Wall clock time and date at job start Tue Mar 31 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86795 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47449 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47313 * 299.99741 * 3 2 1 6 6 H 1.48506 * 109.47384 * 59.99786 * 3 2 1 7 7 C 1.39892 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99792 * 197.78134 * 7 2 1 9 9 C 1.41219 * 119.99871 * 17.78848 * 7 2 1 10 10 C 1.40828 * 120.18145 * 24.71107 * 9 7 2 11 11 C 1.36437 * 119.81112 * 180.24830 * 10 9 7 12 12 C 1.39306 * 120.18299 * 359.46711 * 11 10 9 13 13 O 1.35674 * 119.81551 * 180.24948 * 12 11 10 14 14 C 1.42900 * 117.00000 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47151 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47164 * 55.00752 * 15 14 13 17 17 O 1.42903 * 109.47329 * 295.00404 * 15 14 13 18 18 C 1.52998 * 109.47050 * 175.00420 * 15 14 13 19 19 N 1.46501 * 109.47460 * 185.00213 * 18 15 14 20 20 N 1.40268 * 126.55726 * 269.69365 * 19 18 15 21 21 C 1.30449 * 107.70976 * 179.81367 * 20 19 18 22 22 C 1.47152 * 125.49004 * 180.11315 * 21 20 19 23 23 C 1.36240 * 125.95368 * 180.02562 * 22 21 20 24 24 C 1.40792 * 106.72146 * 179.85959 * 23 22 21 25 25 C 1.34815 * 107.06964 * 0.40440 * 24 23 22 26 26 O 1.34265 * 108.72612 * 359.75110 * 25 24 23 27 27 O 1.35143 * 109.01221 * 0.44425 * 21 20 19 28 28 C 1.34338 * 108.86687 * 359.70797 * 27 21 20 29 29 O 1.21696 * 126.23585 * 180.02562 * 28 27 21 30 30 C 1.39308 * 120.36894 * 0.26470 * 12 11 10 31 31 C 1.36436 * 120.18260 * 0.02562 * 30 12 11 32 32 H 0.97005 * 119.99704 * 0.02562 * 1 2 3 33 33 H 1.08009 * 120.09631 * 0.02562 * 10 9 7 34 34 H 1.08000 * 119.90363 * 179.73073 * 11 10 9 35 35 H 1.08997 * 109.47434 * 300.00209 * 14 13 12 36 36 H 1.09006 * 109.46569 * 60.00569 * 14 13 12 37 37 H 0.96697 * 113.99562 * 299.99650 * 17 15 14 38 38 H 1.09003 * 109.47222 * 305.00286 * 18 15 14 39 39 H 1.09001 * 109.47523 * 65.00330 * 18 15 14 40 40 H 1.08001 * 126.63775 * 0.02562 * 23 22 21 41 41 H 1.08001 * 126.46453 * 180.19324 * 24 23 22 42 42 H 1.08008 * 125.64001 * 179.74770 * 25 24 23 43 43 H 1.08002 * 119.91064 * 180.02562 * 30 12 11 44 44 H 1.07998 * 120.09628 * 180.02562 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0495 -1.2338 0.2862 9 6 1.3527 -2.4054 -0.3726 10 6 0.2239 -2.3603 -1.2134 11 6 -0.4067 -3.5180 -1.5650 12 6 0.0697 -4.7430 -1.1037 13 8 -0.5601 -5.8900 -1.4621 14 6 -0.0203 -7.1122 -0.9552 15 6 -0.8572 -8.2885 -1.4621 16 1 -0.9095 -8.2549 -2.5504 17 8 -2.1763 -8.2037 -0.9190 18 6 -0.2084 -9.6027 -1.0231 19 7 -0.9413 -10.7284 -1.6078 20 7 -2.0287 -11.4050 -1.0355 21 6 -2.3985 -12.3381 -1.8687 22 6 -3.5087 -13.2806 -1.6580 23 6 -3.9025 -14.2585 -2.5209 24 6 -4.9916 -14.9164 -1.9180 25 6 -5.2138 -14.3105 -0.7344 26 8 -4.3169 -13.3233 -0.5803 27 8 -1.5929 -12.3043 -2.9534 28 6 -0.6959 -11.3166 -2.7976 29 8 0.1785 -11.0081 -3.5858 30 6 1.1891 -4.7969 -0.2761 31 6 1.8277 -3.6481 0.0896 32 1 -0.4850 0.8401 -0.0004 33 1 -0.1438 -1.4116 -1.5760 34 1 -1.2751 -3.4847 -2.2062 35 1 1.0088 -7.2242 -1.2965 36 1 -0.0418 -7.0945 0.1345 37 1 -2.2060 -8.2279 0.0472 38 1 0.8272 -9.6278 -1.3625 39 1 -0.2363 -9.6764 0.0640 40 1 -3.4626 -14.4868 -3.4805 41 1 -5.5466 -15.7472 -2.3280 42 1 -5.9858 -14.5753 -0.0269 43 1 1.5524 -5.7508 0.0769 44 1 2.6956 -3.6915 0.7309 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040501847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:24 Heat of formation + Delta-G solvation = -37.949930 kcal Electronic energy + Delta-G solvation = -31581.121794 eV Core-core repulsion = 26854.792250 eV Total energy + Delta-G solvation = -4726.329545 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 372.125 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -43.87055 -43.16525 -39.23545 -38.46316 -37.80141 -36.47829 -35.88608 -33.79186 -33.34769 -33.15403 -31.40945 -30.00583 -29.36187 -28.94815 -26.83629 -24.83671 -24.44881 -23.51607 -22.55403 -21.92516 -21.48128 -20.76535 -20.64159 -19.14045 -18.23063 -17.95003 -17.38462 -17.19436 -16.78001 -16.71814 -16.66578 -16.27087 -15.99669 -15.51572 -15.26664 -14.74153 -14.28715 -13.99636 -13.90947 -13.74698 -13.68246 -13.58279 -13.29299 -12.95211 -12.69754 -12.51045 -12.47833 -12.31145 -12.17158 -11.83430 -11.47965 -11.32576 -11.22550 -11.12823 -10.89093 -10.71521 -10.65000 -10.41351 -10.01530 -9.88542 -9.82509 -9.36666 -9.04782 -8.80417 -7.66844 -7.06045 -6.74213 -4.27646 0.14128 0.94577 1.41753 1.54654 1.77896 2.10999 2.75049 2.89385 2.92828 3.08232 3.13271 3.18777 3.44089 3.72464 3.94270 4.05333 4.24569 4.26832 4.38078 4.59578 4.65029 4.72846 4.73583 4.91145 4.99017 5.02981 5.14284 5.17023 5.27865 5.45461 5.50020 5.64565 5.69652 5.81321 6.01841 6.19805 6.26536 6.69395 6.89933 6.95340 7.06406 7.08701 7.16250 7.42700 7.51589 7.53981 7.75880 7.98875 8.18138 8.41369 8.62743 8.88111 8.96183 10.20317 Molecular weight = 372.12amu Principal moments of inertia in cm(-1) A = 0.026389 B = 0.001417 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.803418 B =19749.351717 C =20293.297294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.133 4.133 11 C -0.117 4.117 12 C -0.011 4.011 13 O -0.315 6.315 14 C 0.042 3.958 15 C 0.091 3.909 16 H 0.112 0.888 17 O -0.541 6.541 18 C 0.125 3.875 19 N -0.441 5.441 20 N -0.224 5.224 21 C 0.311 3.689 22 C 0.033 3.967 23 C -0.128 4.128 24 C -0.218 4.218 25 C 0.005 3.995 26 O -0.147 6.147 27 O -0.257 6.257 28 C 0.610 3.390 29 O -0.472 6.472 30 C -0.167 4.167 31 C -0.199 4.199 32 H 0.280 0.720 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.376 0.624 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.218 0.782 43 H 0.093 0.907 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 -28.201 -0.300 29.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.153 4.153 11 C -0.136 4.136 12 C -0.054 4.054 13 O -0.231 6.231 14 C -0.035 4.035 15 C 0.031 3.969 16 H 0.130 0.870 17 O -0.346 6.346 18 C 0.005 3.995 19 N -0.272 5.272 20 N -0.054 5.054 21 C 0.088 3.912 22 C -0.019 4.019 23 C -0.150 4.150 24 C -0.237 4.237 25 C -0.065 4.065 26 O -0.042 6.042 27 O -0.154 6.154 28 C 0.361 3.639 29 O -0.351 6.351 30 C -0.186 4.186 31 C -0.218 4.218 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.223 0.777 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.182 0.818 41 H 0.180 0.820 42 H 0.234 0.766 43 H 0.111 0.889 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.964 -27.236 -0.602 28.679 hybrid contribution 0.837 0.323 0.071 0.900 sum -8.127 -26.913 -0.530 28.118 Atomic orbital electron populations 1.69843 1.07522 1.29084 1.35950 1.25886 0.94719 1.01263 0.92347 0.86288 0.80970 0.81079 0.78530 1.18461 1.19722 1.20067 1.19501 0.98055 0.91198 1.40509 0.90487 1.17611 0.91845 0.92153 0.89798 1.20983 0.98467 0.96298 0.99515 1.19837 1.00719 0.90205 1.02851 1.18599 0.96934 0.84639 1.05268 1.85887 1.54354 1.11892 1.70948 1.22955 0.97118 0.84971 0.98501 1.22356 0.83635 0.90236 1.00714 0.87007 1.86680 1.25857 1.96280 1.25739 1.22390 0.95150 0.81590 1.00376 1.49855 1.28578 1.31719 1.17079 1.77771 1.02043 1.05858 1.19684 1.21331 0.92405 0.94680 0.82759 1.17434 0.94792 0.99351 0.90301 1.22052 0.97528 0.94761 1.00676 1.21882 1.00871 1.04571 0.96350 1.24528 0.93921 0.88367 0.99727 1.84153 1.35896 1.46397 1.37711 1.85150 1.40085 1.50171 1.39951 1.19238 0.82155 0.78804 0.83655 1.91263 1.30939 1.65390 1.47546 1.20382 0.97839 0.97751 1.02629 1.20557 1.03129 0.92496 1.05650 0.90937 0.85655 0.88438 0.91860 0.92309 0.77708 0.86467 0.87059 0.81768 0.81996 0.76552 0.88891 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.67 10.96 55.54 0.61 -20.06 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.25 9.04 -37.83 -0.34 -12.59 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 9 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 10 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 11 C -0.12 -2.86 9.92 -39.83 -0.40 -3.26 16 12 C -0.01 -0.26 6.71 -38.79 -0.26 -0.52 16 13 O -0.32 -6.37 10.09 -23.57 -0.24 -6.60 16 14 C 0.04 0.61 4.37 37.16 0.16 0.77 16 15 C 0.09 1.13 3.49 -26.73 -0.09 1.04 16 16 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 17 O -0.54 -7.29 13.25 -40.08 -0.53 -7.82 16 18 C 0.12 1.18 6.04 -4.04 -0.02 1.15 16 19 N -0.44 -5.07 3.58 -65.26 -0.23 -5.30 16 20 N -0.22 -2.54 12.61 31.84 0.40 -2.13 16 21 C 0.31 3.24 8.15 -14.52 -0.12 3.13 16 22 C 0.03 0.27 7.24 -36.68 -0.27 0.01 16 23 C -0.13 -0.77 10.84 -39.34 -0.43 -1.20 16 24 C -0.22 -0.88 10.88 -39.83 -0.43 -1.31 16 25 C 0.00 0.02 12.08 29.52 0.36 0.38 16 26 O -0.15 -1.12 10.67 4.50 0.05 -1.08 16 27 O -0.26 -2.94 10.72 -20.95 -0.22 -3.17 16 28 C 0.61 7.94 9.24 54.15 0.50 8.44 16 29 O -0.47 -7.28 17.91 -19.01 -0.34 -7.62 16 30 C -0.17 -3.69 8.96 -39.83 -0.36 -4.05 16 31 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 32 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 33 H 0.13 3.36 6.17 -52.48 -0.32 3.04 16 34 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 35 H 0.06 0.84 7.65 -51.93 -0.40 0.45 16 36 H 0.06 0.76 7.65 -51.93 -0.40 0.37 16 37 H 0.38 3.73 9.04 45.56 0.41 4.14 16 38 H 0.12 0.95 8.12 -51.93 -0.42 0.53 16 39 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.16 0.24 8.06 -52.49 -0.42 -0.18 16 42 H 0.22 -0.04 8.06 -52.48 -0.42 -0.47 16 43 H 0.09 1.72 6.27 -52.49 -0.33 1.39 16 44 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -33.85 394.44 -6.66 -40.51 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -3.97 Total: 7.22 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -3.10 Total: -13.51 kcal Atomic # 7 Polarization: -28.28 SS G_CDS: 0.78 Total: -27.50 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.29 Total: -26.30 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.85 -6.66 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040501847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.560 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds