Wall clock time and date at job start Tue Mar 31 2020 07:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35930 * 116.99930 * 2 1 4 4 C 1.38746 * 120.03815 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.95279 * 179.97438 * 4 3 2 6 6 C 1.38381 * 120.04562 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 119.96019 * 180.02562 * 6 5 4 8 8 C 1.38349 * 120.08775 * 0.02562 * 6 5 4 9 9 C 1.38172 * 120.03516 * 359.70090 * 8 6 5 10 10 C 1.50705 * 120.01984 * 180.29740 * 9 8 6 11 11 N 1.46500 * 109.47387 * 260.25590 * 10 9 8 12 12 C 1.46499 * 119.99810 * 269.99971 * 11 10 9 13 13 C 1.34774 * 120.00230 * 89.99932 * 11 10 9 14 14 O 1.21285 * 119.99754 * 357.50864 * 13 11 10 15 15 C 1.50704 * 120.00154 * 177.51474 * 13 11 10 16 16 H 1.08997 * 109.47012 * 40.01540 * 15 13 11 17 17 C 1.50699 * 109.46714 * 280.01773 * 15 13 11 18 18 H 1.08000 * 120.00301 * 326.67133 * 17 15 13 19 19 C 1.37878 * 119.99940 * 146.66859 * 17 15 13 20 20 N 1.31511 * 119.99822 * 5.51887 * 19 17 15 21 21 Si 1.86794 * 120.00239 * 185.52128 * 19 17 15 22 22 H 1.48500 * 109.47265 * 89.99793 * 21 19 17 23 23 H 1.48498 * 109.47453 * 210.00272 * 21 19 17 24 24 H 1.48508 * 109.47075 * 329.99997 * 21 19 17 25 25 C 1.50693 * 109.47006 * 160.01903 * 15 13 11 26 26 C 1.38238 * 120.00007 * 67.09868 * 25 15 13 27 27 C 1.38239 * 119.99841 * 179.80516 * 26 25 15 28 28 C 1.38237 * 119.99771 * 0.39895 * 27 26 25 29 29 C 1.38232 * 120.00243 * 359.85549 * 28 27 26 30 30 C 1.38232 * 120.00060 * 359.95233 * 29 28 27 31 31 H 1.08997 * 109.47367 * 59.99566 * 1 2 3 32 32 H 1.08999 * 109.46867 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47164 * 299.99983 * 1 2 3 34 34 H 1.08000 * 120.02285 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.97693 * 180.02562 * 5 4 3 36 36 H 1.08000 * 119.98551 * 179.97438 * 8 6 5 37 37 H 1.08998 * 109.47047 * 20.25389 * 10 9 8 38 38 H 1.08998 * 109.47085 * 140.25393 * 10 9 8 39 39 H 1.09006 * 109.47019 * 88.07091 * 12 11 10 40 40 H 1.08997 * 109.47090 * 208.07187 * 12 11 10 41 41 H 1.09000 * 109.47341 * 328.07621 * 12 11 10 42 42 H 0.97001 * 120.00002 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.00125 * 359.97438 * 26 25 15 44 44 H 1.07996 * 120.00116 * 180.22645 * 27 26 25 45 45 H 1.07998 * 119.99773 * 179.83298 * 28 27 26 46 46 H 1.08002 * 119.99852 * 179.97438 * 29 28 27 47 47 H 1.08006 * 120.00061 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9201 3.6050 0.0011 6 6 3.3020 3.6765 0.0005 7 17 4.0901 5.2233 0.0019 8 6 4.0565 2.5169 -0.0011 9 6 3.4310 1.2848 0.0041 10 6 4.2533 0.0218 0.0091 11 7 4.3236 -0.5206 -1.3499 12 6 3.3108 -1.4731 -1.8117 13 6 5.3199 -0.1433 -2.1754 14 8 6.1323 0.6793 -1.8090 15 6 5.4244 -0.7435 -3.5539 16 1 4.4278 -0.8400 -3.9846 17 6 6.0659 -2.1040 -3.4619 18 1 6.8192 -2.2963 -2.7123 19 6 5.6911 -3.1033 -4.3348 20 7 4.8551 -2.8404 -5.3154 21 14 6.3707 -4.8305 -4.1246 22 1 5.4726 -5.6111 -3.2362 23 1 6.4547 -5.4942 -5.4504 24 1 7.7253 -4.7593 -3.5201 25 6 6.2653 0.1504 -4.4284 26 6 7.6135 0.3049 -4.1651 27 6 8.3857 1.1217 -4.9698 28 6 7.8079 1.7904 -6.0328 29 6 6.4587 1.6400 -6.2929 30 6 5.6873 0.8201 -5.4907 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2126 2.3199 0.0005 35 1 1.3328 4.5114 0.0019 36 1 5.1350 2.5746 -0.0019 37 1 5.2595 0.2448 0.3638 38 1 3.7894 -0.7110 0.6693 39 1 2.4669 -0.9290 -2.2360 40 1 3.7434 -2.1232 -2.5722 41 1 2.9684 -2.0758 -0.9705 42 1 4.5917 -3.5434 -5.9297 43 1 8.0641 -0.2146 -3.3324 44 1 9.4398 1.2396 -4.7664 45 1 8.4106 2.4306 -6.6599 46 1 6.0072 2.1627 -7.1232 47 1 4.6332 0.7022 -5.6941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095465975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:24 Heat of formation + Delta-G solvation = -27.353387 kcal Electronic energy + Delta-G solvation = -32180.592603 eV Core-core repulsion = 27933.546156 eV Total energy + Delta-G solvation = -4247.046447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 373.123 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.45577 -39.15478 -37.84601 -37.59135 -36.17965 -34.81006 -33.70576 -31.83905 -30.97250 -29.98945 -29.87190 -27.88425 -27.34888 -26.52824 -25.29381 -23.63446 -22.24834 -21.80617 -21.52100 -20.47359 -18.47366 -17.96473 -16.73057 -16.60941 -16.25242 -16.06467 -15.82220 -15.73758 -15.17151 -14.73348 -14.49403 -14.25093 -14.01452 -13.98741 -13.72644 -13.29821 -13.00354 -12.73365 -12.51831 -12.36142 -12.23889 -12.16384 -12.09998 -11.90291 -11.71790 -11.62378 -11.41769 -11.23724 -11.09754 -10.99235 -10.97032 -10.74817 -10.70538 -10.35483 -10.19923 -9.92329 -9.38919 -9.10549 -8.73964 -8.52436 -8.15222 -7.90495 -7.87599 -7.54129 -6.25282 -4.30216 1.15095 1.21871 2.20194 2.43004 2.46762 3.17056 3.19958 3.28324 3.31498 3.46832 3.72794 4.05552 4.30675 4.60585 4.67331 4.88168 4.91819 5.00445 5.10632 5.11864 5.18880 5.32637 5.41989 5.52096 5.76921 5.80905 5.84145 5.91318 5.95529 5.97051 6.06295 6.10637 6.19338 6.28588 6.30998 6.36301 6.55356 6.62100 6.65856 6.70197 6.89736 7.02148 7.19858 7.23932 7.30221 7.42873 7.52220 7.66415 7.81226 8.02178 8.08252 8.29456 8.73110 9.22555 9.33997 10.82645 Molecular weight = 373.12amu Principal moments of inertia in cm(-1) A = 0.008277 B = 0.003771 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.853746 B = 7422.543188 C = 9696.898540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.146 3.854 4 C -0.204 4.204 5 C -0.073 4.073 6 C -0.074 4.074 7 Cl -0.076 7.076 8 C -0.046 4.046 9 C -0.116 4.116 10 C 0.164 3.836 11 N -0.609 5.609 12 C 0.087 3.913 13 C 0.530 3.470 14 O -0.561 6.561 15 C 0.055 3.945 16 H 0.082 0.918 17 C -0.507 4.507 18 H 0.062 0.938 19 C 0.074 3.926 20 N -0.877 5.877 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.015 4.015 26 C -0.077 4.077 27 C -0.137 4.137 28 C -0.148 4.148 29 C -0.134 4.134 30 C -0.118 4.118 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.145 0.855 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.266 0.734 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.559 7.616 9.443 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.099 3.901 4 C -0.223 4.223 5 C -0.092 4.092 6 C -0.100 4.100 7 Cl -0.048 7.048 8 C -0.065 4.065 9 C -0.118 4.118 10 C 0.041 3.959 11 N -0.342 5.342 12 C -0.056 4.056 13 C 0.322 3.678 14 O -0.440 6.440 15 C 0.034 3.966 16 H 0.100 0.900 17 C -0.544 4.544 18 H 0.080 0.920 19 C -0.131 4.131 20 N -0.512 5.512 21 Si 0.723 3.277 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.196 1.196 25 C -0.016 4.016 26 C -0.095 4.095 27 C -0.155 4.155 28 C -0.166 4.166 29 C -0.152 4.152 30 C -0.136 4.136 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.163 0.837 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.132 0.868 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.080 7.865 9.461 15.291 hybrid contribution -0.060 -0.648 -0.151 0.668 sum -9.140 7.217 9.310 14.910 Atomic orbital electron populations 1.23075 0.78554 1.04115 1.01161 1.86159 1.21115 1.26277 1.88110 1.18898 0.91713 0.84382 0.95063 1.21096 1.00070 0.91597 1.09552 1.20751 0.92331 0.97896 0.98254 1.20753 0.92712 0.86717 1.09848 1.98352 1.80825 1.28365 1.97235 1.20960 1.00951 0.89299 0.95312 1.19717 0.90814 0.96449 1.04854 1.20055 0.99277 0.91059 0.85513 1.47778 1.28397 1.45487 1.12553 1.21826 0.90700 0.92284 1.00769 1.21696 0.78507 0.79375 0.88229 1.90544 1.41711 1.34335 1.77361 1.18104 0.98679 0.93409 0.86382 0.89964 1.20616 1.23300 0.92862 1.17658 0.91977 1.24936 0.94625 0.99065 0.94443 1.69935 1.32980 1.33457 1.14876 0.86516 0.79745 0.83824 0.77625 1.20314 1.21081 1.19632 1.20080 0.94375 0.92246 0.94904 1.20866 0.93840 0.96705 0.98066 1.20973 0.98885 0.99115 0.96571 1.20788 0.95108 1.01787 0.98934 1.20871 0.94280 1.00312 0.99771 1.20972 0.99319 0.97116 0.96237 0.92596 0.88068 0.92838 0.84807 0.85054 0.83750 0.89483 0.89931 0.94316 0.87989 0.92592 0.92402 0.86795 0.87667 0.87829 0.87706 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -3.68 8.45 -19.52 -0.16 -3.84 16 3 C 0.15 1.93 6.66 -39.23 -0.26 1.67 16 4 C -0.20 -2.32 9.04 -39.44 -0.36 -2.68 16 5 C -0.07 -0.86 9.82 -39.57 -0.39 -1.25 16 6 C -0.07 -1.01 6.32 -39.49 -0.25 -1.26 16 7 Cl -0.08 -1.00 28.95 -51.86 -1.50 -2.50 16 8 C -0.05 -0.70 9.45 -39.56 -0.37 -1.07 16 9 C -0.12 -1.75 5.47 -104.48 -0.57 -2.32 16 10 C 0.16 2.63 5.23 -5.19 -0.03 2.60 16 11 N -0.61 -11.47 2.86 -182.95 -0.52 -11.99 16 12 C 0.09 1.52 8.99 59.85 0.54 2.05 16 13 C 0.53 11.80 6.79 -10.98 -0.07 11.73 16 14 O -0.56 -13.35 14.79 5.55 0.08 -13.26 16 15 C 0.06 1.31 1.50 -94.08 -0.14 1.17 16 16 H 0.08 2.04 6.12 -51.93 -0.32 1.73 16 17 C -0.51 -12.70 6.54 -34.44 -0.23 -12.93 16 18 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 19 C 0.07 1.86 5.31 -17.82 -0.09 1.76 16 20 N -0.88 -22.73 12.87 55.43 0.71 -22.01 16 21 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.02 -0.36 4.51 -104.63 -0.47 -0.83 16 26 C -0.08 -1.76 8.04 -39.58 -0.32 -2.08 16 27 C -0.14 -2.79 10.05 -39.58 -0.40 -3.18 16 28 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 29 C -0.13 -2.66 10.05 -39.59 -0.40 -3.06 16 30 C -0.12 -2.63 9.67 -39.58 -0.38 -3.01 16 31 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 34 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.14 2.33 8.04 -52.49 -0.42 1.91 16 37 H 0.09 1.45 7.32 -51.93 -0.38 1.06 16 38 H 0.08 1.16 7.62 -51.93 -0.40 0.76 16 39 H 0.04 0.65 7.92 -51.93 -0.41 0.23 16 40 H 0.10 2.07 5.50 -51.93 -0.29 1.79 16 41 H 0.06 0.84 7.92 -51.93 -0.41 0.43 16 42 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 43 H 0.11 2.69 7.76 -52.49 -0.41 2.28 16 44 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 45 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 46 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 47 H 0.11 2.35 7.96 -52.48 -0.42 1.93 16 LS Contribution 406.34 15.07 6.12 6.12 Total: -1.00 -29.09 406.34 -10.13 -39.22 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.23 Total: 8.16 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -3.60 Total: -14.72 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.19 Total: -34.00 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.08 Total: -17.10 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.09 -10.13 -39.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095465975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.864 kcal (2) G-P(sol) polarization free energy of solvation -29.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds