Wall clock time and date at job start Tue Mar 31 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30838 * 125.89898 * 2 1 4 4 N 1.40081 * 108.20453 * 179.97438 * 3 2 1 5 5 C 1.46506 * 126.03681 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.46954 * 90.02311 * 5 4 3 7 7 C 1.50707 * 109.46774 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00097 * 354.45796 * 7 6 5 9 9 N 1.34775 * 119.99667 * 174.45902 * 7 6 5 10 10 C 1.46506 * 120.00030 * 184.45100 * 9 7 6 11 11 C 1.50707 * 109.47103 * 270.00389 * 10 9 7 12 12 H 1.07998 * 119.99957 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99566 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00165 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99610 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47205 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47454 * 119.99768 * 15 13 11 18 18 H 1.48499 * 109.46992 * 240.00274 * 15 13 11 19 19 C 1.39923 * 120.00153 * 4.45919 * 9 7 6 20 20 C 1.38872 * 120.07336 * 66.79372 * 19 9 7 21 21 C 1.38113 * 119.92646 * 179.97438 * 20 19 9 22 22 C 1.38284 * 120.07352 * 0.02562 * 21 20 19 23 23 C 1.38279 * 120.14129 * 359.95225 * 22 21 20 24 24 C 1.38117 * 120.06919 * 0.05351 * 23 22 21 25 25 C 1.34941 * 107.92894 * 0.26013 * 4 3 2 26 26 C 1.50706 * 126.12984 * 179.73165 * 25 4 3 27 27 C 1.35323 * 107.74452 * 359.58138 * 25 4 3 28 28 N 1.48020 * 126.03844 * 180.16149 * 27 25 4 29 29 O 1.21798 * 119.99915 * 270.32376 * 28 27 25 30 30 O 1.21800 * 120.00346 * 90.33202 * 28 27 25 31 31 H 1.08994 * 109.47859 * 90.02582 * 1 2 3 32 32 H 1.09010 * 109.46931 * 210.02446 * 1 2 3 33 33 H 1.09000 * 109.47199 * 330.02165 * 1 2 3 34 34 H 1.09004 * 109.46856 * 330.01915 * 5 4 3 35 35 H 1.09001 * 109.46840 * 210.02693 * 5 4 3 36 36 H 1.08998 * 109.47255 * 60.00196 * 6 5 4 37 37 H 1.08998 * 109.47196 * 299.99679 * 6 5 4 38 38 H 1.09001 * 109.46670 * 30.00181 * 10 9 7 39 39 H 1.08996 * 109.47328 * 150.00546 * 10 9 7 40 40 H 0.97008 * 120.00038 * 179.97438 * 14 13 11 41 41 H 1.07996 * 120.03472 * 359.70196 * 20 19 9 42 42 H 1.07998 * 119.96255 * 179.97438 * 21 20 19 43 43 H 1.08004 * 119.92698 * 179.97438 * 22 21 20 44 44 H 1.07999 * 119.96607 * 180.02562 * 23 22 21 45 45 H 1.07999 * 120.03237 * 179.97438 * 24 23 22 46 46 H 1.09008 * 109.46643 * 90.00400 * 26 25 4 47 47 H 1.08996 * 109.47128 * 210.00111 * 26 25 4 48 48 H 1.08995 * 109.47320 * 330.00599 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0013 6 6 5.2007 1.8017 1.4440 7 6 6.4154 2.6938 1.4447 8 8 6.9644 2.9716 0.3996 9 7 6.8916 3.1828 2.6069 10 6 8.0116 4.1272 2.6001 11 6 9.3104 3.3667 2.6791 12 1 9.3023 2.2879 2.7289 13 6 10.5089 4.0483 2.6867 14 7 10.5187 5.3619 2.6245 15 14 12.1187 3.1057 2.7838 16 1 11.8365 1.6489 2.8433 17 1 12.9395 3.4027 1.5825 18 1 12.8597 3.5161 4.0036 19 6 6.3164 2.7884 3.8199 20 6 6.4359 1.4740 4.2519 21 6 5.8674 1.0882 5.4500 22 6 5.1794 2.0089 6.2189 23 6 5.0590 3.3185 5.7918 24 6 5.6251 3.7107 4.5945 25 6 3.6142 -0.7153 -0.0049 26 6 4.8351 -1.5989 -0.0120 27 6 2.3271 -1.1330 0.0006 28 7 1.8683 -2.5403 0.0008 29 8 1.6802 -3.1197 -1.0539 30 8 1.6786 -3.1189 1.0557 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3633 -0.8899 0.5143 33 1 -0.3633 0.8902 0.5135 34 1 4.5565 2.4335 -0.5122 35 1 5.6094 0.9984 -0.5126 36 1 5.4341 0.8690 1.9575 37 1 4.3811 2.3041 1.9579 38 1 7.9883 4.7118 1.6804 39 1 7.9290 4.7950 3.4575 40 1 11.3619 5.8414 2.6302 41 1 6.9690 0.7534 3.6496 42 1 5.9596 0.0660 5.7864 43 1 4.7354 1.7044 7.1552 44 1 4.5214 4.0353 6.3947 45 1 5.5304 4.7336 4.2613 46 1 5.1323 -1.8161 1.0140 47 1 4.6061 -2.5307 -0.5290 48 1 5.6497 -1.0888 -0.5261 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078999917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:47 Heat of formation + Delta-G solvation = 49.296533 kcal Electronic energy + Delta-G solvation = -33767.146283 eV Core-core repulsion = 29212.725874 eV Total energy + Delta-G solvation = -4554.420408 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 372.163 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.62101 -42.53548 -41.51492 -39.61477 -37.59809 -36.78444 -36.19484 -34.84140 -34.10290 -32.66090 -31.85119 -30.91402 -30.03254 -29.53597 -28.54633 -26.92385 -25.53838 -24.38773 -23.58183 -23.32404 -22.25250 -21.28886 -20.54677 -19.90320 -19.79256 -18.88199 -18.70271 -18.15636 -17.62790 -17.27817 -17.05672 -16.86468 -16.69340 -16.13668 -15.81729 -15.54123 -15.22031 -14.80964 -14.64914 -14.55051 -14.40978 -14.32655 -14.20369 -14.04525 -13.75150 -13.63869 -13.47322 -13.43390 -13.16699 -13.03975 -12.79884 -12.74333 -12.71351 -12.50965 -12.43038 -12.28853 -12.18300 -12.15177 -12.05385 -11.74332 -11.16283 -10.71063 -10.68533 -10.47977 -10.19004 -9.87240 -9.29255 -8.27819 -6.42074 -0.62612 0.05583 0.11560 0.30903 0.45947 0.80939 1.01804 1.34328 1.35632 1.46763 1.53376 2.08252 2.36040 2.81620 2.91699 2.97418 3.03233 3.30645 3.39065 3.54499 3.65942 3.71714 4.00749 4.07683 4.08803 4.25375 4.27256 4.28273 4.29659 4.41066 4.47118 4.48274 4.55712 4.61071 4.67178 4.70129 4.74393 4.91360 4.96235 5.06299 5.11457 5.20850 5.32156 5.35511 5.49780 5.59053 5.61983 5.70189 5.96435 6.00191 6.02055 6.46587 6.55861 6.66233 7.11731 7.29830 8.79814 Molecular weight = 372.16amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.002546 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.243071 B =10994.049041 C =11909.390783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.125 3.875 3 N -0.287 5.287 4 N -0.344 5.344 5 C 0.150 3.850 6 C -0.136 4.136 7 C 0.515 3.485 8 O -0.570 6.570 9 N -0.559 5.559 10 C 0.266 3.734 11 C -0.538 4.538 12 H 0.055 0.945 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.966 3.034 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.273 1.273 19 C 0.125 3.875 20 C -0.135 4.135 21 C -0.104 4.104 22 C -0.121 4.121 23 C -0.105 4.105 24 C -0.141 4.141 25 C 0.172 3.828 26 C -0.118 4.118 27 C -0.213 4.213 28 N 0.060 4.940 29 O -0.153 6.153 30 O -0.146 6.146 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.009 0.991 39 H 0.020 0.980 40 H 0.268 0.732 41 H 0.120 0.880 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.113 0.887 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.014 -12.949 2.175 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 N -0.108 5.108 4 N -0.122 5.122 5 C 0.030 3.970 6 C -0.176 4.176 7 C 0.304 3.696 8 O -0.449 6.449 9 N -0.286 5.286 10 C 0.146 3.854 11 C -0.576 4.576 12 H 0.073 0.927 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.790 3.210 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.198 1.198 19 C 0.034 3.966 20 C -0.155 4.155 21 C -0.122 4.122 22 C -0.139 4.139 23 C -0.123 4.123 24 C -0.161 4.161 25 C 0.039 3.961 26 C -0.175 4.175 27 C -0.307 4.307 28 N 0.589 4.411 29 O -0.374 6.374 30 O -0.369 6.369 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.138 0.862 42 H 0.171 0.829 43 H 0.174 0.826 44 H 0.167 0.833 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.114 0.886 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.176 -10.471 1.582 20.178 hybrid contribution 1.175 -0.791 -0.204 1.431 sum -16.001 -11.262 1.377 19.616 Atomic orbital electron populations 1.20555 0.83037 1.05394 1.05397 1.22662 0.99009 0.86554 0.96076 1.77663 0.86238 1.21134 1.25812 1.48610 1.06103 1.03420 1.54116 1.21708 0.82647 0.95552 0.97111 1.21881 0.96124 1.01425 0.98214 1.20689 0.85231 0.80733 0.82909 1.90695 1.61586 1.60571 1.32057 1.45759 1.33084 1.45148 1.04565 1.18875 0.82982 0.87561 0.95997 1.21609 0.91583 0.93391 1.51052 0.92671 1.25814 1.02896 0.95806 0.94420 1.70043 1.27961 1.07850 1.50847 0.85385 0.78704 0.78938 0.77931 1.18863 1.20545 1.19824 1.17964 0.96515 0.94368 0.87758 1.21398 1.00807 0.94986 0.98268 1.21364 0.96571 1.01267 0.93020 1.21562 0.98881 0.92739 1.00717 1.21333 0.98842 0.97456 0.94709 1.21396 0.98628 0.99318 0.96765 1.21036 0.95629 0.85814 0.93654 1.21022 0.92015 0.97935 1.06576 1.20489 0.94537 0.82123 1.33546 1.42582 0.97219 1.01502 0.99777 1.94548 1.54177 1.67525 1.21137 1.94548 1.53840 1.67491 1.21068 0.87772 0.89811 0.87784 0.87313 0.85619 0.86475 0.87718 0.97341 0.96229 0.92342 0.86197 0.82918 0.82554 0.83251 0.86848 0.86509 0.88586 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 10.44 71.24 0.74 -0.50 16 2 C 0.13 2.72 7.22 43.10 0.31 3.03 16 3 N -0.29 -6.95 12.58 -47.39 -0.60 -7.54 16 4 N -0.34 -7.63 3.61 -334.68 -1.21 -8.84 16 5 C 0.15 3.40 5.55 86.38 0.48 3.87 16 6 C -0.14 -3.45 4.69 29.85 0.14 -3.31 16 7 C 0.52 19.30 7.53 87.66 0.66 19.96 16 8 O -0.57 -25.73 15.61 -3.04 -0.05 -25.78 16 9 N -0.56 -22.87 2.51 -635.28 -1.59 -24.47 16 10 C 0.27 13.86 5.07 85.63 0.43 14.29 16 11 C -0.54 -29.94 9.39 25.60 0.24 -29.70 16 12 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 13 C 0.01 0.55 5.46 84.66 0.46 1.01 16 14 N -0.93 -54.74 13.28 21.45 0.28 -54.46 16 15 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 16 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 C 0.12 4.17 4.42 38.15 0.17 4.34 16 20 C -0.14 -3.78 8.46 22.39 0.19 -3.59 16 21 C -0.10 -2.19 10.04 22.25 0.22 -1.97 16 22 C -0.12 -2.32 10.04 22.29 0.22 -2.10 16 23 C -0.11 -2.35 10.04 22.25 0.22 -2.12 16 24 C -0.14 -4.23 9.64 22.39 0.22 -4.02 16 25 C 0.17 3.51 6.93 41.41 0.29 3.79 16 26 C -0.12 -1.66 10.08 71.24 0.72 -0.95 16 27 C -0.21 -4.81 6.60 36.10 0.24 -4.57 16 28 N 0.06 1.41 4.41 -47.12 -0.21 1.20 16 29 O -0.15 -3.81 19.25 18.89 0.36 -3.44 16 30 O -0.15 -3.63 19.26 18.89 0.36 -3.26 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 35 H 0.13 2.57 6.94 -2.39 -0.02 2.55 16 36 H 0.12 2.54 6.99 -2.39 -0.02 2.53 16 37 H 0.10 2.62 8.02 -2.39 -0.02 2.61 16 38 H 0.01 0.50 7.49 -2.39 -0.02 0.49 16 39 H 0.02 1.07 7.83 -2.39 -0.02 1.05 16 40 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 41 H 0.12 3.30 7.90 -2.91 -0.02 3.28 16 42 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 43 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 45 H 0.11 3.52 8.06 -2.91 -0.02 3.50 16 46 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 48 H 0.11 1.28 7.08 -2.39 -0.02 1.27 16 Total: -1.00 -73.73 422.43 6.33 -67.40 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.99 Total: 16.03 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.96 Total: -2.52 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -3.32 Total: -94.10 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: 0.68 Total: -32.48 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -73.73 6.33 -67.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078999917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.696 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds