Wall clock time and date at job start Tue Mar 31 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47221 * 2 1 4 4 C 1.50694 * 109.47455 * 239.99570 * 2 1 3 5 5 H 1.08000 * 120.00229 * 240.00090 * 4 2 1 6 6 C 1.37878 * 120.00105 * 59.99919 * 4 2 1 7 7 N 1.31519 * 119.99923 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00294 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47007 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47239 * 120.00144 * 8 6 4 11 11 H 1.48505 * 109.46909 * 239.99864 * 8 6 4 12 12 N 1.46501 * 109.47107 * 119.99611 * 2 1 3 13 13 C 1.46498 * 120.00227 * 59.99848 * 12 2 1 14 14 S 1.65602 * 119.99994 * 240.00006 * 12 2 1 15 15 O 1.42095 * 106.40324 * 23.54036 * 14 12 2 16 16 O 1.42100 * 106.39877 * 156.45849 * 14 12 2 17 17 N 1.65598 * 107.22000 * 269.99888 * 14 12 2 18 18 C 1.46924 * 120.63061 * 90.00172 * 17 14 12 19 19 C 1.53192 * 108.77532 * 233.58940 * 18 17 14 20 20 C 1.53041 * 109.31072 * 305.36222 * 19 18 17 21 21 H 1.09003 * 109.46117 * 301.34694 * 20 19 18 22 22 C 1.53001 * 109.46386 * 181.37568 * 20 19 18 23 23 F 1.39894 * 109.46912 * 57.39665 * 22 20 19 24 24 F 1.39897 * 109.47314 * 177.40135 * 22 20 19 25 25 F 1.39907 * 109.46715 * 297.40234 * 22 20 19 26 26 C 1.53043 * 109.54012 * 61.36513 * 20 19 18 27 27 C 1.53004 * 109.49674 * 58.58732 * 26 20 19 28 28 C 1.52999 * 109.49886 * 178.68461 * 26 20 19 29 29 C 1.46931 * 120.63083 * 269.72227 * 17 14 12 30 30 H 1.09004 * 109.46650 * 60.00786 * 1 2 3 31 31 H 1.09004 * 109.46944 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47043 * 300.00042 * 1 2 3 33 33 H 0.96991 * 120.00430 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47220 * 270.00722 * 13 12 2 35 35 H 1.08994 * 109.47408 * 149.99646 * 13 12 2 36 36 H 1.09006 * 109.46849 * 29.99941 * 13 12 2 37 37 H 1.09003 * 109.58792 * 353.36775 * 18 17 14 38 38 H 1.08998 * 109.58855 * 113.80096 * 18 17 14 39 39 H 1.09002 * 109.50357 * 65.31299 * 19 18 17 40 40 H 1.09001 * 109.49724 * 185.38076 * 19 18 17 41 41 H 1.08995 * 109.47043 * 73.93205 * 27 26 20 42 42 H 1.09000 * 109.47337 * 193.93768 * 27 26 20 43 43 H 1.09009 * 109.46881 * 313.93622 * 27 26 20 44 44 H 1.08992 * 109.47022 * 50.14240 * 28 26 20 45 45 H 1.09006 * 109.47072 * 170.14679 * 28 26 20 46 46 H 1.09000 * 109.46783 * 290.13643 * 28 26 20 47 47 H 1.08996 * 109.58251 * 246.20182 * 29 17 14 48 48 H 1.09001 * 109.58372 * 6.62241 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3215 -1.1206 -4.0078 9 1 3.1466 -2.2872 -3.6036 10 1 1.1663 -1.5870 -4.8160 11 1 3.1468 -0.1876 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4282 14 16 2.9704 0.1143 2.2862 15 8 2.6904 1.4974 2.1192 16 8 2.8227 -0.5644 3.5259 17 7 4.5438 -0.1041 1.8181 18 6 5.1880 0.8400 0.8950 19 6 5.7725 0.0557 -0.2841 20 6 6.7022 -1.0379 0.2467 21 1 7.4972 -0.5833 0.8379 22 6 7.3146 -1.8015 -0.9292 23 9 7.9950 -0.9070 -1.7623 24 9 8.2097 -2.7620 -0.4462 25 9 6.2988 -2.4335 -1.6544 26 6 5.9051 -2.0064 1.1235 27 6 4.7675 -2.6190 0.3040 28 6 6.8285 -3.1176 1.6270 29 6 5.3239 -1.2423 2.3228 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.7088 1.1610 -3.4844 34 1 0.7376 -2.1442 1.9994 35 1 2.4629 -2.5817 1.9865 36 1 1.5295 -2.5968 0.4710 37 1 4.4504 1.5542 0.5288 38 1 5.9871 1.3701 1.4132 39 1 4.9633 -0.4001 -0.8547 40 1 6.3355 0.7318 -0.9275 41 1 5.1751 -3.3523 -0.3919 42 1 4.0596 -3.1076 0.9734 43 1 4.2575 -1.8333 -0.2536 44 1 7.7263 -2.6759 2.0592 45 1 6.3106 -3.7044 2.3858 46 1 7.1061 -3.7643 0.7946 47 1 6.1337 -0.8785 2.9551 48 1 4.6758 -1.9025 2.8993 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225754407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:29 Heat of formation + Delta-G solvation = -240.813234 kcal Electronic energy + Delta-G solvation = -37337.428717 eV Core-core repulsion = 32331.722665 eV Total energy + Delta-G solvation = -5005.706052 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 372.148 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -51.12358 -48.57144 -48.55046 -40.47977 -38.37952 -37.83812 -36.87783 -35.21415 -34.44629 -33.40251 -30.87964 -28.94311 -28.16095 -27.25065 -26.89805 -26.85426 -24.09207 -23.18077 -22.47850 -20.36362 -19.94534 -19.31808 -19.20434 -18.76056 -18.49619 -18.27828 -17.66659 -17.25048 -16.52420 -16.06108 -15.76318 -15.73378 -15.38345 -15.24489 -15.14739 -15.00068 -14.86598 -14.77719 -14.66061 -14.61007 -14.44909 -14.24477 -13.83701 -13.69076 -13.44375 -13.36864 -13.17727 -13.01209 -12.96274 -12.80933 -12.74287 -12.64795 -12.64428 -12.45122 -12.24833 -12.19727 -12.08087 -12.04568 -11.94293 -11.66283 -11.42176 -11.35383 -10.94990 -10.45652 -9.94834 -9.56158 -8.04708 -6.15819 -0.30098 1.41366 1.48117 1.55351 1.86130 1.99069 2.46504 2.60245 2.88701 3.02586 3.12901 3.25251 3.36414 3.59764 3.78371 3.91577 3.99730 4.13574 4.17809 4.30017 4.36864 4.52851 4.61838 4.69494 4.72552 4.77697 4.83580 4.83959 4.90000 5.01070 5.03082 5.04579 5.10578 5.16634 5.21271 5.25512 5.29109 5.31381 5.45806 5.56583 5.64019 5.75477 5.83477 5.95105 6.16984 6.36177 6.95434 7.53232 9.00206 Molecular weight = 372.15amu Principal moments of inertia in cm(-1) A = 0.008813 B = 0.006268 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.375488 B = 4465.959181 C = 6412.565312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.278 3.722 3 H 0.026 0.974 4 C -0.510 4.510 5 H 0.079 0.921 6 C 0.025 3.975 7 N -0.917 5.917 8 Si 0.935 3.065 9 H -0.263 1.263 10 H -0.289 1.289 11 H -0.289 1.289 12 N -0.993 5.993 13 C 0.102 3.898 14 S 2.790 3.210 15 O -1.015 7.015 16 O -1.004 7.004 17 N -1.000 6.000 18 C 0.134 3.866 19 C -0.141 4.141 20 C -0.110 4.110 21 H 0.143 0.857 22 C 0.452 3.548 23 F -0.192 7.192 24 F -0.178 7.178 25 F -0.188 7.188 26 C -0.069 4.069 27 C -0.176 4.176 28 C -0.150 4.150 29 C 0.135 3.865 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.103 0.897 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.246 -6.844 7.422 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.173 3.827 3 H 0.044 0.956 4 C -0.550 4.550 5 H 0.097 0.903 6 C -0.174 4.174 7 N -0.557 5.557 8 Si 0.763 3.237 9 H -0.187 1.187 10 H -0.215 1.215 11 H -0.215 1.215 12 N -0.835 5.835 13 C -0.043 4.043 14 S 2.801 3.199 15 O -0.999 6.999 16 O -0.988 6.988 17 N -0.840 5.840 18 C 0.008 3.992 19 C -0.180 4.180 20 C -0.129 4.129 21 H 0.161 0.839 22 C 0.398 3.602 23 F -0.173 7.173 24 F -0.160 7.160 25 F -0.170 7.170 26 C -0.071 4.071 27 C -0.233 4.233 28 C -0.208 4.208 29 C 0.010 3.990 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.121 0.879 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.869 -6.254 8.047 17.211 hybrid contribution -0.070 -0.458 -1.946 2.001 sum 13.799 -6.712 6.101 16.513 Atomic orbital electron populations 1.21951 0.98424 0.99855 0.99682 1.18344 0.91489 0.91379 0.81463 0.95629 1.21689 1.30572 1.12796 0.89921 0.90299 1.25464 0.95408 0.95458 1.01097 1.70005 1.37773 1.24080 1.23814 0.85846 0.77988 0.79132 0.80750 1.18673 1.21531 1.21513 1.57636 1.65093 1.22181 1.38547 1.21401 1.00066 0.80806 1.02063 1.01452 0.73063 0.72477 0.72946 1.93528 1.84629 1.34535 1.87200 1.93512 1.86470 1.76254 1.42579 1.58044 1.29182 1.36485 1.60294 1.21338 0.98449 0.90214 0.89150 1.22080 0.99598 0.97473 0.98871 1.22504 1.00651 0.96593 0.93189 0.83925 1.20889 0.76097 0.78162 0.85046 1.93152 1.81179 1.68164 1.74839 1.93132 1.69736 1.65606 1.87490 1.93167 1.60014 1.83350 1.80441 1.20977 0.95896 0.94970 0.95229 1.22616 0.98184 1.02010 1.00450 1.22177 0.99018 0.97303 1.02264 1.21766 0.96676 0.86189 0.94340 0.91328 0.93950 0.96637 0.93065 0.93483 0.90817 0.90546 0.90838 0.87933 0.90740 0.88797 0.91842 0.91975 0.91170 0.90408 0.90886 0.91742 0.87941 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.48 8.97 71.98 0.65 -5.83 16 2 C 0.28 12.77 2.62 44.24 0.12 12.88 16 3 H 0.03 1.35 6.91 -2.39 -0.02 1.34 16 4 C -0.51 -24.03 7.87 25.60 0.20 -23.83 16 5 H 0.08 3.53 5.31 -2.91 -0.02 3.52 16 6 C 0.03 1.27 5.30 84.65 0.45 1.72 16 7 N -0.92 -49.42 11.32 21.45 0.24 -49.17 16 8 Si 0.94 40.94 29.54 68.60 2.03 42.97 16 9 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 12 N -0.99 -37.86 3.12 -520.46 -1.62 -39.49 16 13 C 0.10 3.28 8.69 127.77 1.11 4.39 16 14 S 2.79 101.77 6.06 -56.49 -0.34 101.43 16 15 O -1.01 -44.60 15.42 -128.00 -1.97 -46.58 16 16 O -1.00 -37.49 15.92 -128.00 -2.04 -39.53 16 17 N -1.00 -27.70 3.03 -512.28 -1.55 -29.25 16 18 C 0.13 3.47 6.37 86.36 0.55 4.02 16 19 C -0.14 -3.55 4.81 30.67 0.15 -3.41 16 20 C -0.11 -2.21 1.66 -10.77 -0.02 -2.23 16 21 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 22 C 0.45 10.49 2.59 71.98 0.19 10.68 16 23 F -0.19 -4.72 16.67 44.97 0.75 -3.97 16 24 F -0.18 -3.75 13.94 44.97 0.63 -3.12 16 25 F -0.19 -5.41 13.37 44.97 0.60 -4.81 16 26 C -0.07 -1.39 0.55 -51.96 -0.03 -1.42 16 27 C -0.18 -4.54 6.87 71.98 0.49 -4.05 16 28 C -0.15 -2.32 7.26 71.98 0.52 -1.80 16 29 C 0.14 2.81 5.06 86.51 0.44 3.25 16 30 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 31 H 0.04 1.82 7.67 -2.38 -0.02 1.81 16 32 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.98 6.39 -2.39 -0.02 1.96 16 36 H 0.08 2.51 7.02 -2.38 -0.02 2.50 16 37 H 0.07 2.36 7.13 -2.39 -0.02 2.34 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.40 5.83 -2.39 -0.01 2.39 16 40 H 0.09 2.13 7.70 -2.39 -0.02 2.11 16 41 H 0.06 1.66 5.89 -2.39 -0.01 1.65 16 42 H 0.06 1.50 6.07 -2.39 -0.01 1.48 16 43 H 0.07 2.23 3.53 -2.38 -0.01 2.22 16 44 H 0.08 0.94 8.11 -2.39 -0.02 0.92 16 45 H 0.07 1.00 8.12 -2.38 -0.02 0.98 16 46 H 0.06 1.13 5.89 -2.39 -0.01 1.11 16 47 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.09 1.98 7.07 -2.39 -0.02 1.96 16 Total: -1.00 -62.15 372.06 2.54 -59.61 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 1.00 Total: 17.53 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 4.82 Total: -5.62 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -2.93 Total: -117.91 kcal Atomic # 8 Polarization: -82.10 SS G_CDS: -4.01 Total: -86.11 kcal Atomic # 9 Polarization: -13.88 SS G_CDS: 1.98 Total: -11.90 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: 101.77 SS G_CDS: -0.34 Total: 101.43 kcal Total: -62.15 2.54 -59.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225754407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.202 kcal (2) G-P(sol) polarization free energy of solvation -62.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds