Wall clock time and date at job start Tue Mar 31 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30838 * 125.89898 * 2 1 4 4 N 1.40081 * 108.20453 * 179.97438 * 3 2 1 5 5 C 1.46506 * 126.03681 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.46954 * 90.02311 * 5 4 3 7 7 C 1.50707 * 109.46774 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00097 * 354.45796 * 7 6 5 9 9 N 1.34775 * 119.99667 * 174.45902 * 7 6 5 10 10 C 1.46506 * 120.00030 * 184.45100 * 9 7 6 11 11 C 1.50707 * 109.47103 * 270.00389 * 10 9 7 12 12 H 1.07998 * 119.99957 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99566 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00165 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99610 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47205 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47454 * 119.99768 * 15 13 11 18 18 H 1.48499 * 109.46992 * 240.00274 * 15 13 11 19 19 C 1.39923 * 120.00153 * 4.45919 * 9 7 6 20 20 C 1.38872 * 120.07336 * 66.79372 * 19 9 7 21 21 C 1.38113 * 119.92646 * 179.97438 * 20 19 9 22 22 C 1.38284 * 120.07352 * 0.02562 * 21 20 19 23 23 C 1.38279 * 120.14129 * 359.95225 * 22 21 20 24 24 C 1.38117 * 120.06919 * 0.05351 * 23 22 21 25 25 C 1.34941 * 107.92894 * 0.26013 * 4 3 2 26 26 C 1.50706 * 126.12984 * 179.73165 * 25 4 3 27 27 C 1.35323 * 107.74452 * 359.58138 * 25 4 3 28 28 N 1.48020 * 126.03844 * 180.16149 * 27 25 4 29 29 O 1.21798 * 119.99915 * 270.32376 * 28 27 25 30 30 O 1.21800 * 120.00346 * 90.33202 * 28 27 25 31 31 H 1.08994 * 109.47859 * 90.02582 * 1 2 3 32 32 H 1.09010 * 109.46931 * 210.02446 * 1 2 3 33 33 H 1.09000 * 109.47199 * 330.02165 * 1 2 3 34 34 H 1.09004 * 109.46856 * 330.01915 * 5 4 3 35 35 H 1.09001 * 109.46840 * 210.02693 * 5 4 3 36 36 H 1.08998 * 109.47255 * 60.00196 * 6 5 4 37 37 H 1.08998 * 109.47196 * 299.99679 * 6 5 4 38 38 H 1.09001 * 109.46670 * 30.00181 * 10 9 7 39 39 H 1.08996 * 109.47328 * 150.00546 * 10 9 7 40 40 H 0.97008 * 120.00038 * 179.97438 * 14 13 11 41 41 H 1.07996 * 120.03472 * 359.70196 * 20 19 9 42 42 H 1.07998 * 119.96255 * 179.97438 * 21 20 19 43 43 H 1.08004 * 119.92698 * 179.97438 * 22 21 20 44 44 H 1.07999 * 119.96607 * 180.02562 * 23 22 21 45 45 H 1.07999 * 120.03237 * 179.97438 * 24 23 22 46 46 H 1.09008 * 109.46643 * 90.00400 * 26 25 4 47 47 H 1.08996 * 109.47128 * 210.00111 * 26 25 4 48 48 H 1.08995 * 109.47320 * 330.00599 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0013 6 6 5.2007 1.8017 1.4440 7 6 6.4154 2.6938 1.4447 8 8 6.9644 2.9716 0.3996 9 7 6.8916 3.1828 2.6069 10 6 8.0116 4.1272 2.6001 11 6 9.3104 3.3667 2.6791 12 1 9.3023 2.2879 2.7289 13 6 10.5089 4.0483 2.6867 14 7 10.5187 5.3619 2.6245 15 14 12.1187 3.1057 2.7838 16 1 11.8365 1.6489 2.8433 17 1 12.9395 3.4027 1.5825 18 1 12.8597 3.5161 4.0036 19 6 6.3164 2.7884 3.8199 20 6 6.4359 1.4740 4.2519 21 6 5.8674 1.0882 5.4500 22 6 5.1794 2.0089 6.2189 23 6 5.0590 3.3185 5.7918 24 6 5.6251 3.7107 4.5945 25 6 3.6142 -0.7153 -0.0049 26 6 4.8351 -1.5989 -0.0120 27 6 2.3271 -1.1330 0.0006 28 7 1.8683 -2.5403 0.0008 29 8 1.6802 -3.1197 -1.0539 30 8 1.6786 -3.1189 1.0557 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3633 -0.8899 0.5143 33 1 -0.3633 0.8902 0.5135 34 1 4.5565 2.4335 -0.5122 35 1 5.6094 0.9984 -0.5126 36 1 5.4341 0.8690 1.9575 37 1 4.3811 2.3041 1.9579 38 1 7.9883 4.7118 1.6804 39 1 7.9290 4.7950 3.4575 40 1 11.3619 5.8414 2.6302 41 1 6.9690 0.7534 3.6496 42 1 5.9596 0.0660 5.7864 43 1 4.7354 1.7044 7.1552 44 1 4.5214 4.0353 6.3947 45 1 5.5304 4.7336 4.2613 46 1 5.1323 -1.8161 1.0140 47 1 4.6061 -2.5307 -0.5290 48 1 5.6497 -1.0888 -0.5261 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078999917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:49 Heat of formation + Delta-G solvation = 65.968747 kcal Electronic energy + Delta-G solvation = -33766.423321 eV Core-core repulsion = 29212.725874 eV Total energy + Delta-G solvation = -4553.697447 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 372.163 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -42.71501 -41.60097 -40.16554 -38.39904 -36.61660 -35.55248 -34.97548 -33.30059 -32.83474 -31.65556 -30.82011 -29.56204 -29.21374 -28.40472 -27.13647 -25.91570 -24.20271 -22.91373 -22.49802 -22.09328 -21.35366 -20.42966 -19.24158 -18.93564 -18.88291 -17.68342 -17.17111 -16.71875 -16.44732 -16.18198 -15.96330 -15.52998 -15.42365 -14.76523 -14.56707 -14.39089 -14.29651 -13.95527 -13.80254 -13.44596 -13.28756 -13.22548 -13.14455 -13.02958 -12.73767 -12.50250 -12.36721 -12.29080 -11.83413 -11.80169 -11.62942 -11.49239 -11.33929 -11.28253 -11.14814 -11.12776 -10.95780 -10.78447 -10.31303 -9.91562 -9.87747 -9.70639 -9.48369 -8.83430 -8.78387 -8.57494 -7.88062 -6.19114 -4.24157 0.37031 0.92217 1.03888 1.40643 1.50022 1.66722 1.92767 2.93531 3.20640 3.28255 3.30820 3.47837 3.68870 3.81598 3.88389 4.13707 4.32338 4.45705 4.47121 4.57643 4.68599 4.84993 4.91532 5.02163 5.04969 5.05612 5.08390 5.11801 5.16696 5.20011 5.22237 5.28019 5.47059 5.52671 5.55398 5.63562 5.67331 5.87702 6.09596 6.11179 6.22640 6.45521 6.59497 6.62195 6.77981 6.86706 7.03819 7.15575 7.25964 7.46785 7.75105 8.02442 8.06831 8.56236 8.79428 9.40893 10.89381 Molecular weight = 372.16amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.002546 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.243071 B =10994.049041 C =11909.390783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.125 3.875 3 N -0.262 5.262 4 N -0.340 5.340 5 C 0.143 3.857 6 C -0.160 4.160 7 C 0.520 3.480 8 O -0.526 6.526 9 N -0.555 5.555 10 C 0.248 3.752 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.899 3.101 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.159 3.841 20 C -0.126 4.126 21 C -0.109 4.109 22 C -0.132 4.132 23 C -0.108 4.108 24 C -0.124 4.124 25 C 0.166 3.834 26 C -0.115 4.115 27 C -0.194 4.194 28 N 0.054 4.946 29 O -0.143 6.143 30 O -0.140 6.140 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.048 0.952 39 H 0.037 0.963 40 H 0.264 0.736 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.102 0.898 47 H 0.091 0.909 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.230 -10.621 0.346 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 N -0.083 5.083 4 N -0.119 5.119 5 C 0.023 3.977 6 C -0.201 4.201 7 C 0.306 3.694 8 O -0.402 6.402 9 N -0.282 5.282 10 C 0.131 3.869 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.727 3.273 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.067 3.933 20 C -0.146 4.146 21 C -0.128 4.128 22 C -0.150 4.150 23 C -0.127 4.127 24 C -0.143 4.143 25 C 0.032 3.968 26 C -0.173 4.173 27 C -0.288 4.288 28 N 0.584 4.416 29 O -0.365 6.365 30 O -0.363 6.363 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.120 0.880 47 H 0.110 0.890 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.349 -8.115 -0.270 18.254 hybrid contribution 1.021 -1.526 0.290 1.859 sum -15.328 -9.641 0.020 18.108 Atomic orbital electron populations 1.20402 0.85048 1.04597 1.04289 1.22140 0.97683 0.87071 0.97395 1.77676 0.85798 1.20379 1.24497 1.48709 1.06391 1.03194 1.53600 1.21828 0.82211 0.95477 0.98145 1.22090 0.98963 1.02095 0.96936 1.19868 0.84420 0.80978 0.84090 1.90729 1.59947 1.58859 1.30698 1.45950 1.33959 1.45781 1.02503 1.19496 0.81406 0.87110 0.98931 1.21343 0.90390 0.93472 1.51365 0.92334 1.24911 0.99257 0.94917 0.94857 1.69925 1.26947 1.06301 1.49967 0.86418 0.83164 0.79981 0.77735 1.19774 1.20760 1.20844 1.17727 0.94504 0.92855 0.88224 1.21321 1.00163 0.96012 0.97069 1.20987 0.97849 0.99565 0.94358 1.21093 1.00432 0.93592 0.99898 1.20995 0.99682 0.96160 0.95824 1.21312 0.97613 0.99905 0.95516 1.20611 0.94962 0.85974 0.95227 1.20842 0.92843 0.98199 1.05404 1.20332 0.93854 0.82496 1.32098 1.42543 0.97632 1.01353 1.00046 1.94551 1.53799 1.67171 1.21017 1.94557 1.53629 1.67157 1.20963 0.89111 0.90227 0.89019 0.86525 0.86736 0.88370 0.88096 0.93383 0.94501 0.92585 0.86061 0.86024 0.86231 0.85956 0.85692 0.87993 0.89049 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.44 36.00 0.38 -0.31 16 2 C 0.13 1.43 7.22 -82.41 -0.59 0.84 16 3 N -0.26 -3.28 12.58 33.67 0.42 -2.86 16 4 N -0.34 -3.94 3.61 -57.14 -0.21 -4.15 16 5 C 0.14 1.65 5.55 -4.04 -0.02 1.62 16 6 C -0.16 -2.05 4.69 -27.88 -0.13 -2.18 16 7 C 0.52 9.38 7.53 -10.98 -0.08 9.30 16 8 O -0.53 -11.29 15.61 5.55 0.09 -11.20 16 9 N -0.55 -10.87 2.51 -114.73 -0.29 -11.15 16 10 C 0.25 6.09 5.07 -5.19 -0.03 6.07 16 11 C -0.53 -14.22 9.39 -34.44 -0.32 -14.54 16 12 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.56 13.28 55.43 0.74 -24.82 16 15 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 C 0.16 2.64 4.42 -83.69 -0.37 2.27 16 20 C -0.13 -1.85 8.46 -39.39 -0.33 -2.18 16 21 C -0.11 -1.34 10.04 -39.61 -0.40 -1.74 16 22 C -0.13 -1.53 10.04 -39.55 -0.40 -1.93 16 23 C -0.11 -1.34 10.04 -39.61 -0.40 -1.74 16 24 C -0.12 -1.85 9.64 -39.39 -0.38 -2.23 16 25 C 0.17 1.81 6.93 -82.26 -0.57 1.24 16 26 C -0.12 -0.93 10.08 36.01 0.36 -0.57 16 27 C -0.19 -2.32 6.60 -80.37 -0.53 -2.85 16 28 N 0.05 0.67 4.41 33.75 0.15 0.82 16 29 O -0.14 -1.86 19.25 -29.46 -0.57 -2.43 16 30 O -0.14 -1.83 19.26 -29.46 -0.57 -2.40 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.11 1.20 6.94 -51.93 -0.36 0.84 16 36 H 0.10 1.14 6.99 -51.93 -0.36 0.77 16 37 H 0.10 1.28 8.02 -51.93 -0.42 0.87 16 38 H 0.05 1.31 7.49 -51.93 -0.39 0.92 16 39 H 0.04 0.94 7.83 -51.93 -0.41 0.53 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.12 1.74 7.90 -52.49 -0.41 1.33 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 45 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 46 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.10 0.67 7.08 -51.93 -0.37 0.30 16 LS Contribution 422.43 15.07 6.37 6.37 Total: -1.00 -32.65 422.43 -9.29 -41.95 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.49 Total: 1.04 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.91 Total: -7.29 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.81 Total: -42.16 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -1.05 Total: -16.03 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -32.65 -9.29 -41.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078999917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.917 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds