Wall clock time and date at job start Tue Mar 31 2020 07:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99994 * 2 1 4 4 H 1.48500 * 109.47318 * 240.00727 * 3 2 1 5 5 H 1.48503 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46826 * 120.00263 * 3 2 1 7 7 C 1.37871 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00085 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46964 * 182.39671 * 9 7 2 11 11 C 1.46896 * 110.99809 * 290.12712 * 10 9 7 12 12 C 1.53242 * 109.33950 * 187.25667 * 11 10 9 13 13 N 1.47083 * 108.51980 * 306.17336 * 12 11 10 14 14 C 1.36969 * 120.87995 * 230.91294 * 13 12 11 15 15 N 1.31261 * 126.49096 * 359.68237 * 14 13 12 16 16 C 1.31499 * 120.41081 * 179.75336 * 15 14 13 17 17 O 1.22060 * 122.66682 * 180.26373 * 16 15 14 18 18 C 1.47265 * 114.66407 * 0.55247 * 16 15 14 19 19 C 1.35708 * 128.20873 * 179.71030 * 18 16 15 20 20 C 1.46816 * 120.00329 * 7.23328 * 19 18 16 21 21 C 1.40054 * 120.12371 * 218.47418 * 20 19 18 22 22 C 1.37644 * 119.87720 * 179.76551 * 21 20 19 23 23 C 1.39030 * 120.12518 * 0.50950 * 22 21 20 24 24 O 1.35750 * 119.88387 * 179.76055 * 23 22 21 25 25 C 1.39037 * 120.24209 * 359.74605 * 23 22 21 26 26 C 1.37647 * 120.12298 * 359.97438 * 25 23 22 27 27 S 1.77267 * 126.49163 * 180.02562 * 14 13 12 28 28 C 1.47079 * 118.23985 * 51.18090 * 13 12 11 29 29 C 1.46895 * 110.99911 * 54.43256 * 10 9 7 30 30 H 0.96998 * 119.99981 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47047 * 62.39480 * 9 7 2 32 32 H 1.08996 * 109.46749 * 302.39446 * 9 7 2 33 33 H 1.08999 * 109.49445 * 67.29506 * 11 10 9 34 34 H 1.08999 * 109.49778 * 307.21319 * 11 10 9 35 35 H 1.08993 * 109.63107 * 186.46060 * 12 11 10 36 36 H 1.09000 * 109.62828 * 65.87768 * 12 11 10 37 37 H 1.07997 * 119.99471 * 187.23776 * 19 18 16 38 38 H 1.08005 * 120.06043 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.94326 * 180.24885 * 22 21 20 40 40 H 0.96702 * 114.00178 * 269.98349 * 24 23 22 41 41 H 1.07997 * 119.93632 * 180.02562 * 25 23 22 42 42 H 1.07995 * 120.06136 * 180.02562 * 26 25 23 43 43 H 1.09002 * 109.62489 * 68.52741 * 28 13 12 44 44 H 1.08994 * 109.63133 * 189.10771 * 28 13 12 45 45 H 1.09001 * 109.49190 * 292.70024 * 29 10 9 46 46 H 1.08997 * 109.49986 * 52.75729 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2047 -3.6151 0.0568 11 6 2.9512 -3.7348 -1.2027 12 6 3.7986 -5.0112 -1.1711 13 7 4.6276 -4.9915 0.0438 14 6 5.9784 -5.2082 -0.0233 15 7 6.6767 -5.4536 -1.1073 16 6 7.9764 -5.6396 -1.0340 17 8 8.6660 -5.8656 -2.0154 18 6 8.5327 -5.5600 0.3272 19 6 9.8238 -5.7123 0.7166 20 6 10.8847 -5.8358 -0.2907 21 6 11.9507 -6.7203 -0.0840 22 6 12.9401 -6.8355 -1.0340 23 6 12.8882 -6.0683 -2.1922 24 8 13.8691 -6.1823 -3.1236 25 6 11.8350 -5.1847 -2.4002 26 6 10.8372 -5.0655 -1.4596 27 16 7.1133 -5.2185 1.3383 28 6 3.9667 -4.7390 1.3332 29 6 3.1126 -3.4734 1.2029 30 1 -0.4850 0.8400 0.0004 31 1 0.6567 -2.5755 -0.9109 32 1 0.5930 -2.5387 0.8674 33 1 3.6021 -2.8689 -1.3236 34 1 2.2514 -3.7836 -2.0371 35 1 4.4401 -5.0468 -2.0515 36 1 3.1458 -5.8839 -1.1547 37 1 10.0708 -5.7427 1.7675 38 1 11.9942 -7.3139 0.8172 39 1 13.7606 -7.5202 -0.8775 40 1 14.6104 -5.5757 -2.9905 41 1 11.7994 -4.5914 -3.3019 42 1 10.0194 -4.3792 -1.6223 43 1 3.3300 -5.5856 1.5903 44 1 4.7193 -4.5946 2.1083 45 1 3.7613 -2.6111 1.0486 46 1 2.5300 -3.3320 2.1132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020457304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:32 Heat of formation + Delta-G solvation = 8.435701 kcal Electronic energy + Delta-G solvation = -30243.904368 eV Core-core repulsion = 26032.746310 eV Total energy + Delta-G solvation = -4211.158058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 373.125 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.38479 -40.68242 -40.18127 -38.06382 -37.58963 -36.01949 -34.53714 -34.14441 -32.39112 -32.05938 -30.38195 -29.60095 -27.51118 -25.67331 -25.06790 -24.81019 -23.73198 -23.50323 -22.63522 -21.30000 -19.95580 -19.50603 -19.31717 -18.63180 -18.17297 -17.00622 -16.97155 -16.81084 -16.64575 -16.39456 -16.26138 -16.09233 -15.81806 -15.65021 -15.55733 -15.16188 -14.94930 -14.74946 -14.45612 -13.96155 -13.82708 -13.63831 -13.31367 -13.19580 -13.03805 -12.98435 -12.72828 -12.69516 -12.66568 -12.46896 -12.28113 -12.12170 -11.88196 -11.82582 -11.62882 -11.42294 -11.17931 -10.62585 -10.41486 -9.95800 -9.78494 -9.75218 -9.13331 -8.81337 -8.19316 -6.37331 -1.07057 -0.43754 -0.01505 0.42743 0.55563 0.84761 1.34696 1.36457 1.36736 1.43380 2.34187 2.37695 2.67187 2.99482 3.07308 3.19673 3.23725 3.35534 3.69277 3.80206 3.88200 3.91261 3.96697 4.12513 4.23474 4.31127 4.35894 4.41332 4.42265 4.55450 4.67633 4.76130 4.80355 4.85318 4.97214 5.02313 5.06180 5.16699 5.26641 5.32456 5.35888 5.40486 5.49445 5.53707 5.72570 5.80310 5.95444 6.14791 6.36979 6.49251 6.81758 6.81782 6.88638 7.34288 8.83202 Molecular weight = 373.12amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.001977 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.991808 B =14159.115820 C =14945.282006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.558 4.558 8 H 0.053 0.947 9 C 0.201 3.799 10 N -0.533 5.533 11 C 0.051 3.949 12 C 0.128 3.872 13 N -0.521 5.521 14 C 0.472 3.528 15 N -0.694 5.694 16 C 0.537 3.463 17 O -0.508 6.508 18 C -0.287 4.287 19 C 0.086 3.914 20 C -0.122 4.122 21 C -0.057 4.057 22 C -0.164 4.164 23 C 0.126 3.874 24 O -0.510 6.510 25 C -0.179 4.179 26 C -0.035 4.035 27 S 0.021 5.979 28 C 0.120 3.880 29 C 0.049 3.951 30 H 0.265 0.735 31 H 0.009 0.991 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.189 0.811 38 H 0.169 0.831 39 H 0.157 0.843 40 H 0.414 0.586 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.026 0.974 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.527 -14.099 6.974 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.071 0.929 9 C 0.074 3.926 10 N -0.256 5.256 11 C -0.079 4.079 12 C 0.004 3.996 13 N -0.229 5.229 14 C 0.096 3.904 15 N -0.449 5.449 16 C 0.319 3.681 17 O -0.387 6.387 18 C -0.406 4.406 19 C 0.060 3.940 20 C -0.124 4.124 21 C -0.075 4.075 22 C -0.182 4.182 23 C 0.081 3.919 24 O -0.324 6.324 25 C -0.197 4.197 26 C -0.053 4.053 27 S 0.261 5.739 28 C -0.001 4.001 29 C -0.080 4.080 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.206 0.794 38 H 0.186 0.814 39 H 0.175 0.825 40 H 0.274 0.726 41 H 0.143 0.857 42 H 0.122 0.878 43 H 0.138 0.862 44 H 0.127 0.873 45 H 0.045 0.955 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 22.497 -14.815 6.827 27.788 hybrid contribution 0.884 2.445 -1.334 2.923 sum 23.381 -12.369 5.493 27.016 Atomic orbital electron populations 1.70023 1.07282 1.27913 1.50728 1.25695 0.95525 1.02435 0.94647 0.85766 0.78542 0.79577 0.78751 1.20336 1.20740 1.19296 1.21916 0.93146 0.93057 1.51540 0.92910 1.19443 0.90916 0.85986 0.96221 1.62472 1.16872 1.43931 1.02353 1.22300 0.96148 0.95406 0.93998 1.22182 0.92595 0.99052 0.85767 1.47036 1.00578 1.63779 1.11539 1.24555 0.89650 0.84065 0.92088 1.66516 1.09864 1.38915 1.29606 1.19189 0.83788 0.76405 0.88680 1.90823 1.61063 1.45870 1.40960 1.25853 0.99055 1.17898 0.97753 1.22250 0.87243 0.83838 1.00717 1.19017 0.96501 1.01378 0.95540 1.21509 0.90620 0.95434 0.99959 1.21569 1.01726 1.01940 0.93006 1.18840 0.89863 0.94577 0.88587 1.84718 1.32903 1.64589 1.50209 1.21406 0.96406 1.01415 1.00487 1.21206 0.94943 0.97278 0.91903 1.85039 0.98582 1.82675 1.07589 1.22481 0.96482 0.99696 0.81417 1.22327 0.94779 0.95071 0.95852 0.92567 0.97302 0.96350 0.96465 0.89505 0.88679 0.87411 0.79390 0.81384 0.82515 0.72615 0.85690 0.87805 0.86227 0.87349 0.95548 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.18 13.29 21.44 0.28 -51.89 16 2 C 0.02 0.93 5.46 84.65 0.46 1.39 16 3 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.56 -28.80 7.79 25.60 0.20 -28.60 16 8 H 0.05 2.72 5.88 -2.91 -0.02 2.70 16 9 C 0.20 9.52 5.16 85.56 0.44 9.96 16 10 N -0.53 -19.43 4.83 -899.82 -4.35 -23.78 16 11 C 0.05 1.74 5.32 86.39 0.46 2.20 16 12 C 0.13 3.49 6.67 86.35 0.58 4.07 16 13 N -0.52 -13.56 3.07 -700.83 -2.15 -15.71 16 14 C 0.47 13.15 8.08 179.42 1.45 14.60 16 15 N -0.69 -23.62 9.57 -315.93 -3.02 -26.65 16 16 C 0.54 18.08 7.39 87.12 0.64 18.72 16 17 O -0.51 -19.71 13.59 -5.51 -0.07 -19.78 16 18 C -0.29 -6.98 6.36 24.06 0.15 -6.83 16 19 C 0.09 1.49 9.87 23.93 0.24 1.72 16 20 C -0.12 -2.44 5.38 -20.15 -0.11 -2.55 16 21 C -0.06 -0.81 9.79 22.57 0.22 -0.59 16 22 C -0.16 -2.45 9.96 22.32 0.22 -2.23 16 23 C 0.13 2.41 6.71 22.65 0.15 2.56 16 24 O -0.51 -8.18 13.49 -90.75 -1.22 -9.40 16 25 C -0.18 -4.18 9.97 22.32 0.22 -3.96 16 26 C -0.03 -0.89 6.93 22.57 0.16 -0.73 16 27 S 0.02 0.44 21.73 -56.49 -1.23 -0.79 16 28 C 0.12 2.63 6.64 86.35 0.57 3.20 16 29 C 0.05 1.52 5.06 86.39 0.44 1.96 16 30 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.01 0.46 7.97 -2.39 -0.02 0.44 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.02 0.68 7.28 -2.39 -0.02 0.66 16 34 H 0.09 2.94 7.99 -2.39 -0.02 2.93 16 35 H 0.09 2.77 7.34 -2.39 -0.02 2.76 16 36 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.41 2.13 9.06 -74.06 -0.67 1.46 16 41 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 42 H 0.10 3.14 6.22 -2.91 -0.02 3.12 16 43 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.11 1.89 6.68 -2.39 -0.02 1.88 16 45 H 0.03 0.96 6.49 -2.39 -0.02 0.94 16 46 H 0.10 2.89 8.11 -2.39 -0.02 2.87 16 Total: -1.00 -74.41 390.95 -2.87 -77.28 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.37 Total: 11.32 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.50 Total: 14.89 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -9.24 Total: -118.03 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.30 Total: -29.18 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -1.23 Total: -0.79 kcal Total: -74.41 -2.87 -77.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020457304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.714 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds