Wall clock time and date at job start Tue Mar 31 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29404 * 1 3 3 Si 1.86797 * 120.00243 * 2 1 4 4 H 1.48494 * 109.47289 * 270.00244 * 3 2 1 5 5 H 1.48501 * 109.46622 * 30.00184 * 3 2 1 6 6 H 1.48498 * 109.47468 * 149.99661 * 3 2 1 7 7 C 1.46570 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99931 * 179.97438 * 7 2 1 9 9 O 1.22317 * 119.99871 * 0.02562 * 7 2 1 10 10 C 1.35565 * 117.00090 * 185.11313 * 9 7 2 11 11 C 1.38767 * 120.16200 * 354.30163 * 10 9 7 12 12 C 1.38095 * 120.08008 * 180.30111 * 11 10 9 13 13 C 1.38541 * 120.41329 * 359.72145 * 12 11 10 14 14 C 1.37879 * 120.32786 * 359.97438 * 13 12 11 15 15 C 1.39697 * 119.90698 * 0.02562 * 14 13 12 16 16 C 1.47278 * 120.20047 * 179.97438 * 15 14 13 17 17 N 1.29876 * 119.99612 * 180.02562 * 16 15 14 18 18 N 1.40104 * 119.99866 * 180.02562 * 17 16 15 19 19 C 1.34776 * 120.00323 * 180.02562 * 18 17 16 20 20 O 1.21629 * 119.99492 * 359.97438 * 19 18 17 21 21 C 1.47484 * 120.00112 * 179.97438 * 19 18 17 22 22 C 1.39726 * 120.19234 * 0.02562 * 21 19 18 23 23 C 1.37789 * 119.90159 * 179.97438 * 22 21 19 24 24 N 1.48015 * 119.84588 * 180.02562 * 23 22 21 25 25 O 1.31701 * 120.00296 * 359.97438 * 24 23 22 26 26 O 1.31703 * 119.99773 * 180.02562 * 24 23 22 27 27 C 1.38550 * 120.30366 * 359.97438 * 23 22 21 28 28 C 1.38065 * 120.39324 * 359.76947 * 27 23 22 29 29 C 1.38698 * 120.08763 * 0.50844 * 28 27 23 30 30 O 1.35653 * 120.14730 * 179.74573 * 29 28 27 31 31 H 0.96996 * 120.00183 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.95840 * 0.02562 * 11 10 9 33 33 H 1.07997 * 119.79172 * 179.74286 * 12 11 10 34 34 H 1.07998 * 119.83884 * 180.02562 * 13 12 11 35 35 H 1.08004 * 120.04774 * 179.97438 * 14 13 12 36 36 H 1.07998 * 119.99867 * 0.02562 * 16 15 14 37 37 H 0.97007 * 120.00034 * 359.97438 * 18 17 16 38 38 H 1.07996 * 120.05151 * 359.96214 * 22 21 19 39 39 H 1.08003 * 119.80360 * 180.02562 * 27 23 22 40 40 H 1.07997 * 119.95545 * 180.25792 * 28 27 23 41 41 H 0.96700 * 114.00363 * 269.71855 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2940 0.0000 0.0000 3 14 2.2281 1.6177 0.0000 4 1 2.4756 2.0464 -1.4000 5 1 1.4255 2.6525 0.7001 6 1 3.5256 1.4402 0.7001 7 6 2.0269 -1.2693 -0.0006 8 1 3.1069 -1.2693 -0.0010 9 8 1.4153 -2.3286 -0.0015 10 6 2.1494 -3.4632 0.1057 11 6 3.5356 -3.4008 0.0913 12 6 4.2817 -4.5582 0.1943 13 6 3.6554 -5.7877 0.3184 14 6 2.2792 -5.8688 0.3409 15 6 1.5111 -4.7065 0.2376 16 6 0.0407 -4.7857 0.2603 17 7 -0.6695 -3.7026 0.1635 18 7 -2.0683 -3.7779 0.1857 19 6 -2.8054 -2.6540 0.0847 20 8 -2.2560 -1.5744 -0.0252 21 6 -4.2779 -2.7333 0.1075 22 6 -4.9131 -3.9714 0.2341 23 6 -6.2892 -4.0385 0.2552 24 7 -6.9607 -5.3506 0.3900 25 8 -6.2432 -6.4506 0.4888 26 8 -8.2758 -5.4183 0.4100 27 6 -7.0471 -2.8833 0.1520 28 6 -6.4323 -1.6529 0.0317 29 6 -5.0483 -1.5671 0.0029 30 8 -4.4431 -0.3593 -0.1205 31 1 -0.4850 0.8400 -0.0004 32 1 4.0315 -2.4462 -0.0051 33 1 5.3603 -4.5046 0.1784 34 1 4.2480 -6.6870 0.3987 35 1 1.7956 -6.8297 0.4373 36 1 -0.4470 -5.7444 0.3575 37 1 -2.5064 -4.6390 0.2730 38 1 -4.3263 -4.8745 0.3151 39 1 -8.1252 -2.9452 0.1699 40 1 -7.0299 -0.7566 -0.0441 41 1 -4.2768 -0.0942 -1.0355 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409160899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:46 Heat of formation + Delta-G solvation = 77.135006 kcal Electronic energy + Delta-G solvation = -32427.484136 eV Core-core repulsion = 27668.030617 eV Total energy + Delta-G solvation = -4759.453520 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.104 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -41.06176 -40.06835 -39.25131 -38.29702 -37.03171 -36.97319 -35.48167 -34.71068 -32.81433 -32.67746 -31.48597 -31.24408 -29.35226 -28.52282 -26.60097 -25.29209 -24.73947 -23.30204 -22.40420 -21.34966 -20.63691 -20.02395 -19.04626 -18.83204 -18.42603 -18.27319 -17.32009 -16.66210 -16.40707 -16.35497 -15.98727 -15.84165 -14.97947 -14.88508 -14.54802 -14.48667 -14.19592 -14.16227 -13.96971 -13.53608 -13.43527 -12.96818 -12.89331 -12.60411 -12.42713 -12.01916 -11.86745 -11.66080 -11.45238 -11.24078 -11.19557 -10.94722 -10.88614 -10.72494 -10.67987 -10.37002 -9.91508 -9.61909 -9.47677 -9.40232 -9.03476 -8.95109 -8.83466 -7.61903 -7.00503 -6.69626 -3.57579 -1.03016 0.14256 0.62272 0.78558 1.81679 2.43763 2.54288 2.89316 3.01102 3.03115 3.07442 3.21486 3.50679 3.78722 3.80370 3.83971 3.90115 4.29648 4.41456 4.59429 4.65317 4.96835 5.03455 5.11026 5.12407 5.26092 5.37537 5.41583 5.48879 5.63972 5.77152 5.87395 5.97927 6.24131 6.43437 6.45278 6.63025 6.86812 7.02285 7.10434 7.23029 7.35895 7.46529 7.60845 7.61717 7.80296 8.05834 8.24215 8.58376 9.09120 9.96242 10.40524 Molecular weight = 371.10amu Principal moments of inertia in cm(-1) A = 0.009397 B = 0.002940 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.944430 B = 9520.066439 C =12479.199763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.042 3.958 3 Si 0.933 3.067 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.397 4.397 8 H 0.088 0.912 9 O -0.042 6.042 10 C 0.093 3.907 11 C -0.240 4.240 12 C -0.056 4.056 13 C -0.259 4.259 14 C -0.028 4.028 15 C -0.167 4.167 16 C 0.110 3.890 17 N -0.209 5.209 18 N -0.589 5.589 19 C 0.544 3.456 20 O -0.411 6.411 21 C -0.147 4.147 22 C -0.009 4.009 23 C -0.026 4.026 24 N -0.014 5.014 25 O -0.170 6.170 26 O -0.172 6.172 27 C -0.020 4.020 28 C -0.154 4.154 29 C 0.233 3.767 30 O -0.462 6.462 31 H 0.284 0.716 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.362 0.638 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 -2.105 -1.559 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.105 0.895 9 O 0.071 5.929 10 C 0.031 3.969 11 C -0.260 4.260 12 C -0.076 4.076 13 C -0.279 4.279 14 C -0.049 4.049 15 C -0.173 4.173 16 C -0.095 4.095 17 N -0.017 5.017 18 N -0.331 5.331 19 C 0.327 3.673 20 O -0.277 6.277 21 C -0.153 4.153 22 C -0.029 4.029 23 C -0.112 4.112 24 N 0.465 4.535 25 O -0.364 6.364 26 O -0.366 6.366 27 C -0.039 4.039 28 C -0.173 4.173 29 C 0.185 3.815 30 O -0.276 6.276 31 H 0.097 0.903 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.199 0.801 38 H 0.176 0.824 39 H 0.180 0.820 40 H 0.180 0.820 41 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -11.352 0.612 -1.234 11.436 hybrid contribution -0.065 -1.113 -0.262 1.145 sum -11.418 -0.502 -1.496 11.526 Atomic orbital electron populations 1.69160 1.06666 1.29357 1.29864 1.27018 0.95351 0.98522 0.97107 0.85822 0.79818 0.79568 0.79159 1.19523 1.19944 1.18566 1.21061 0.92964 0.83234 1.50340 0.89513 1.80452 1.36387 1.11360 1.64749 1.19153 0.89427 0.86424 1.01865 1.20709 0.93495 0.98398 1.13367 1.20648 0.97793 0.92461 0.96671 1.20172 0.93924 0.96616 1.17199 1.20539 0.93485 0.95085 0.95768 1.16928 0.88189 0.91461 1.20752 1.24291 0.94317 0.93195 0.97686 1.75940 0.85727 1.23838 1.16239 1.46977 1.04291 1.08052 1.73807 1.17304 0.84016 0.85055 0.80966 1.91192 1.70201 1.25295 1.40977 1.20780 0.95757 0.92081 1.06687 1.21222 0.91758 0.99251 0.90708 1.20169 0.92334 0.81574 1.17170 1.50390 1.03092 1.03992 0.96038 1.96302 1.63579 1.21330 1.55140 1.96273 0.88913 1.95578 1.55788 1.21096 1.02103 0.89341 0.91390 1.21515 0.93683 0.98125 1.03973 1.18864 0.89629 0.85014 0.88004 1.84726 1.79761 1.29969 1.33106 0.90336 0.86347 0.88256 0.88219 0.87543 0.88707 0.80103 0.82363 0.81981 0.81994 0.72545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.05 12.12 55.98 0.68 -18.37 16 2 C 0.04 1.05 5.69 -15.22 -0.09 0.96 16 3 Si 0.93 18.76 29.64 -169.99 -5.04 13.72 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.40 -10.50 9.47 34.09 0.32 -10.17 16 8 H 0.09 2.18 5.03 -52.49 -0.26 1.91 16 9 O -0.04 -1.13 7.16 21.47 0.15 -0.98 16 10 C 0.09 2.28 6.60 -38.58 -0.25 2.02 16 11 C -0.24 -5.34 9.12 -39.44 -0.36 -5.70 16 12 C -0.06 -1.08 10.03 -39.52 -0.40 -1.48 16 13 C -0.26 -4.71 10.03 -39.60 -0.40 -5.11 16 14 C -0.03 -0.51 9.79 -39.17 -0.38 -0.89 16 15 C -0.17 -3.60 5.88 -104.87 -0.62 -4.21 16 16 C 0.11 2.17 10.75 -14.71 -0.16 2.02 16 17 N -0.21 -4.63 8.90 32.13 0.29 -4.34 16 18 N -0.59 -10.45 6.21 30.45 0.19 -10.26 16 19 C 0.54 9.72 7.88 -12.49 -0.10 9.62 16 20 O -0.41 -9.13 13.96 -16.63 -0.23 -9.36 16 21 C -0.15 -1.87 5.89 -104.85 -0.62 -2.49 16 22 C -0.01 -0.10 9.06 -39.19 -0.36 -0.46 16 23 C -0.03 -0.27 6.88 -80.00 -0.55 -0.83 16 24 N -0.01 -0.18 4.98 33.94 0.17 -0.01 16 25 O -0.17 -2.37 19.13 -31.57 -0.60 -2.98 16 26 O -0.17 -2.26 19.14 -31.57 -0.60 -2.86 16 27 C -0.02 -0.16 9.56 -39.53 -0.38 -0.54 16 28 C -0.15 -1.14 9.98 -39.47 -0.39 -1.54 16 29 C 0.23 2.51 6.72 -38.69 -0.26 2.25 16 30 O -0.46 -5.47 11.58 -40.54 -0.47 -5.94 16 31 H 0.28 6.84 8.26 -40.82 -0.34 6.51 16 32 H 0.12 2.60 5.69 -52.49 -0.30 2.30 16 33 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.10 1.46 8.02 -52.49 -0.42 1.04 16 37 H 0.36 4.92 6.68 -182.59 -1.22 3.70 16 38 H 0.16 1.58 5.91 -52.49 -0.31 1.27 16 39 H 0.16 0.95 7.56 -52.48 -0.40 0.55 16 40 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.41 3.35 9.06 45.56 0.41 3.76 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -34.00 375.91 -8.11 -42.11 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -3.32 Total: 10.15 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -4.98 Total: -16.54 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 1.32 Total: -32.98 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.76 Total: -22.12 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.04 Total: 13.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.00 -8.11 -42.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409160899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.247 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds