Wall clock time and date at job start Tue Mar 31 2020 07:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99994 * 2 1 4 4 H 1.48500 * 109.47318 * 240.00727 * 3 2 1 5 5 H 1.48503 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46826 * 120.00263 * 3 2 1 7 7 C 1.37871 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00085 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46964 * 182.39671 * 9 7 2 11 11 C 1.46896 * 110.99809 * 290.12712 * 10 9 7 12 12 C 1.53242 * 109.33950 * 187.25667 * 11 10 9 13 13 N 1.47083 * 108.51980 * 306.17336 * 12 11 10 14 14 C 1.36969 * 120.87995 * 230.91294 * 13 12 11 15 15 N 1.31261 * 126.49096 * 359.68237 * 14 13 12 16 16 C 1.31499 * 120.41081 * 179.75336 * 15 14 13 17 17 O 1.22060 * 122.66682 * 180.26373 * 16 15 14 18 18 C 1.47265 * 114.66407 * 0.55247 * 16 15 14 19 19 C 1.35708 * 128.20873 * 179.71030 * 18 16 15 20 20 C 1.46816 * 120.00329 * 7.23328 * 19 18 16 21 21 C 1.40054 * 120.12371 * 218.47418 * 20 19 18 22 22 C 1.37644 * 119.87720 * 179.76551 * 21 20 19 23 23 C 1.39030 * 120.12518 * 0.50950 * 22 21 20 24 24 O 1.35750 * 119.88387 * 179.76055 * 23 22 21 25 25 C 1.39037 * 120.24209 * 359.74605 * 23 22 21 26 26 C 1.37647 * 120.12298 * 359.97438 * 25 23 22 27 27 S 1.77267 * 126.49163 * 180.02562 * 14 13 12 28 28 C 1.47079 * 118.23985 * 51.18090 * 13 12 11 29 29 C 1.46895 * 110.99911 * 54.43256 * 10 9 7 30 30 H 0.96998 * 119.99981 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47047 * 62.39480 * 9 7 2 32 32 H 1.08996 * 109.46749 * 302.39446 * 9 7 2 33 33 H 1.08999 * 109.49445 * 67.29506 * 11 10 9 34 34 H 1.08999 * 109.49778 * 307.21319 * 11 10 9 35 35 H 1.08993 * 109.63107 * 186.46060 * 12 11 10 36 36 H 1.09000 * 109.62828 * 65.87768 * 12 11 10 37 37 H 1.07997 * 119.99471 * 187.23776 * 19 18 16 38 38 H 1.08005 * 120.06043 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.94326 * 180.24885 * 22 21 20 40 40 H 0.96702 * 114.00178 * 269.98349 * 24 23 22 41 41 H 1.07997 * 119.93632 * 180.02562 * 25 23 22 42 42 H 1.07995 * 120.06136 * 180.02562 * 26 25 23 43 43 H 1.09002 * 109.62489 * 68.52741 * 28 13 12 44 44 H 1.08994 * 109.63133 * 189.10771 * 28 13 12 45 45 H 1.09001 * 109.49190 * 292.70024 * 29 10 9 46 46 H 1.08997 * 109.49986 * 52.75729 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2047 -3.6151 0.0568 11 6 2.9512 -3.7348 -1.2027 12 6 3.7986 -5.0112 -1.1711 13 7 4.6276 -4.9915 0.0438 14 6 5.9784 -5.2082 -0.0233 15 7 6.6767 -5.4536 -1.1073 16 6 7.9764 -5.6396 -1.0340 17 8 8.6660 -5.8656 -2.0154 18 6 8.5327 -5.5600 0.3272 19 6 9.8238 -5.7123 0.7166 20 6 10.8847 -5.8358 -0.2907 21 6 11.9507 -6.7203 -0.0840 22 6 12.9401 -6.8355 -1.0340 23 6 12.8882 -6.0683 -2.1922 24 8 13.8691 -6.1823 -3.1236 25 6 11.8350 -5.1847 -2.4002 26 6 10.8372 -5.0655 -1.4596 27 16 7.1133 -5.2185 1.3383 28 6 3.9667 -4.7390 1.3332 29 6 3.1126 -3.4734 1.2029 30 1 -0.4850 0.8400 0.0004 31 1 0.6567 -2.5755 -0.9109 32 1 0.5930 -2.5387 0.8674 33 1 3.6021 -2.8689 -1.3236 34 1 2.2514 -3.7836 -2.0371 35 1 4.4401 -5.0468 -2.0515 36 1 3.1458 -5.8839 -1.1547 37 1 10.0708 -5.7427 1.7675 38 1 11.9942 -7.3139 0.8172 39 1 13.7606 -7.5202 -0.8775 40 1 14.6104 -5.5757 -2.9905 41 1 11.7994 -4.5914 -3.3019 42 1 10.0194 -4.3792 -1.6223 43 1 3.3300 -5.5856 1.5903 44 1 4.7193 -4.5946 2.1083 45 1 3.7613 -2.6111 1.0486 46 1 2.5300 -3.3320 2.1132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020457304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:33 Heat of formation + Delta-G solvation = 31.624331 kcal Electronic energy + Delta-G solvation = -30242.898834 eV Core-core repulsion = 26032.746310 eV Total energy + Delta-G solvation = -4210.152524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 373.125 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.37389 -39.74012 -39.05971 -37.21029 -36.37393 -34.68266 -33.44886 -32.48497 -31.29205 -31.18095 -29.19431 -28.41657 -25.87480 -24.61152 -23.74389 -23.66656 -22.92956 -22.10161 -21.66549 -20.00978 -18.84659 -18.75327 -18.32371 -17.38605 -16.50696 -16.07124 -15.95219 -15.74947 -15.43927 -15.36580 -14.96497 -14.83291 -14.71607 -14.50784 -14.26537 -14.07818 -13.87534 -13.66610 -13.34445 -12.84429 -12.55846 -12.39578 -12.26033 -12.14484 -11.87252 -11.74997 -11.43796 -11.23282 -11.19216 -10.94288 -10.90897 -10.79505 -10.67044 -10.47677 -10.11962 -10.04917 -9.82390 -9.37789 -9.14024 -8.93915 -8.59631 -8.56548 -7.95467 -7.50382 -6.18587 -4.28723 -0.12128 0.54482 0.89925 1.19865 1.51454 1.70518 2.41743 3.19181 3.25199 3.27403 3.40588 3.51264 3.90018 3.98633 4.28170 4.38944 4.46907 4.61207 4.62586 4.69386 4.97591 5.05140 5.05973 5.16204 5.16343 5.22620 5.35999 5.37547 5.50373 5.53527 5.56454 5.60927 5.79074 5.86028 6.02411 6.15369 6.17839 6.28274 6.34720 6.42723 6.43464 6.51245 6.66072 6.99133 7.32961 7.33985 7.60905 7.67374 7.75287 7.94524 7.96051 8.07949 8.79534 9.39572 10.86880 Molecular weight = 373.12amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.001977 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.991808 B =14159.115820 C =14945.282006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.056 0.944 9 C 0.189 3.811 10 N -0.540 5.540 11 C 0.046 3.954 12 C 0.115 3.885 13 N -0.517 5.517 14 C 0.485 3.515 15 N -0.654 5.654 16 C 0.548 3.452 17 O -0.467 6.467 18 C -0.245 4.245 19 C 0.044 3.956 20 C -0.097 4.097 21 C -0.072 4.072 22 C -0.162 4.162 23 C 0.123 3.877 24 O -0.500 6.500 25 C -0.155 4.155 26 C -0.020 4.020 27 S -0.043 6.043 28 C 0.109 3.891 29 C 0.049 3.951 30 H 0.265 0.735 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.391 0.609 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.052 0.948 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.760 -12.493 4.359 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.074 0.926 9 C 0.064 3.936 10 N -0.265 5.265 11 C -0.083 4.083 12 C -0.008 4.008 13 N -0.226 5.226 14 C 0.108 3.892 15 N -0.408 5.408 16 C 0.327 3.673 17 O -0.342 6.342 18 C -0.364 4.364 19 C 0.017 3.983 20 C -0.100 4.100 21 C -0.091 4.091 22 C -0.181 4.181 23 C 0.079 3.921 24 O -0.310 6.310 25 C -0.173 4.173 26 C -0.038 4.038 27 S 0.198 5.802 28 C -0.013 4.013 29 C -0.080 4.080 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.247 0.753 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 19.701 -13.212 4.177 24.087 hybrid contribution 1.547 1.977 -0.486 2.557 sum 21.248 -11.235 3.691 24.317 Atomic orbital electron populations 1.69916 1.06003 1.27220 1.49341 1.24942 0.94779 0.99219 0.94608 0.86703 0.79724 0.83189 0.78723 1.20212 1.21067 1.20195 1.21647 0.93166 0.92026 1.52796 0.92618 1.19783 0.90425 0.85029 0.98406 1.62558 1.16442 1.46553 1.00911 1.22343 0.96535 0.94810 0.94655 1.22391 0.92896 1.00196 0.85364 1.46979 1.00574 1.63720 1.11315 1.24397 0.89486 0.84402 0.90893 1.66623 1.08884 1.37958 1.27301 1.18883 0.83819 0.77035 0.87529 1.90858 1.60426 1.43502 1.39440 1.25971 0.97461 1.13591 0.99339 1.21683 0.88712 0.89049 0.98865 1.18786 0.95189 1.00377 0.95608 1.21103 0.92312 0.96699 0.98940 1.21223 1.00935 1.02153 0.93754 1.18715 0.90106 0.95211 0.88108 1.84783 1.32309 1.63732 1.50217 1.21327 0.95474 1.00122 1.00414 1.21308 0.95294 0.96632 0.90588 1.85450 1.00831 1.83332 1.10605 1.22470 0.96234 1.01010 0.81555 1.22285 0.95193 0.93676 0.96849 0.92553 0.94922 0.94426 0.93534 0.89330 0.88044 0.89620 0.83889 0.85186 0.85224 0.75313 0.85192 0.85166 0.88848 0.89728 0.92996 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.62 13.29 55.43 0.74 -23.88 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.56 -14.06 7.79 -34.44 -0.27 -14.33 16 8 H 0.06 1.40 5.88 -52.48 -0.31 1.09 16 9 C 0.19 4.33 5.16 -4.97 -0.03 4.30 16 10 N -0.54 -9.76 4.83 -235.76 -1.14 -10.90 16 11 C 0.05 0.77 5.32 -3.70 -0.02 0.75 16 12 C 0.12 1.59 6.67 -3.60 -0.02 1.56 16 13 N -0.52 -7.02 3.07 -172.87 -0.53 -7.55 16 14 C 0.48 6.95 8.08 -87.95 -0.71 6.24 16 15 N -0.65 -10.91 9.57 -13.32 -0.13 -11.04 16 16 C 0.55 9.00 7.39 -14.03 -0.10 8.89 16 17 O -0.47 -8.57 13.59 4.86 0.07 -8.50 16 18 C -0.24 -3.15 6.36 -36.82 -0.23 -3.38 16 19 C 0.04 0.45 9.87 -37.02 -0.37 0.08 16 20 C -0.10 -1.06 5.38 -105.07 -0.56 -1.63 16 21 C -0.07 -0.64 9.79 -39.12 -0.38 -1.03 16 22 C -0.16 -1.46 9.96 -39.50 -0.39 -1.86 16 23 C 0.12 1.26 6.71 -38.99 -0.26 1.00 16 24 O -0.50 -4.40 13.49 -18.96 -0.26 -4.65 16 25 C -0.15 -1.76 9.97 -39.50 -0.39 -2.16 16 26 C -0.02 -0.25 6.93 -39.11 -0.27 -0.52 16 27 S -0.04 -0.51 21.73 -107.50 -2.34 -2.85 16 28 C 0.11 1.32 6.64 -3.60 -0.02 1.29 16 29 C 0.05 0.78 5.06 -3.70 -0.02 0.76 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.03 0.81 7.97 -51.93 -0.41 0.39 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.88 7.28 -51.93 -0.38 0.51 16 34 H 0.09 1.44 7.99 -51.93 -0.41 1.03 16 35 H 0.10 1.44 7.34 -51.93 -0.38 1.06 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.39 1.37 9.06 45.56 0.41 1.78 16 41 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.13 1.80 6.22 -52.49 -0.33 1.47 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 0.88 6.68 -51.93 -0.35 0.53 16 45 H 0.05 0.94 6.49 -51.93 -0.34 0.60 16 46 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -32.28 390.95 -11.88 -44.17 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.01 Total: 2.16 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -4.16 Total: 1.69 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -1.06 Total: -53.37 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.19 Total: -13.16 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -2.34 Total: -2.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.28 -11.88 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020457304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.793 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds