Wall clock time and date at job start Tue Mar 31 2020 05:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86795 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47449 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47313 * 299.99741 * 3 2 1 6 6 H 1.48506 * 109.47384 * 59.99786 * 3 2 1 7 7 C 1.39892 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99792 * 197.78134 * 7 2 1 9 9 C 1.41219 * 119.99871 * 17.78848 * 7 2 1 10 10 C 1.40828 * 120.18145 * 24.71107 * 9 7 2 11 11 C 1.36437 * 119.81112 * 180.24830 * 10 9 7 12 12 C 1.39306 * 120.18299 * 359.46711 * 11 10 9 13 13 O 1.35674 * 119.81551 * 180.24948 * 12 11 10 14 14 C 1.42900 * 117.00000 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47151 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47164 * 55.00752 * 15 14 13 17 17 O 1.42903 * 109.47329 * 295.00404 * 15 14 13 18 18 C 1.52998 * 109.47050 * 175.00420 * 15 14 13 19 19 N 1.46501 * 109.47460 * 185.00213 * 18 15 14 20 20 N 1.40268 * 126.55726 * 269.69365 * 19 18 15 21 21 C 1.30449 * 107.70976 * 179.81367 * 20 19 18 22 22 C 1.47152 * 125.49004 * 180.11315 * 21 20 19 23 23 C 1.36240 * 125.95368 * 180.02562 * 22 21 20 24 24 C 1.40792 * 106.72146 * 179.85959 * 23 22 21 25 25 C 1.34815 * 107.06964 * 0.40440 * 24 23 22 26 26 O 1.34265 * 108.72612 * 359.75110 * 25 24 23 27 27 O 1.35143 * 109.01221 * 0.44425 * 21 20 19 28 28 C 1.34338 * 108.86687 * 359.70797 * 27 21 20 29 29 O 1.21696 * 126.23585 * 180.02562 * 28 27 21 30 30 C 1.39308 * 120.36894 * 0.26470 * 12 11 10 31 31 C 1.36436 * 120.18260 * 0.02562 * 30 12 11 32 32 H 0.97005 * 119.99704 * 0.02562 * 1 2 3 33 33 H 1.08009 * 120.09631 * 0.02562 * 10 9 7 34 34 H 1.08000 * 119.90363 * 179.73073 * 11 10 9 35 35 H 1.08997 * 109.47434 * 300.00209 * 14 13 12 36 36 H 1.09006 * 109.46569 * 60.00569 * 14 13 12 37 37 H 0.96697 * 113.99562 * 299.99650 * 17 15 14 38 38 H 1.09003 * 109.47222 * 305.00286 * 18 15 14 39 39 H 1.09001 * 109.47523 * 65.00330 * 18 15 14 40 40 H 1.08001 * 126.63775 * 0.02562 * 23 22 21 41 41 H 1.08001 * 126.46453 * 180.19324 * 24 23 22 42 42 H 1.08008 * 125.64001 * 179.74770 * 25 24 23 43 43 H 1.08002 * 119.91064 * 180.02562 * 30 12 11 44 44 H 1.07998 * 120.09628 * 180.02562 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0495 -1.2338 0.2862 9 6 1.3527 -2.4054 -0.3726 10 6 0.2239 -2.3603 -1.2134 11 6 -0.4067 -3.5180 -1.5650 12 6 0.0697 -4.7430 -1.1037 13 8 -0.5601 -5.8900 -1.4621 14 6 -0.0203 -7.1122 -0.9552 15 6 -0.8572 -8.2885 -1.4621 16 1 -0.9095 -8.2549 -2.5504 17 8 -2.1763 -8.2037 -0.9190 18 6 -0.2084 -9.6027 -1.0231 19 7 -0.9413 -10.7284 -1.6078 20 7 -2.0287 -11.4050 -1.0355 21 6 -2.3985 -12.3381 -1.8687 22 6 -3.5087 -13.2806 -1.6580 23 6 -3.9025 -14.2585 -2.5209 24 6 -4.9916 -14.9164 -1.9180 25 6 -5.2138 -14.3105 -0.7344 26 8 -4.3169 -13.3233 -0.5803 27 8 -1.5929 -12.3043 -2.9534 28 6 -0.6959 -11.3166 -2.7976 29 8 0.1785 -11.0081 -3.5858 30 6 1.1891 -4.7969 -0.2761 31 6 1.8277 -3.6481 0.0896 32 1 -0.4850 0.8401 -0.0004 33 1 -0.1438 -1.4116 -1.5760 34 1 -1.2751 -3.4847 -2.2062 35 1 1.0088 -7.2242 -1.2965 36 1 -0.0418 -7.0945 0.1345 37 1 -2.2060 -8.2279 0.0472 38 1 0.8272 -9.6278 -1.3625 39 1 -0.2363 -9.6764 0.0640 40 1 -3.4626 -14.4868 -3.4805 41 1 -5.5466 -15.7472 -2.3280 42 1 -5.9858 -14.5753 -0.0269 43 1 1.5524 -5.7508 0.0769 44 1 2.6956 -3.6915 0.7309 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040501847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:23 Heat of formation + Delta-G solvation = -63.010465 kcal Electronic energy + Delta-G solvation = -31582.208501 eV Core-core repulsion = 26854.792250 eV Total energy + Delta-G solvation = -4727.416251 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 372.125 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.72012 -43.62594 -40.71187 -39.56779 -39.02593 -37.91695 -36.99832 -35.19070 -34.24871 -33.94818 -32.33357 -31.59779 -30.94733 -30.13787 -27.89107 -26.55053 -25.28755 -24.48516 -23.52604 -22.64055 -22.41209 -22.31452 -22.05557 -19.82294 -19.27000 -19.13067 -18.87086 -18.45335 -17.90876 -17.74208 -17.18952 -17.13704 -17.03397 -16.89432 -16.29599 -16.05157 -15.73548 -15.54539 -15.30334 -14.72545 -14.62808 -14.25043 -14.09522 -13.95888 -13.94837 -13.70651 -13.61863 -13.43918 -13.35814 -13.30215 -13.06028 -12.80877 -12.63852 -12.41534 -12.31296 -12.14416 -11.75267 -11.60719 -11.51441 -11.17950 -11.08702 -10.88929 -10.60179 -9.56417 -9.41581 -8.93252 -8.60162 -6.23303 -0.48984 0.13750 0.71350 0.80425 0.94020 1.02641 1.07091 1.39709 1.50551 1.54852 1.64489 2.22454 2.34163 2.42121 2.72144 2.72999 3.28518 3.47515 3.66992 3.69229 3.71914 3.84320 3.84653 3.93261 4.08532 4.24885 4.27391 4.30407 4.35189 4.42501 4.55726 4.63561 4.77542 4.87413 4.90762 4.93079 5.06468 5.21507 5.27928 5.39463 5.58172 5.63705 5.81622 5.87545 6.03747 6.05812 6.17189 6.25774 6.55771 6.68583 6.80388 6.94885 7.09344 8.36628 Molecular weight = 372.12amu Principal moments of inertia in cm(-1) A = 0.026389 B = 0.001417 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.803418 B =19749.351717 C =20293.297294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.153 4.153 11 C -0.136 4.136 12 C 0.000 4.000 13 O -0.333 6.333 14 C 0.033 3.967 15 C 0.102 3.898 16 H 0.087 0.913 17 O -0.562 6.562 18 C 0.127 3.873 19 N -0.438 5.438 20 N -0.245 5.245 21 C 0.320 3.680 22 C -0.011 4.011 23 C -0.115 4.115 24 C -0.224 4.224 25 C 0.021 3.979 26 O -0.168 6.168 27 O -0.258 6.258 28 C 0.604 3.396 29 O -0.505 6.505 30 C -0.162 4.162 31 C -0.206 4.206 32 H 0.287 0.713 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.391 0.609 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.175 0.825 41 H 0.191 0.809 42 H 0.259 0.741 43 H 0.136 0.864 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 -30.548 0.839 31.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.528 4.528 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.173 4.173 11 C -0.154 4.154 12 C -0.044 4.044 13 O -0.248 6.248 14 C -0.043 4.043 15 C 0.041 3.959 16 H 0.105 0.895 17 O -0.369 6.369 18 C 0.008 3.992 19 N -0.268 5.268 20 N -0.075 5.075 21 C 0.098 3.902 22 C -0.062 4.062 23 C -0.137 4.137 24 C -0.242 4.242 25 C -0.048 4.048 26 O -0.063 6.063 27 O -0.155 6.155 28 C 0.356 3.644 29 O -0.388 6.388 30 C -0.181 4.181 31 C -0.226 4.226 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.240 0.760 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.192 0.808 41 H 0.209 0.791 42 H 0.275 0.725 43 H 0.154 0.846 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.455 -29.613 0.563 31.091 hybrid contribution 0.754 0.715 -0.284 1.077 sum -8.701 -28.899 0.280 30.182 Atomic orbital electron populations 1.69902 1.09010 1.30384 1.36622 1.26740 0.95456 1.04519 0.91352 0.85171 0.79470 0.76317 0.78811 1.18066 1.19136 1.19130 1.19748 0.98315 0.92362 1.42370 0.90487 1.17974 0.92614 0.93528 0.90731 1.20878 0.99411 0.96282 1.00701 1.19994 1.01120 0.90877 1.03448 1.18655 0.96572 0.85208 1.03934 1.85870 1.54789 1.12778 1.71410 1.23347 0.98172 0.82867 0.99938 1.22180 0.83300 0.91055 0.99315 0.89501 1.86646 1.26565 1.96394 1.27298 1.22519 0.95180 0.79387 1.02133 1.49950 1.28634 1.31722 1.16524 1.77788 1.02649 1.06899 1.20131 1.21853 0.92173 0.94420 0.81785 1.17470 0.95968 1.00839 0.91939 1.22424 0.97322 0.93481 1.00500 1.22272 1.00395 1.05266 0.96287 1.25501 0.92832 0.86263 1.00210 1.84147 1.36580 1.47790 1.37810 1.85110 1.40057 1.49789 1.40545 1.19329 0.82119 0.79075 0.83861 1.91225 1.32392 1.66545 1.48611 1.20731 0.96896 0.98927 1.01523 1.20829 1.03628 0.92484 1.05637 0.90256 0.87446 0.87919 0.90183 0.89961 0.75958 0.84900 0.83870 0.80752 0.79147 0.72545 0.84616 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.41 10.96 21.82 0.24 -44.17 16 2 C 0.03 1.69 5.13 85.23 0.44 2.13 16 3 Si 0.98 38.68 29.59 68.60 2.03 40.71 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.50 -27.05 9.04 23.40 0.21 -26.84 16 8 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 9 C 0.05 2.93 5.57 -21.28 -0.12 2.81 16 10 C -0.15 -8.34 8.64 22.48 0.19 -8.14 16 11 C -0.14 -6.77 9.92 22.11 0.22 -6.55 16 12 C 0.00 0.00 6.71 22.78 0.15 0.16 16 13 O -0.33 -13.05 10.09 -85.28 -0.86 -13.91 16 14 C 0.03 0.87 4.37 71.98 0.31 1.19 16 15 C 0.10 2.41 3.49 30.60 0.11 2.52 16 16 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 17 O -0.56 -14.56 13.25 -144.35 -1.91 -16.47 16 18 C 0.13 2.15 6.04 86.38 0.52 2.68 16 19 N -0.44 -9.78 3.58 -590.66 -2.12 -11.90 16 20 N -0.25 -5.44 12.61 -167.23 -2.11 -7.55 16 21 C 0.32 6.62 8.15 87.24 0.71 7.33 16 22 C -0.01 -0.18 7.24 24.15 0.17 0.00 16 23 C -0.11 -1.20 10.84 22.43 0.24 -0.95 16 24 C -0.22 -1.12 10.88 22.11 0.24 -0.88 16 25 C 0.02 0.10 12.08 67.03 0.81 0.91 16 26 O -0.17 -2.31 10.67 -6.80 -0.07 -2.39 16 27 O -0.26 -5.99 10.72 11.84 0.13 -5.86 16 28 C 0.60 15.87 9.24 129.76 1.20 17.07 16 29 O -0.51 -15.90 17.91 18.80 0.34 -15.57 16 30 C -0.16 -6.87 8.96 22.11 0.20 -6.68 16 31 C -0.21 -9.93 9.74 22.48 0.22 -9.71 16 32 H 0.29 13.83 8.30 -92.70 -0.77 13.06 16 33 H 0.11 6.10 6.17 -2.91 -0.02 6.08 16 34 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 35 H 0.08 1.88 7.65 -2.39 -0.02 1.86 16 36 H 0.08 1.82 7.65 -2.38 -0.02 1.81 16 37 H 0.39 7.08 9.04 -74.06 -0.67 6.41 16 38 H 0.13 1.87 8.12 -2.39 -0.02 1.85 16 39 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.19 -0.20 8.06 -2.91 -0.02 -0.23 16 42 H 0.26 -1.23 8.06 -2.91 -0.02 -1.25 16 43 H 0.14 4.50 6.27 -2.91 -0.02 4.48 16 44 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -76.99 394.44 1.91 -75.09 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.41 Total: 24.98 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 5.84 Total: -22.97 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -3.99 Total: -63.62 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -2.38 Total: -54.19 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -76.99 1.91 -75.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040501847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.076 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds