Wall clock time and date at job start Tue Mar 31 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34949 * 126.03709 * 2 1 4 4 C 1.35315 * 107.74986 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.04449 * 180.02562 * 4 3 2 6 6 H 1.09002 * 110.72583 * 16.89251 * 5 4 3 7 7 C 1.54941 * 110.66465 * 253.80367 * 5 4 3 8 8 C 1.54587 * 102.92257 * 204.14956 * 7 5 4 9 9 C 1.53996 * 105.13997 * 21.95312 * 8 7 5 10 10 N 1.47893 * 107.05764 * 1.22737 * 9 8 7 11 11 C 1.46895 * 111.00168 * 214.15392 * 10 9 8 12 12 C 1.50700 * 109.47156 * 294.28292 * 11 10 9 13 13 O 1.21276 * 120.00012 * 353.79720 * 12 11 10 14 14 N 1.34782 * 119.99894 * 173.80548 * 12 11 10 15 15 C 1.46498 * 120.00192 * 359.97438 * 14 12 11 16 16 C 1.50693 * 109.47637 * 270.00538 * 15 14 12 17 17 H 1.08011 * 119.99803 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00414 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99789 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47418 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47096 * 120.00040 * 20 18 16 23 23 H 1.48510 * 109.46606 * 239.99933 * 20 18 16 24 24 C 1.46501 * 119.99748 * 179.97438 * 14 12 11 25 25 C 1.50693 * 109.47247 * 269.99612 * 24 14 12 26 26 C 1.34513 * 125.78839 * 90.02608 * 25 24 14 27 27 C 1.41385 * 106.84042 * 180.02562 * 26 25 24 28 28 C 1.34506 * 106.84080 * 359.97438 * 27 26 25 29 29 O 1.34304 * 125.79026 * 270.02736 * 25 24 14 30 30 C 1.39867 * 107.91843 * 0.25500 * 4 3 2 31 31 N 1.30841 * 108.20362 * 359.56274 * 30 4 3 32 32 H 1.09004 * 109.46638 * 90.00394 * 1 2 3 33 33 H 1.08997 * 109.47488 * 210.00366 * 1 2 3 34 34 H 1.09001 * 109.47701 * 330.00640 * 1 2 3 35 35 H 1.08007 * 126.12604 * 359.97438 * 3 2 1 36 36 H 1.09002 * 110.72480 * 85.78495 * 7 5 4 37 37 H 1.09005 * 110.87590 * 322.57544 * 7 5 4 38 38 H 1.09002 * 110.31075 * 263.04136 * 8 7 5 39 39 H 1.09005 * 110.39808 * 140.91710 * 8 7 5 40 40 H 1.08997 * 109.91543 * 241.87242 * 9 8 7 41 41 H 1.09002 * 110.07785 * 120.67109 * 9 8 7 42 42 H 1.08997 * 109.47788 * 174.27921 * 11 10 9 43 43 H 1.09004 * 109.47323 * 54.27900 * 11 10 9 44 44 H 1.09000 * 109.46806 * 30.01064 * 15 14 12 45 45 H 1.09001 * 109.46879 * 150.00068 * 15 14 12 46 46 H 0.96998 * 120.00335 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.46998 * 149.99717 * 24 14 12 48 48 H 1.09001 * 109.47095 * 29.99878 * 24 14 12 49 49 H 1.08005 * 126.58060 * 0.02562 * 26 25 24 50 50 H 1.08005 * 126.57649 * 180.02562 * 27 26 25 51 51 H 1.07997 * 125.79030 * 180.02562 * 28 27 26 52 52 H 1.07998 * 125.90285 * 179.73589 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6667 0.0006 5 6 4.7680 1.5453 0.0013 6 1 4.5124 2.5627 0.2976 7 6 5.4487 1.5359 -1.3905 8 6 6.9116 1.9128 -1.0625 9 6 7.0942 1.5588 0.4251 10 7 5.8142 0.9862 0.8951 11 6 5.5584 1.3479 2.2956 12 6 6.5942 0.7012 3.1787 13 8 7.3909 -0.0813 2.7059 14 7 6.6350 0.9924 4.4941 15 6 5.6727 1.9380 5.0652 16 6 6.2379 3.3332 4.9962 17 1 7.2164 3.4990 4.5698 18 6 5.5065 4.3980 5.4781 19 7 4.3154 4.1960 5.9977 20 14 6.2069 6.1276 5.3918 21 1 7.5533 6.0858 4.7671 22 1 5.3090 6.9851 4.5772 23 1 6.3152 6.6867 6.7634 24 6 7.6416 0.3632 5.3527 25 6 7.0914 -0.9234 5.9120 26 6 7.1993 -2.1378 5.3438 27 6 6.5444 -3.0511 6.2017 28 6 6.0760 -2.3402 7.2431 29 8 6.4102 -1.0520 7.0623 30 6 3.5347 -0.7320 -0.0050 31 7 2.2892 -1.1327 0.0007 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3634 0.8900 0.5137 35 1 1.9281 2.1194 -0.0004 36 1 4.9963 2.2799 -2.0462 37 1 5.3975 0.5447 -1.8412 38 1 7.0719 2.9794 -1.2199 39 1 7.6002 1.3327 -1.6768 40 1 7.3302 2.4578 0.9944 41 1 7.8932 0.8262 0.5400 42 1 4.5664 1.0012 2.5852 43 1 5.6114 2.4310 2.4067 44 1 4.7417 1.8947 4.5001 45 1 5.4790 1.6755 6.1053 46 1 3.8006 4.9451 6.3365 47 1 7.8931 1.0372 6.1716 48 1 8.5369 0.1519 4.7681 49 1 7.6918 -2.3707 4.4112 50 1 6.4409 -4.1155 6.0503 51 1 5.5248 -2.7378 8.0823 52 1 4.4054 -1.3709 -0.0100 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071799337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:06 Heat of formation + Delta-G solvation = 77.458437 kcal Electronic energy + Delta-G solvation = -35016.026643 eV Core-core repulsion = 30598.660521 eV Total energy + Delta-G solvation = -4417.366122 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 372.195 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.12408 -41.11023 -39.39572 -37.94264 -35.05203 -33.22382 -32.90383 -32.46432 -32.00211 -30.92916 -30.28721 -28.15974 -27.25846 -26.76943 -25.92020 -24.55974 -22.93190 -21.77458 -21.29141 -20.91210 -20.76981 -20.16155 -19.52087 -18.34775 -17.12539 -16.89447 -16.51718 -16.10481 -15.82385 -15.69462 -15.34921 -15.17737 -14.66728 -14.61030 -14.38453 -14.13556 -13.87150 -13.63505 -13.22633 -12.97481 -12.81721 -12.57555 -12.55115 -12.42822 -12.38450 -12.35543 -12.19710 -11.93377 -11.81253 -11.57584 -11.33676 -11.17286 -10.99358 -10.95260 -10.90414 -10.75205 -10.50822 -10.28556 -10.23091 -9.80994 -9.53072 -9.26450 -9.06469 -8.61598 -8.22280 -8.15268 -7.96197 -7.79517 -6.22361 -4.30356 1.99930 2.08342 2.62322 2.95951 2.98160 3.17316 3.26271 3.28224 3.30866 3.57918 3.87906 4.27230 4.40522 4.65216 4.93166 4.94594 4.95489 5.04614 5.10128 5.12750 5.18970 5.26665 5.31307 5.36553 5.40454 5.45746 5.52511 5.64260 5.74314 5.83501 5.86529 5.98082 5.98863 6.01758 6.07736 6.12074 6.17034 6.18360 6.27739 6.36183 6.39246 6.48135 6.49697 6.70253 6.83590 6.89855 7.07002 7.12647 7.28887 7.32137 7.50886 7.57624 7.72126 7.86691 8.00999 8.29726 8.75795 9.03210 9.37824 10.84397 Molecular weight = 372.19amu Principal moments of inertia in cm(-1) A = 0.005814 B = 0.003804 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4814.746662 B = 7358.867845 C = 9166.816875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.382 5.382 3 C 0.055 3.945 4 C -0.215 4.215 5 C 0.141 3.859 6 H 0.059 0.941 7 C -0.109 4.109 8 C -0.131 4.131 9 C 0.041 3.959 10 N -0.490 5.490 11 C 0.038 3.962 12 C 0.525 3.475 13 O -0.551 6.551 14 N -0.595 5.595 15 C 0.238 3.762 16 C -0.538 4.538 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.889 5.889 20 Si 0.895 3.105 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.199 3.801 25 C -0.017 4.017 26 C -0.197 4.197 27 C -0.219 4.219 28 C -0.050 4.050 29 O -0.170 6.170 30 C 0.081 3.919 31 N -0.308 5.308 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.170 0.830 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.265 0.735 47 H 0.094 0.906 48 H 0.104 0.896 49 H 0.148 0.852 50 H 0.142 0.858 51 H 0.196 0.804 52 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 -6.261 -9.814 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.164 5.164 3 C -0.092 4.092 4 C -0.227 4.227 5 C 0.032 3.968 6 H 0.077 0.923 7 C -0.147 4.147 8 C -0.169 4.169 9 C -0.087 4.087 10 N -0.215 5.215 11 C -0.093 4.093 12 C 0.313 3.687 13 O -0.430 6.430 14 N -0.327 5.327 15 C 0.119 3.881 16 C -0.577 4.577 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.208 1.208 24 C 0.075 3.925 25 C -0.068 4.068 26 C -0.217 4.217 27 C -0.238 4.238 28 C -0.119 4.119 29 O -0.066 6.066 30 C -0.105 4.105 31 N -0.130 5.130 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.188 0.812 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.112 0.888 48 H 0.122 0.878 49 H 0.165 0.835 50 H 0.160 0.840 51 H 0.213 0.787 52 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.719 -7.877 -9.775 13.093 hybrid contribution 0.467 2.444 0.356 2.513 sum -3.253 -5.433 -9.419 11.350 Atomic orbital electron populations 1.21778 0.74644 1.04385 1.02876 1.48381 1.06384 1.03944 1.57725 1.22265 0.90956 0.93288 1.02680 1.19759 0.93056 0.94178 1.15682 1.20876 0.88860 0.94374 0.92689 0.92321 1.22446 0.94570 1.01939 0.95762 1.22425 0.96985 1.00870 0.96658 1.22840 0.93399 0.98633 0.93825 1.64406 1.01285 1.55112 1.00659 1.22084 0.98857 1.00262 0.88058 1.20324 0.84921 0.81197 0.82285 1.90570 1.41917 1.36129 1.74405 1.48276 1.33978 1.43470 1.06992 1.19449 0.87134 0.86484 0.95077 1.21518 1.03650 0.91355 1.41155 0.91953 1.24939 0.94737 0.99303 0.94728 1.69940 1.11093 1.31837 1.39843 0.86489 0.79272 0.84069 0.77953 1.19597 1.20869 1.20796 1.19637 0.91024 0.87599 0.94230 1.23256 0.99125 0.98216 0.86233 1.21656 1.05961 0.92068 1.02022 1.21791 1.04880 1.00630 0.96525 1.23937 1.04700 0.81281 1.01936 1.84078 1.56946 1.28407 1.37133 1.23738 0.94562 0.94693 0.97505 1.77366 1.01922 1.08118 1.25548 0.91160 0.89517 0.89648 0.81246 0.91473 0.90752 0.91845 0.91262 0.93943 0.89316 0.88589 0.90392 0.94570 0.94481 0.92569 0.88783 0.87798 0.83457 0.84021 0.78695 0.79880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.87 11.47 59.85 0.69 1.55 16 2 N -0.38 -4.91 4.01 -68.16 -0.27 -5.18 16 3 C 0.05 0.68 11.40 -17.22 -0.20 0.49 16 4 C -0.21 -3.01 4.81 -105.06 -0.51 -3.51 16 5 C 0.14 1.95 2.73 -66.94 -0.18 1.77 16 6 H 0.06 0.82 8.02 -51.93 -0.42 0.40 16 7 C -0.11 -1.27 6.48 -24.87 -0.16 -1.43 16 8 C -0.13 -1.56 6.93 -25.38 -0.18 -1.74 16 9 C 0.04 0.62 5.66 -2.76 -0.02 0.61 16 10 N -0.49 -7.94 4.48 -225.43 -1.01 -8.95 16 11 C 0.04 0.71 3.63 -4.98 -0.02 0.69 16 12 C 0.52 10.75 7.35 -10.98 -0.08 10.67 16 13 O -0.55 -11.78 14.61 5.56 0.08 -11.70 16 14 N -0.60 -12.49 2.44 -176.44 -0.43 -12.92 16 15 C 0.24 5.65 4.89 -5.20 -0.03 5.62 16 16 C -0.54 -13.59 9.06 -34.44 -0.31 -13.90 16 17 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 18 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -24.16 13.29 55.43 0.74 -23.42 16 20 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.20 3.76 5.94 -5.20 -0.03 3.73 16 25 C -0.02 -0.31 6.90 -35.63 -0.25 -0.56 16 26 C -0.20 -3.45 10.81 -39.70 -0.43 -3.88 16 27 C -0.22 -3.34 10.91 -39.70 -0.43 -3.78 16 28 C -0.05 -0.76 12.09 29.41 0.36 -0.40 16 29 O -0.17 -3.15 10.65 5.70 0.06 -3.09 16 30 C 0.08 1.23 11.72 -17.36 -0.20 1.02 16 31 N -0.31 -4.76 12.58 30.62 0.39 -4.38 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.17 1.62 8.06 -52.48 -0.42 1.19 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.69 7.64 -51.93 -0.40 0.30 16 41 H 0.09 1.48 7.32 -51.93 -0.38 1.10 16 42 H 0.10 1.87 7.47 -51.93 -0.39 1.48 16 43 H 0.08 1.55 7.42 -51.93 -0.39 1.16 16 44 H 0.04 0.90 6.61 -51.93 -0.34 0.55 16 45 H 0.04 0.95 8.07 -51.93 -0.42 0.54 16 46 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 47 H 0.09 1.74 8.07 -51.93 -0.42 1.32 16 48 H 0.10 1.85 7.42 -51.93 -0.39 1.47 16 49 H 0.15 2.57 8.06 -52.48 -0.42 2.15 16 50 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 51 H 0.20 2.09 8.06 -52.49 -0.42 1.67 16 52 H 0.18 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 432.54 15.07 6.52 6.52 Total: -1.00 -31.46 432.54 -9.17 -40.63 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -8.15 Total: 8.91 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.07 Total: -1.43 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.59 Total: -54.85 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.14 Total: -14.79 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 6.52 Total: 6.52 kcal Total: -31.46 -9.17 -40.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071799337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.090 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds