87191 * 179.69592 * 30 29 28 45 45 H 1.08000 * 119.94433 * 180.02562 * 31 30 29 46 46 H 1.07997 * 120.06557 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1660 1.1869 0.0000 4 1 1.6601 2.0145 0.0004 5 6 3.5419 1.2331 0.0005 6 7 4.1683 2.3866 0.0010 7 6 4.3005 -0.0257 0.0005 8 6 5.7325 -0.0205 0.0016 9 7 6.8685 -0.0164 0.0022 10 6 3.5855 -1.2317 0.0005 11 6 4.2968 -2.5253 0.0011 12 6 4.2388 -3.3563 1.1236 13 6 4.9077 -4.5596 1.1226 14 6 5.6318 -4.9539 0.0020 15 8 6.2852 -6.1421 0.0025 16 6 7.0712 -6.4087 -1.0596 17 1 7.2241 -5.6575 -1.8202 18 6 7.6833 -7.6480 -1.1757 19 7 7.4972 -8.5627 -0.2492 20 14 8.7720 -8.0177 -2.6479 21 1 9.9019 -7.0547 -2.6823 22 1 9.3033 -9.3999 -2.5359 23 1 7.9765 -7.8923 -3.8956 24 6 5.6915 -4.1297 -1.1173 25 6 5.0297 -2.9223 -1.1212 26 6 2.1671 -1.1889 -0.0065 27 6 1.3958 -2.4553 -0.0139 28 6 1.3876 -3.2627 -1.1503 29 6 0.6730 -4.4434 -1.1493 30 6 -0.0438 -4.8201 -0.0277 31 6 -0.0442 -4.0199 1.1006 32 6 0.6718 -2.8402 1.1134 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3634 -0.8900 0.5138 35 1 -0.3633 0.8899 0.5138 36 1 3.6615 3.2137 0.0014 37 1 3.6735 -3.0526 1.9924 38 1 4.8670 -5.2001 1.9913 39 1 7.9256 -9.4292 -0.3301 40 1 6.2578 -4.4371 -1.9839 41 1 5.0768 -2.2827 -1.9902 42 1 1.9435 -2.9675 -2.0278 43 1 0.6697 -5.0721 -2.0273 44 1 -0.6056 -5.7425 -0.0331 45 1 -0.6053 -4.3192 1.9736 46 1 0.6711 -2.2164 1.9950 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408977652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:28 Heat of formation + Delta-G solvation = 105.030724 kcal Electronic energy + Delta-G solvation = -32439.106351 eV Core-core repulsion = 28259.837590 eV Total energy + Delta-G solvation = -4179.268762 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.137 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.95933 -39.05225 -38.84406 -36.97824 -36.05373 -35.06276 -33.75919 -32.32904 -31.61335 -30.87741 -30.28991 -29.65439 -28.72169 -27.39866 -25.55421 -23.60491 -22.84071 -22.43366 -22.12441 -21.89145 -20.62584 -19.24842 -18.08804 -17.91689 -17.17750 -16.80311 -16.50356 -15.98438 -15.40769 -15.25404 -14.64978 -14.57073 -14.53284 -14.24534 -13.83625 -13.68830 -13.54180 -13.50894 -13.33027 -13.26516 -12.94101 -12.80608 -12.76039 -12.52641 -12.44539 -12.22967 -11.94451 -11.76245 -11.40424 -11.19667 -11.15153 -10.93737 -10.91049 -10.70662 -10.51697 -10.48475 -9.94769 -9.91369 -9.40918 -8.90690 -8.85315 -8.69246 -8.27333 -7.49991 -7.23201 -6.53344 -4.10205 0.37533 1.24205 1.46831 1.66529 2.15868 2.19829 2.48074 2.86523 3.10819 3.12213 3.14539 3.25129 3.78821 3.91759 3.96455 4.07273 4.16977 4.41288 4.46875 4.58368 4.71940 4.96494 4.98895 5.03054 5.03929 5.10124 5.17439 5.18914 5.39247 5.47226 5.56565 5.57250 5.65186 5.67180 5.69314 5.85935 5.92632 6.08037 6.12166 6.15173 6.32332 6.43907 6.49567 6.56718 6.58165 6.62757 6.81395 6.85541 6.98176 7.03004 7.13381 7.23921 7.35213 7.70439 7.91703 8.02635 8.14332 8.92008 9.60083 10.63791 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.009387 B = 0.003203 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.077805 B = 8738.773913 C =10892.130624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.199 3.801 3 N -0.633 5.633 4 H 0.413 0.587 5 C 0.450 3.550 6 N -0.760 5.760 7 C -0.103 4.103 8 C 0.289 3.711 9 N -0.425 5.425 10 C 0.165 3.835 11 C -0.187 4.187 12 C -0.034 4.034 13 C -0.192 4.192 14 C 0.167 3.833 15 O -0.168 6.168 16 C -0.392 4.392 17 H 0.094 0.906 18 C 0.042 3.958 19 N -0.857 5.857 20 Si 0.941 3.059 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.233 4.233 25 C -0.038 4.038 26 C -0.160 4.160 27 C -0.014 4.014 28 C -0.090 4.090 29 C -0.113 4.113 30 C -0.118 4.118 31 C -0.120 4.120 32 C -0.113 4.113 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.331 0.669 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.272 0.728 40 H 0.130 0.870 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.707 13.946 -0.106 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.088 3.912 3 N -0.253 5.253 4 H 0.251 0.749 5 C 0.178 3.822 6 N -0.391 5.391 7 C -0.112 4.112 8 C -0.025 4.025 9 N -0.101 5.101 10 C 0.156 3.844 11 C -0.188 4.188 12 C -0.052 4.052 13 C -0.212 4.212 14 C 0.112 3.888 15 O -0.069 6.069 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.163 4.163 19 N -0.490 5.490 20 Si 0.765 3.235 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.252 4.252 25 C -0.056 4.056 26 C -0.169 4.169 27 C -0.015 4.015 28 C -0.108 4.108 29 C -0.131 4.131 30 C -0.136 4.136 31 C -0.138 4.138 32 C -0.131 4.131 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.082 0.918 40 H 0.147 0.853 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.735 13.811 0.107 23.276 hybrid contribution -1.034 0.473 -0.790 1.384 sum -19.769 14.284 -0.682 24.399 Atomic orbital electron populations 1.21264 0.88163 1.05145 1.04605 1.20350 0.94509 0.85273 0.91100 1.43313 1.06870 1.08052 1.67085 0.74942 1.20621 0.78110 0.93481 0.89975 1.70622 1.37199 0.98295 1.33019 1.16182 0.85230 0.89030 1.20763 1.24422 0.91359 0.93166 0.93573 1.81165 1.11745 1.07479 1.09722 1.19171 0.90789 0.91517 0.82886 1.17928 1.08430 0.94794 0.97697 1.20479 0.96513 0.92268 0.95972 1.20064 1.04669 0.98281 0.98151 1.19535 0.89893 0.86548 0.92853 1.83936 1.51336 1.29179 1.42488 1.21340 1.24174 1.00145 1.01116 0.88897 1.25318 0.97847 0.94410 0.98744 1.70009 1.41036 1.05319 1.32668 0.85781 0.79665 0.78185 0.79898 1.19318 1.20169 1.19353 1.21027 1.07341 0.96658 1.00214 1.20671 0.93817 0.95196 0.95934 1.17544 0.91406 0.91347 1.16565 1.18120 0.96328 0.92964 0.94049 1.21183 0.97741 0.94136 0.97716 1.21087 0.97088 0.96356 0.98605 1.21168 0.99517 0.99413 0.93540 1.20999 0.99897 0.94787 0.98126 1.21133 0.97697 0.97093 0.97188 0.89036 0.88025 0.90588 0.85309 0.86899 0.86230 0.91765 0.85264 0.87464 0.86125 0.86126 0.86407 0.86274 0.86238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.54 9.58 36.00 0.34 -0.20 16 2 C 0.20 1.48 6.81 -81.66 -0.56 0.92 16 3 N -0.63 -4.70 5.34 -6.87 -0.04 -4.74 16 4 H 0.41 1.66 8.67 -40.82 -0.35 1.30 16 5 C 0.45 5.37 7.96 -154.07 -1.23 4.14 16 6 N -0.76 -9.92 13.62 32.40 0.44 -9.48 16 7 C -0.10 -1.51 5.98 -103.70 -0.62 -2.13 16 8 C 0.29 5.25 13.75 -22.47 -0.31 4.95 16 9 N -0.43 -8.70 18.54 41.84 0.78 -7.92 16 10 C 0.16 2.25 5.37 -103.92 -0.56 1.70 16 11 C -0.19 -3.09 3.59 -104.91 -0.38 -3.47 16 12 C -0.03 -0.58 9.22 -39.21 -0.36 -0.94 16 13 C -0.19 -3.93 9.97 -39.46 -0.39 -4.32 16 14 C 0.17 3.92 6.66 -38.92 -0.26 3.67 16 15 O -0.17 -4.67 9.75 0.60 0.01 -4.66 16 16 C -0.39 -10.76 9.44 30.90 0.29 -10.47 16 17 H 0.09 2.37 5.28 -52.49 -0.28 2.10 16 18 C 0.04 1.14 5.49 -17.51 -0.10 1.05 16 19 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 20 Si 0.94 20.31 29.55 -169.99 -5.02 15.28 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 C -0.23 -4.97 9.11 -39.45 -0.36 -5.33 16 25 C -0.04 -0.69 9.23 -39.20 -0.36 -1.05 16 26 C -0.16 -1.67 5.26 -105.17 -0.55 -2.23 16 27 C -0.01 -0.14 3.18 -104.90 -0.33 -0.48 16 28 C -0.09 -1.01 9.31 -39.23 -0.37 -1.38 16 29 C -0.11 -1.24 10.03 -39.63 -0.40 -1.63 16 30 C -0.12 -1.18 10.04 -39.51 -0.40 -1.58 16 31 C -0.12 -1.10 10.03 -39.63 -0.40 -1.50 16 32 C -0.11 -1.04 7.86 -39.23 -0.31 -1.35 16 33 H 0.09 0.31 8.14 -51.92 -0.42 -0.12 16 34 H 0.10 0.46 5.40 -51.93 -0.28 0.18 16 35 H 0.08 0.14 8.13 -51.93 -0.42 -0.28 16 36 H 0.33 3.30 8.83 -40.82 -0.36 2.94 16 37 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.13 2.79 5.69 -52.49 -0.30 2.49 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.12 0.89 8.04 -52.49 -0.42 0.47 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -34.13 402.57 -9.54 -43.67 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.93 Total: 7.28 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -7.59 Total: -21.63 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 1.94 Total: -46.00 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.01 Total: -4.66 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.13 -9.54 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408977652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.699 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds