Wall clock time and date at job start Tue Mar 31 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34949 * 126.03709 * 2 1 4 4 C 1.35315 * 107.74986 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.04449 * 180.02562 * 4 3 2 6 6 H 1.09002 * 110.72583 * 16.89251 * 5 4 3 7 7 C 1.54941 * 110.66465 * 253.80367 * 5 4 3 8 8 C 1.54587 * 102.92257 * 204.14956 * 7 5 4 9 9 C 1.53996 * 105.13997 * 21.95312 * 8 7 5 10 10 N 1.47893 * 107.05764 * 1.22737 * 9 8 7 11 11 C 1.46895 * 111.00168 * 214.15392 * 10 9 8 12 12 C 1.50700 * 109.47156 * 294.28292 * 11 10 9 13 13 O 1.21276 * 120.00012 * 353.79720 * 12 11 10 14 14 N 1.34782 * 119.99894 * 173.80548 * 12 11 10 15 15 C 1.46498 * 120.00192 * 359.97438 * 14 12 11 16 16 C 1.50693 * 109.47637 * 270.00538 * 15 14 12 17 17 H 1.08011 * 119.99803 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00414 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99789 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47418 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47096 * 120.00040 * 20 18 16 23 23 H 1.48510 * 109.46606 * 239.99933 * 20 18 16 24 24 C 1.46501 * 119.99748 * 179.97438 * 14 12 11 25 25 C 1.50693 * 109.47247 * 269.99612 * 24 14 12 26 26 C 1.34513 * 125.78839 * 90.02608 * 25 24 14 27 27 C 1.41385 * 106.84042 * 180.02562 * 26 25 24 28 28 C 1.34506 * 106.84080 * 359.97438 * 27 26 25 29 29 O 1.34304 * 125.79026 * 270.02736 * 25 24 14 30 30 C 1.39867 * 107.91843 * 0.25500 * 4 3 2 31 31 N 1.30841 * 108.20362 * 359.56274 * 30 4 3 32 32 H 1.09004 * 109.46638 * 90.00394 * 1 2 3 33 33 H 1.08997 * 109.47488 * 210.00366 * 1 2 3 34 34 H 1.09001 * 109.47701 * 330.00640 * 1 2 3 35 35 H 1.08007 * 126.12604 * 359.97438 * 3 2 1 36 36 H 1.09002 * 110.72480 * 85.78495 * 7 5 4 37 37 H 1.09005 * 110.87590 * 322.57544 * 7 5 4 38 38 H 1.09002 * 110.31075 * 263.04136 * 8 7 5 39 39 H 1.09005 * 110.39808 * 140.91710 * 8 7 5 40 40 H 1.08997 * 109.91543 * 241.87242 * 9 8 7 41 41 H 1.09002 * 110.07785 * 120.67109 * 9 8 7 42 42 H 1.08997 * 109.47788 * 174.27921 * 11 10 9 43 43 H 1.09004 * 109.47323 * 54.27900 * 11 10 9 44 44 H 1.09000 * 109.46806 * 30.01064 * 15 14 12 45 45 H 1.09001 * 109.46879 * 150.00068 * 15 14 12 46 46 H 0.96998 * 120.00335 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.46998 * 149.99717 * 24 14 12 48 48 H 1.09001 * 109.47095 * 29.99878 * 24 14 12 49 49 H 1.08005 * 126.58060 * 0.02562 * 26 25 24 50 50 H 1.08005 * 126.57649 * 180.02562 * 27 26 25 51 51 H 1.07997 * 125.79030 * 180.02562 * 28 27 26 52 52 H 1.07998 * 125.90285 * 179.73589 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6667 0.0006 5 6 4.7680 1.5453 0.0013 6 1 4.5124 2.5627 0.2976 7 6 5.4487 1.5359 -1.3905 8 6 6.9116 1.9128 -1.0625 9 6 7.0942 1.5588 0.4251 10 7 5.8142 0.9862 0.8951 11 6 5.5584 1.3479 2.2956 12 6 6.5942 0.7012 3.1787 13 8 7.3909 -0.0813 2.7059 14 7 6.6350 0.9924 4.4941 15 6 5.6727 1.9380 5.0652 16 6 6.2379 3.3332 4.9962 17 1 7.2164 3.4990 4.5698 18 6 5.5065 4.3980 5.4781 19 7 4.3154 4.1960 5.9977 20 14 6.2069 6.1276 5.3918 21 1 7.5533 6.0858 4.7671 22 1 5.3090 6.9851 4.5772 23 1 6.3152 6.6867 6.7634 24 6 7.6416 0.3632 5.3527 25 6 7.0914 -0.9234 5.9120 26 6 7.1993 -2.1378 5.3438 27 6 6.5444 -3.0511 6.2017 28 6 6.0760 -2.3402 7.2431 29 8 6.4102 -1.0520 7.0623 30 6 3.5347 -0.7320 -0.0050 31 7 2.2892 -1.1327 0.0007 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3634 0.8900 0.5137 35 1 1.9281 2.1194 -0.0004 36 1 4.9963 2.2799 -2.0462 37 1 5.3975 0.5447 -1.8412 38 1 7.0719 2.9794 -1.2199 39 1 7.6002 1.3327 -1.6768 40 1 7.3302 2.4578 0.9944 41 1 7.8932 0.8262 0.5400 42 1 4.5664 1.0012 2.5852 43 1 5.6114 2.4310 2.4067 44 1 4.7417 1.8947 4.5001 45 1 5.4790 1.6755 6.1053 46 1 3.8006 4.9451 6.3365 47 1 7.8931 1.0372 6.1716 48 1 8.5369 0.1519 4.7681 49 1 7.6918 -2.3707 4.4112 50 1 6.4409 -4.1155 6.0503 51 1 5.5248 -2.7378 8.0823 52 1 4.4054 -1.3709 -0.0100 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071799337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:05 Heat of formation + Delta-G solvation = 59.270879 kcal Electronic energy + Delta-G solvation = -35016.815314 eV Core-core repulsion = 30598.660521 eV Total energy + Delta-G solvation = -4418.154794 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 372.195 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.46774 -42.14915 -40.92210 -39.24674 -36.79446 -34.73508 -34.14304 -33.91209 -33.31067 -32.00119 -31.72963 -29.13497 -29.11297 -28.16061 -26.88132 -26.03152 -24.81828 -22.90226 -22.60900 -21.97439 -21.87232 -21.46568 -20.61374 -19.94100 -18.80865 -18.28207 -17.92357 -17.50201 -17.43274 -16.99644 -16.51651 -16.33563 -16.22560 -15.99423 -15.87127 -15.25919 -15.17551 -14.84454 -14.54885 -14.36049 -14.14098 -13.79612 -13.71652 -13.65686 -13.61403 -13.57969 -13.52587 -13.46489 -13.14252 -12.95784 -12.85645 -12.72714 -12.52582 -12.32804 -12.23884 -12.09239 -11.99006 -11.72255 -11.59156 -11.30690 -10.87488 -10.74571 -10.57030 -10.28846 -9.66835 -9.38952 -9.28895 -9.23331 -8.21584 -6.37051 0.73268 0.99615 1.40198 1.43610 1.54138 1.65348 1.72662 1.75802 1.87671 2.16210 2.34807 2.43355 3.08322 3.12056 3.66299 3.77089 3.83422 3.87976 3.98168 4.07200 4.15173 4.17238 4.19914 4.36294 4.38240 4.40168 4.45327 4.47036 4.52712 4.56419 4.58173 4.70661 4.75220 4.82401 4.87088 4.90928 4.98786 5.03719 5.05298 5.07692 5.14167 5.20537 5.22250 5.30775 5.41208 5.58648 5.62491 5.74033 5.75523 6.01241 6.02172 6.06954 6.22449 6.23907 6.53122 6.78345 6.80915 7.29674 7.39714 8.84969 Molecular weight = 372.19amu Principal moments of inertia in cm(-1) A = 0.005814 B = 0.003804 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4814.746662 B = 7358.867845 C = 9166.816875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.381 5.381 3 C 0.061 3.939 4 C -0.233 4.233 5 C 0.141 3.859 6 H 0.059 0.941 7 C -0.099 4.099 8 C -0.122 4.122 9 C 0.040 3.960 10 N -0.497 5.497 11 C 0.054 3.946 12 C 0.521 3.479 13 O -0.561 6.561 14 N -0.599 5.599 15 C 0.259 3.741 16 C -0.544 4.544 17 H 0.057 0.943 18 C 0.023 3.977 19 N -0.920 5.920 20 Si 0.958 3.042 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.280 1.280 24 C 0.199 3.801 25 C -0.045 4.045 26 C -0.200 4.200 27 C -0.225 4.225 28 C -0.042 4.042 29 O -0.194 6.194 30 C 0.067 3.933 31 N -0.340 5.340 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.202 0.798 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.027 0.973 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.022 0.978 45 H 0.012 0.988 46 H 0.268 0.732 47 H 0.091 0.909 48 H 0.110 0.890 49 H 0.143 0.857 50 H 0.172 0.828 51 H 0.240 0.760 52 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 -5.651 -10.738 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.164 5.164 3 C -0.087 4.087 4 C -0.245 4.245 5 C 0.033 3.967 6 H 0.077 0.923 7 C -0.138 4.138 8 C -0.160 4.160 9 C -0.087 4.087 10 N -0.222 5.222 11 C -0.077 4.077 12 C 0.310 3.690 13 O -0.441 6.441 14 N -0.330 5.330 15 C 0.138 3.862 16 C -0.582 4.582 17 H 0.075 0.925 18 C -0.177 4.177 19 N -0.559 5.559 20 Si 0.783 3.217 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.206 1.206 24 C 0.076 3.924 25 C -0.096 4.096 26 C -0.220 4.220 27 C -0.244 4.244 28 C -0.109 4.109 29 O -0.090 6.090 30 C -0.118 4.118 31 N -0.162 5.162 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.219 0.781 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.040 0.960 45 H 0.030 0.970 46 H 0.077 0.923 47 H 0.109 0.891 48 H 0.128 0.872 49 H 0.161 0.839 50 H 0.190 0.810 51 H 0.256 0.744 52 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.504 -7.291 -10.714 13.720 hybrid contribution 0.647 2.146 0.690 2.345 sum -3.857 -5.145 -10.024 11.910 Atomic orbital electron populations 1.22152 0.72160 1.05581 1.04632 1.48755 1.07822 1.03317 1.56465 1.22753 0.90442 0.94514 1.00944 1.19845 0.93870 0.93722 1.17018 1.20957 0.88416 0.94104 0.93254 0.92274 1.22424 0.94027 1.02644 0.94657 1.22393 0.97581 1.02057 0.93959 1.22804 0.92458 0.97247 0.96230 1.64410 1.02600 1.55644 0.99538 1.21834 0.97484 0.98843 0.89544 1.20651 0.85115 0.81041 0.82209 1.90553 1.42436 1.36606 1.74461 1.48260 1.33944 1.43328 1.07511 1.19005 0.87183 0.86627 0.93340 1.21655 1.03417 0.92152 1.40998 0.92452 1.25664 0.94914 1.02907 0.94227 1.70038 1.12225 1.33063 1.40605 0.85506 0.78704 0.79547 0.77941 1.19256 1.20056 1.20585 1.19655 0.90767 0.88015 0.93974 1.23093 1.01023 0.98236 0.87227 1.21803 1.05711 0.92437 1.02019 1.22142 1.04410 1.01916 0.95937 1.24859 1.03402 0.79844 1.02823 1.84060 1.57368 1.30422 1.37151 1.23712 0.94506 0.95346 0.98230 1.77283 1.02373 1.09812 1.26734 0.89093 0.89589 0.87238 0.78112 0.89019 0.90972 0.90302 0.89929 0.95473 0.91202 0.89783 0.91899 0.95994 0.96975 0.92300 0.89065 0.87190 0.83897 0.81010 0.74439 0.80669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 11.47 127.77 1.47 2.83 16 2 N -0.38 -9.31 4.01 -369.56 -1.48 -10.79 16 3 C 0.06 1.43 11.40 83.54 0.95 2.38 16 4 C -0.23 -6.40 4.81 -20.15 -0.10 -6.50 16 5 C 0.14 3.82 2.73 44.52 0.12 3.94 16 6 H 0.06 1.60 8.02 -2.39 -0.02 1.58 16 7 C -0.10 -2.13 6.48 31.80 0.21 -1.93 16 8 C -0.12 -2.71 6.93 31.47 0.22 -2.49 16 9 C 0.04 1.25 5.66 86.45 0.49 1.74 16 10 N -0.50 -16.44 4.48 -867.14 -3.89 -20.33 16 11 C 0.05 2.10 3.63 85.56 0.31 2.41 16 12 C 0.52 22.24 7.35 87.66 0.64 22.88 16 13 O -0.56 -24.81 14.61 -3.02 -0.04 -24.85 16 14 N -0.60 -26.22 2.44 -830.52 -2.03 -28.24 16 15 C 0.26 12.81 4.89 85.63 0.42 13.23 16 16 C -0.54 -28.07 9.06 25.60 0.23 -27.84 16 17 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 18 C 0.02 1.21 5.46 84.66 0.46 1.68 16 19 N -0.92 -50.52 13.29 21.45 0.28 -50.24 16 20 Si 0.96 40.96 29.54 68.60 2.03 42.98 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 C 0.20 7.84 5.94 85.63 0.51 8.35 16 25 C -0.04 -1.71 6.90 24.83 0.17 -1.54 16 26 C -0.20 -7.03 10.81 22.19 0.24 -6.79 16 27 C -0.23 -6.55 10.91 22.19 0.24 -6.31 16 28 C -0.04 -1.20 12.09 66.97 0.81 -0.39 16 29 O -0.19 -7.21 10.65 -2.52 -0.03 -7.24 16 30 C 0.07 2.06 11.72 85.23 1.00 3.06 16 31 N -0.34 -10.50 12.58 -57.02 -0.72 -11.22 16 32 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.20 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.60 8.05 -2.38 -0.02 1.58 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.03 0.91 7.64 -2.39 -0.02 0.89 16 41 H 0.07 2.40 7.32 -2.39 -0.02 2.38 16 42 H 0.08 3.44 7.47 -2.39 -0.02 3.42 16 43 H 0.06 2.61 7.42 -2.38 -0.02 2.59 16 44 H 0.02 1.14 6.61 -2.39 -0.02 1.13 16 45 H 0.01 0.66 8.07 -2.39 -0.02 0.64 16 46 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 47 H 0.09 3.55 8.07 -2.39 -0.02 3.53 16 48 H 0.11 4.10 7.42 -2.39 -0.02 4.08 16 49 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 50 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 51 H 0.24 4.35 8.06 -2.91 -0.02 4.32 16 52 H 0.18 5.40 8.06 -2.91 -0.02 5.38 16 Total: -1.00 -69.43 432.54 3.43 -65.99 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.91 Total: 35.20 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 8.39 Total: 8.73 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -7.83 Total: -120.82 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.07 Total: -32.09 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -69.43 3.43 -65.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071799337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.263 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds