Wall clock time and date at job start Tue Mar 31 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47221 * 2 1 4 4 C 1.50694 * 109.47455 * 239.99570 * 2 1 3 5 5 H 1.08000 * 120.00229 * 240.00090 * 4 2 1 6 6 C 1.37878 * 120.00105 * 59.99919 * 4 2 1 7 7 N 1.31519 * 119.99923 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00294 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47007 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47239 * 120.00144 * 8 6 4 11 11 H 1.48505 * 109.46909 * 239.99864 * 8 6 4 12 12 N 1.46501 * 109.47107 * 119.99611 * 2 1 3 13 13 C 1.46498 * 120.00227 * 59.99848 * 12 2 1 14 14 S 1.65602 * 119.99994 * 240.00006 * 12 2 1 15 15 O 1.42095 * 106.40324 * 23.54036 * 14 12 2 16 16 O 1.42100 * 106.39877 * 156.45849 * 14 12 2 17 17 N 1.65598 * 107.22000 * 269.99888 * 14 12 2 18 18 C 1.46924 * 120.63061 * 90.00172 * 17 14 12 19 19 C 1.53192 * 108.77532 * 233.58940 * 18 17 14 20 20 C 1.53041 * 109.31072 * 305.36222 * 19 18 17 21 21 H 1.09003 * 109.46117 * 301.34694 * 20 19 18 22 22 C 1.53001 * 109.46386 * 181.37568 * 20 19 18 23 23 F 1.39894 * 109.46912 * 57.39665 * 22 20 19 24 24 F 1.39897 * 109.47314 * 177.40135 * 22 20 19 25 25 F 1.39907 * 109.46715 * 297.40234 * 22 20 19 26 26 C 1.53043 * 109.54012 * 61.36513 * 20 19 18 27 27 C 1.53004 * 109.49674 * 58.58732 * 26 20 19 28 28 C 1.52999 * 109.49886 * 178.68461 * 26 20 19 29 29 C 1.46931 * 120.63083 * 269.72227 * 17 14 12 30 30 H 1.09004 * 109.46650 * 60.00786 * 1 2 3 31 31 H 1.09004 * 109.46944 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47043 * 300.00042 * 1 2 3 33 33 H 0.96991 * 120.00430 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47220 * 270.00722 * 13 12 2 35 35 H 1.08994 * 109.47408 * 149.99646 * 13 12 2 36 36 H 1.09006 * 109.46849 * 29.99941 * 13 12 2 37 37 H 1.09003 * 109.58792 * 353.36775 * 18 17 14 38 38 H 1.08998 * 109.58855 * 113.80096 * 18 17 14 39 39 H 1.09002 * 109.50357 * 65.31299 * 19 18 17 40 40 H 1.09001 * 109.49724 * 185.38076 * 19 18 17 41 41 H 1.08995 * 109.47043 * 73.93205 * 27 26 20 42 42 H 1.09000 * 109.47337 * 193.93768 * 27 26 20 43 43 H 1.09009 * 109.46881 * 313.93622 * 27 26 20 44 44 H 1.08992 * 109.47022 * 50.14240 * 28 26 20 45 45 H 1.09006 * 109.47072 * 170.14679 * 28 26 20 46 46 H 1.09000 * 109.46783 * 290.13643 * 28 26 20 47 47 H 1.08996 * 109.58251 * 246.20182 * 29 17 14 48 48 H 1.09001 * 109.58372 * 6.62241 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3215 -1.1206 -4.0078 9 1 3.1466 -2.2872 -3.6036 10 1 1.1663 -1.5870 -4.8160 11 1 3.1468 -0.1876 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4282 14 16 2.9704 0.1143 2.2862 15 8 2.6904 1.4974 2.1192 16 8 2.8227 -0.5644 3.5259 17 7 4.5438 -0.1041 1.8181 18 6 5.1880 0.8400 0.8950 19 6 5.7725 0.0557 -0.2841 20 6 6.7022 -1.0379 0.2467 21 1 7.4972 -0.5833 0.8379 22 6 7.3146 -1.8015 -0.9292 23 9 7.9950 -0.9070 -1.7623 24 9 8.2097 -2.7620 -0.4462 25 9 6.2988 -2.4335 -1.6544 26 6 5.9051 -2.0064 1.1235 27 6 4.7675 -2.6190 0.3040 28 6 6.8285 -3.1176 1.6270 29 6 5.3239 -1.2423 2.3228 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.7088 1.1610 -3.4844 34 1 0.7376 -2.1442 1.9994 35 1 2.4629 -2.5817 1.9865 36 1 1.5295 -2.5968 0.4710 37 1 4.4504 1.5542 0.5288 38 1 5.9871 1.3701 1.4132 39 1 4.9633 -0.4001 -0.8547 40 1 6.3355 0.7318 -0.9275 41 1 5.1751 -3.3523 -0.3919 42 1 4.0596 -3.1076 0.9734 43 1 4.2575 -1.8333 -0.2536 44 1 7.7263 -2.6759 2.0592 45 1 6.3106 -3.7044 2.3858 46 1 7.1061 -3.7643 0.7946 47 1 6.1337 -0.8785 2.9551 48 1 4.6758 -1.9025 2.8993 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225754407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:30 Heat of formation + Delta-G solvation = -223.702947 kcal Electronic energy + Delta-G solvation = -37336.686760 eV Core-core repulsion = 32331.722665 eV Total energy + Delta-G solvation = -5004.964094 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 372.148 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -50.11458 -47.58736 -47.49856 -39.46743 -36.82467 -36.18480 -35.31465 -34.13875 -32.64255 -32.37516 -29.12448 -27.89981 -27.22459 -25.92933 -25.51212 -25.17501 -23.04048 -22.15484 -20.74537 -19.30308 -18.68858 -18.30301 -18.15729 -17.38406 -16.99560 -16.60922 -16.44496 -15.83260 -15.00596 -14.92953 -14.64411 -14.54682 -14.25959 -14.22464 -13.94734 -13.81102 -13.66602 -13.58131 -13.51038 -13.37628 -13.07848 -12.80305 -12.73220 -12.24215 -12.02517 -11.88833 -11.82590 -11.68937 -11.62100 -11.44555 -11.31070 -11.22631 -11.19794 -11.05091 -10.97650 -10.88754 -10.84806 -10.52822 -10.42163 -10.31271 -10.14803 -9.99625 -9.27686 -8.79700 -8.51877 -7.96822 -6.13384 -4.21766 1.14355 2.83958 3.21324 3.31414 3.32191 3.38389 3.83602 3.99770 4.06357 4.09440 4.32494 4.56347 4.66071 4.85791 4.90776 5.07228 5.12875 5.17784 5.26343 5.29725 5.47888 5.52123 5.60803 5.65806 5.72269 5.79989 5.82417 5.98276 6.07503 6.12990 6.15200 6.16359 6.27176 6.34093 6.44133 6.60296 6.73969 6.80067 6.85470 6.90218 7.10410 7.45980 7.60751 7.74901 8.02057 8.22499 8.82706 9.45363 10.91388 Molecular weight = 372.15amu Principal moments of inertia in cm(-1) A = 0.008813 B = 0.006268 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.375488 B = 4465.959181 C = 6412.565312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.269 3.731 3 H 0.057 0.943 4 C -0.525 4.525 5 H 0.070 0.930 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.885 3.115 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.988 5.988 13 C 0.107 3.893 14 S 2.779 3.221 15 O -0.978 6.978 16 O -0.996 6.996 17 N -1.007 6.007 18 C 0.135 3.865 19 C -0.144 4.144 20 C -0.116 4.116 21 H 0.109 0.891 22 C 0.453 3.547 23 F -0.187 7.187 24 F -0.185 7.185 25 F -0.172 7.172 26 C -0.074 4.074 27 C -0.175 4.175 28 C -0.155 4.155 29 C 0.142 3.858 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.010 0.990 33 H 0.263 0.737 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.877 -5.426 6.099 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.564 4.564 5 H 0.088 0.912 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.713 3.287 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.830 5.830 13 C -0.040 4.040 14 S 2.789 3.211 15 O -0.962 6.962 16 O -0.980 6.980 17 N -0.844 5.844 18 C 0.010 3.990 19 C -0.183 4.183 20 C -0.136 4.136 21 H 0.127 0.873 22 C 0.399 3.601 23 F -0.169 7.169 24 F -0.167 7.167 25 F -0.153 7.153 26 C -0.076 4.076 27 C -0.232 4.232 28 C -0.213 4.213 29 C 0.015 3.985 30 H 0.110 0.890 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.500 -4.805 6.710 14.155 hybrid contribution 0.616 -0.872 -1.575 1.903 sum 12.116 -5.677 5.134 14.331 Atomic orbital electron populations 1.22052 0.98079 0.99627 1.00662 1.18719 0.91821 0.92604 0.80249 0.92525 1.21469 1.31861 1.13210 0.89889 0.91222 1.24880 0.94897 0.94864 0.98830 1.69884 1.36113 1.22595 1.23678 0.86639 0.78761 0.79998 0.83316 1.19379 1.21093 1.20985 1.57754 1.64172 1.21297 1.39787 1.21244 0.98774 0.82124 1.01824 1.01983 0.72368 0.73481 0.73257 1.93577 1.83629 1.32248 1.86795 1.93531 1.85907 1.76338 1.42263 1.58339 1.30543 1.35325 1.60169 1.21231 0.98392 0.90618 0.88779 1.22179 1.00062 0.96835 0.99205 1.22465 1.00263 0.97333 0.93500 0.87254 1.20715 0.76294 0.78116 0.84999 1.93159 1.81131 1.68041 1.74561 1.93116 1.70031 1.65830 1.87687 1.93196 1.59181 1.82987 1.79927 1.21008 0.96287 0.94464 0.95798 1.22662 0.97343 1.02855 1.00320 1.22218 0.98719 0.98094 1.02225 1.21447 0.96105 0.87059 0.93850 0.88963 0.94904 0.97042 0.92720 0.94041 0.93269 0.90113 0.88027 0.91551 0.87520 0.89838 0.91489 0.92347 0.88515 0.92340 0.91953 0.91019 0.91257 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.97 37.16 0.33 -2.96 16 2 C 0.27 6.06 2.62 -69.08 -0.18 5.88 16 3 H 0.06 1.42 6.91 -51.93 -0.36 1.06 16 4 C -0.53 -12.21 7.87 -34.44 -0.27 -12.49 16 5 H 0.07 1.56 5.31 -52.49 -0.28 1.28 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.88 -23.14 11.32 55.43 0.63 -22.52 16 8 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 9 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.99 -18.92 3.12 -115.86 -0.36 -19.28 16 13 C 0.11 1.78 8.69 59.85 0.52 2.30 16 14 S 2.78 51.56 6.06 -107.50 -0.65 50.91 16 15 O -0.98 -21.18 15.42 -57.17 -0.88 -22.06 16 16 O -1.00 -19.40 15.92 -57.17 -0.91 -20.31 16 17 N -1.01 -14.87 3.03 -113.27 -0.34 -15.22 16 18 C 0.14 1.86 6.37 -3.71 -0.02 1.84 16 19 C -0.14 -1.92 4.81 -26.61 -0.13 -2.05 16 20 C -0.12 -1.34 1.66 -90.58 -0.15 -1.49 16 21 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 22 C 0.45 5.78 2.59 37.16 0.10 5.88 16 23 F -0.19 -2.50 16.67 2.25 0.04 -2.46 16 24 F -0.19 -2.22 13.94 2.25 0.03 -2.19 16 25 F -0.17 -2.57 13.37 2.25 0.03 -2.54 16 26 C -0.07 -0.86 0.55 -154.16 -0.08 -0.94 16 27 C -0.18 -2.41 6.87 37.16 0.26 -2.16 16 28 C -0.15 -1.51 7.26 37.16 0.27 -1.24 16 29 C 0.14 1.72 5.06 -3.48 -0.02 1.70 16 30 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 31 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.71 6.39 -51.93 -0.33 0.38 16 36 H 0.08 1.37 7.02 -51.93 -0.36 1.00 16 37 H 0.10 1.60 7.13 -51.93 -0.37 1.23 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.73 5.83 -51.93 -0.30 1.42 16 40 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 41 H 0.07 0.92 5.89 -51.93 -0.31 0.62 16 42 H 0.06 0.76 6.07 -51.93 -0.32 0.45 16 43 H 0.10 1.58 3.53 -51.92 -0.18 1.39 16 44 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 45 H 0.06 0.56 8.12 -51.93 -0.42 0.13 16 46 H 0.07 0.75 5.89 -51.93 -0.31 0.44 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.09 1.15 7.07 -51.93 -0.37 0.78 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -28.36 372.06 -8.00 -36.36 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.69 Total: 3.17 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 0.52 Total: -4.13 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.08 Total: -57.01 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.79 Total: -42.37 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.10 Total: -7.19 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 51.56 SS G_CDS: -0.65 Total: 50.91 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.36 -8.00 -36.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225754407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.339 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds