Wall clock time and date at job start Tue Mar 31 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35930 * 116.99930 * 2 1 4 4 C 1.38746 * 120.03815 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.95279 * 179.97438 * 4 3 2 6 6 C 1.38381 * 120.04562 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 119.96019 * 180.02562 * 6 5 4 8 8 C 1.38349 * 120.08775 * 0.02562 * 6 5 4 9 9 C 1.38172 * 120.03516 * 359.70090 * 8 6 5 10 10 C 1.50705 * 120.01984 * 180.29740 * 9 8 6 11 11 N 1.46500 * 109.47387 * 260.25590 * 10 9 8 12 12 C 1.46499 * 119.99810 * 269.99971 * 11 10 9 13 13 C 1.34774 * 120.00230 * 89.99932 * 11 10 9 14 14 O 1.21285 * 119.99754 * 357.50864 * 13 11 10 15 15 C 1.50704 * 120.00154 * 177.51474 * 13 11 10 16 16 H 1.08997 * 109.47012 * 40.01540 * 15 13 11 17 17 C 1.50699 * 109.46714 * 280.01773 * 15 13 11 18 18 H 1.08000 * 120.00301 * 326.67133 * 17 15 13 19 19 C 1.37878 * 119.99940 * 146.66859 * 17 15 13 20 20 N 1.31511 * 119.99822 * 5.51887 * 19 17 15 21 21 Si 1.86794 * 120.00239 * 185.52128 * 19 17 15 22 22 H 1.48500 * 109.47265 * 89.99793 * 21 19 17 23 23 H 1.48498 * 109.47453 * 210.00272 * 21 19 17 24 24 H 1.48508 * 109.47075 * 329.99997 * 21 19 17 25 25 C 1.50693 * 109.47006 * 160.01903 * 15 13 11 26 26 C 1.38238 * 120.00007 * 67.09868 * 25 15 13 27 27 C 1.38239 * 119.99841 * 179.80516 * 26 25 15 28 28 C 1.38237 * 119.99771 * 0.39895 * 27 26 25 29 29 C 1.38232 * 120.00243 * 359.85549 * 28 27 26 30 30 C 1.38232 * 120.00060 * 359.95233 * 29 28 27 31 31 H 1.08997 * 109.47367 * 59.99566 * 1 2 3 32 32 H 1.08999 * 109.46867 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47164 * 299.99983 * 1 2 3 34 34 H 1.08000 * 120.02285 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.97693 * 180.02562 * 5 4 3 36 36 H 1.08000 * 119.98551 * 179.97438 * 8 6 5 37 37 H 1.08998 * 109.47047 * 20.25389 * 10 9 8 38 38 H 1.08998 * 109.47085 * 140.25393 * 10 9 8 39 39 H 1.09006 * 109.47019 * 88.07091 * 12 11 10 40 40 H 1.08997 * 109.47090 * 208.07187 * 12 11 10 41 41 H 1.09000 * 109.47341 * 328.07621 * 12 11 10 42 42 H 0.97001 * 120.00002 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.00125 * 359.97438 * 26 25 15 44 44 H 1.07996 * 120.00116 * 180.22645 * 27 26 25 45 45 H 1.07998 * 119.99773 * 179.83298 * 28 27 26 46 46 H 1.08002 * 119.99852 * 179.97438 * 29 28 27 47 47 H 1.08006 * 120.00061 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9201 3.6050 0.0011 6 6 3.3020 3.6765 0.0005 7 17 4.0901 5.2233 0.0019 8 6 4.0565 2.5169 -0.0011 9 6 3.4310 1.2848 0.0041 10 6 4.2533 0.0218 0.0091 11 7 4.3236 -0.5206 -1.3499 12 6 3.3108 -1.4731 -1.8117 13 6 5.3199 -0.1433 -2.1754 14 8 6.1323 0.6793 -1.8090 15 6 5.4244 -0.7435 -3.5539 16 1 4.4278 -0.8400 -3.9846 17 6 6.0659 -2.1040 -3.4619 18 1 6.8192 -2.2963 -2.7123 19 6 5.6911 -3.1033 -4.3348 20 7 4.8551 -2.8404 -5.3154 21 14 6.3707 -4.8305 -4.1246 22 1 5.4726 -5.6111 -3.2362 23 1 6.4547 -5.4942 -5.4504 24 1 7.7253 -4.7593 -3.5201 25 6 6.2653 0.1504 -4.4284 26 6 7.6135 0.3049 -4.1651 27 6 8.3857 1.1217 -4.9698 28 6 7.8079 1.7904 -6.0328 29 6 6.4587 1.6400 -6.2929 30 6 5.6873 0.8201 -5.4907 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2126 2.3199 0.0005 35 1 1.3328 4.5114 0.0019 36 1 5.1350 2.5746 -0.0019 37 1 5.2595 0.2448 0.3638 38 1 3.7894 -0.7110 0.6693 39 1 2.4669 -0.9290 -2.2360 40 1 3.7434 -2.1232 -2.5722 41 1 2.9684 -2.0758 -0.9705 42 1 4.5917 -3.5434 -5.9297 43 1 8.0641 -0.2146 -3.3324 44 1 9.4398 1.2396 -4.7664 45 1 8.4106 2.4306 -6.6599 46 1 6.0072 2.1627 -7.1232 47 1 4.6332 0.7022 -5.6941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095465975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:22 Heat of formation + Delta-G solvation = -40.384506 kcal Electronic energy + Delta-G solvation = -32181.157675 eV Core-core repulsion = 27933.546156 eV Total energy + Delta-G solvation = -4247.611519 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 373.123 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.53641 -40.72327 -39.36364 -38.63140 -37.23156 -36.32958 -35.53215 -33.18272 -32.60227 -31.52053 -30.97560 -29.35076 -28.38738 -27.76574 -26.86865 -25.36256 -23.24473 -23.17636 -23.00485 -22.00776 -20.00345 -19.00125 -18.57578 -17.93266 -17.52103 -17.31672 -17.17042 -17.04451 -16.50691 -16.23050 -15.93835 -15.62701 -15.44003 -15.33853 -14.90756 -14.50825 -14.36225 -14.17115 -14.00013 -13.88352 -13.74608 -13.49001 -13.44227 -13.23229 -13.07295 -12.82592 -12.79706 -12.73846 -12.71668 -12.46455 -12.19223 -12.16976 -11.90491 -11.75872 -11.61293 -11.61050 -11.25039 -10.65130 -10.44373 -10.00576 -9.54066 -9.50747 -9.24068 -9.07323 -8.18582 -6.28786 0.12176 0.19668 0.76513 0.82008 1.17342 1.42099 1.44865 1.53256 1.98413 2.26426 2.34803 2.45516 2.73031 3.10935 3.27067 3.63551 3.71517 3.99898 4.13542 4.17046 4.24798 4.30491 4.40202 4.44071 4.45127 4.47001 4.53412 4.55550 4.59823 4.72957 4.78798 4.82617 4.87332 4.89062 4.99327 5.06740 5.10172 5.14880 5.20601 5.24168 5.37966 5.47166 5.58684 5.66577 5.78796 5.80246 5.86967 5.98189 6.27088 6.37151 6.40996 6.63766 6.75314 7.36533 7.52744 8.89050 Molecular weight = 373.12amu Principal moments of inertia in cm(-1) A = 0.008277 B = 0.003771 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.853746 B = 7422.543188 C = 9696.898540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.319 6.319 3 C 0.146 3.854 4 C -0.196 4.196 5 C -0.066 4.066 6 C -0.087 4.087 7 Cl -0.076 7.076 8 C -0.063 4.063 9 C -0.138 4.138 10 C 0.166 3.834 11 N -0.605 5.605 12 C 0.095 3.905 13 C 0.525 3.475 14 O -0.585 6.585 15 C 0.062 3.938 16 H 0.064 0.936 17 C -0.511 4.511 18 H 0.043 0.957 19 C 0.041 3.959 20 N -0.899 5.899 21 Si 0.948 3.052 22 H -0.264 1.264 23 H -0.284 1.284 24 H -0.278 1.278 25 C -0.043 4.043 26 C -0.103 4.103 27 C -0.139 4.139 28 C -0.143 4.143 29 C -0.131 4.131 30 C -0.141 4.141 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.267 0.733 43 H 0.093 0.907 44 H 0.133 0.867 45 H 0.146 0.854 46 H 0.139 0.861 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 8.350 9.262 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.232 6.232 3 C 0.099 3.901 4 C -0.214 4.214 5 C -0.084 4.084 6 C -0.113 4.113 7 Cl -0.047 7.047 8 C -0.083 4.083 9 C -0.140 4.140 10 C 0.044 3.956 11 N -0.336 5.336 12 C -0.047 4.047 13 C 0.316 3.684 14 O -0.466 6.466 15 C 0.041 3.959 16 H 0.082 0.918 17 C -0.549 4.549 18 H 0.062 0.938 19 C -0.161 4.161 20 N -0.536 5.536 21 Si 0.773 3.227 22 H -0.189 1.189 23 H -0.209 1.209 24 H -0.203 1.203 25 C -0.044 4.044 26 C -0.121 4.121 27 C -0.156 4.156 28 C -0.160 4.160 29 C -0.149 4.149 30 C -0.159 4.159 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.092 0.908 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.151 0.849 45 H 0.164 0.836 46 H 0.157 0.843 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.814 8.586 9.306 16.652 hybrid contribution 0.408 -0.821 -0.078 0.920 sum -10.407 7.765 9.228 15.930 Atomic orbital electron populations 1.23407 0.76220 1.05772 1.02457 1.86133 1.23513 1.25777 1.87789 1.18943 0.91117 0.85631 0.94370 1.21472 1.01703 0.90506 1.07725 1.21117 0.91507 0.99347 0.96459 1.20866 0.93630 0.86235 1.10607 1.98345 1.81074 1.28044 1.97276 1.20840 1.00113 0.90446 0.96856 1.19572 0.91911 0.95502 1.07039 1.20130 0.99109 0.92418 0.83932 1.47784 1.27542 1.45096 1.13227 1.21757 0.90070 0.91877 1.01022 1.21501 0.79211 0.79365 0.88319 1.90514 1.42883 1.35405 1.77789 1.17940 0.97500 0.93175 0.87331 0.91824 1.20598 1.22989 0.94040 1.17302 0.93831 1.25470 0.94833 1.01765 0.94077 1.70017 1.33880 1.34261 1.15409 0.85710 0.78948 0.80402 0.77598 1.18908 1.20940 1.20325 1.20211 0.94907 0.93452 0.95804 1.20845 0.94101 0.98421 0.98722 1.21326 1.00120 0.97983 0.96217 1.21253 0.95173 1.01174 0.98436 1.21278 0.94650 0.99147 0.99807 1.21115 0.99657 0.98345 0.96767 0.91870 0.86444 0.90824 0.81277 0.82212 0.86067 0.91085 0.87815 0.93557 0.91044 0.89826 0.92328 0.88892 0.84915 0.83632 0.84312 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.32 -7.03 8.45 -92.76 -0.78 -7.81 16 3 C 0.15 3.66 6.66 22.50 0.15 3.81 16 4 C -0.20 -3.89 9.04 22.36 0.20 -3.68 16 5 C -0.07 -1.40 9.82 22.28 0.22 -1.18 16 6 C -0.09 -2.35 6.32 22.33 0.14 -2.21 16 7 Cl -0.08 -1.97 28.95 -2.72 -0.08 -2.05 16 8 C -0.06 -1.99 9.45 22.28 0.21 -1.78 16 9 C -0.14 -4.21 5.47 -19.77 -0.11 -4.31 16 10 C 0.17 5.49 5.23 85.63 0.45 5.94 16 11 N -0.61 -23.60 2.86 -851.12 -2.43 -26.03 16 12 C 0.10 3.36 8.99 127.77 1.15 4.51 16 13 C 0.53 24.69 6.79 87.66 0.60 25.29 16 14 O -0.59 -29.65 14.79 -3.05 -0.05 -29.70 16 15 C 0.06 3.09 1.50 -13.03 -0.02 3.07 16 16 H 0.06 3.35 6.12 -2.39 -0.01 3.33 16 17 C -0.51 -26.87 6.54 25.60 0.17 -26.70 16 18 H 0.04 2.39 7.82 -2.91 -0.02 2.37 16 19 C 0.04 2.10 5.31 84.66 0.45 2.55 16 20 N -0.90 -47.75 12.87 21.45 0.28 -47.47 16 21 Si 0.95 41.34 29.54 68.60 2.03 43.37 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 C -0.04 -2.11 4.51 -19.87 -0.09 -2.20 16 26 C -0.10 -4.89 8.04 22.27 0.18 -4.72 16 27 C -0.14 -5.52 10.05 22.27 0.22 -5.30 16 28 C -0.14 -5.11 10.05 22.27 0.22 -4.88 16 29 C -0.13 -4.98 10.05 22.27 0.22 -4.76 16 30 C -0.14 -6.37 9.67 22.27 0.22 -6.15 16 31 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 32 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 34 H 0.17 2.11 6.30 -2.91 -0.02 2.09 16 35 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 36 H 0.12 4.28 8.04 -2.91 -0.02 4.26 16 37 H 0.07 2.53 7.32 -2.39 -0.02 2.51 16 38 H 0.10 2.90 7.62 -2.39 -0.02 2.88 16 39 H 0.05 1.55 7.92 -2.38 -0.02 1.53 16 40 H 0.07 3.00 5.50 -2.39 -0.01 2.99 16 41 H 0.08 2.44 7.92 -2.39 -0.02 2.42 16 42 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 43 H 0.09 4.69 7.76 -2.91 -0.02 4.67 16 44 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 45 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 46 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 47 H 0.11 4.70 7.96 -2.91 -0.02 4.68 16 Total: -1.00 -66.16 406.34 5.64 -60.51 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.99 Total: 30.59 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 5.69 Total: -21.41 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -2.16 Total: -73.50 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.83 Total: -37.51 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.08 Total: -2.05 kcal Total: -66.16 5.64 -60.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095465975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.129 kcal (2) G-P(sol) polarization free energy of solvation -66.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds