Wall clock time and date at job start Tue Mar 31 2020 05:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35960 * 116.99631 * 2 1 4 4 C 1.38241 * 120.15895 * 359.97438 * 3 2 1 5 5 C 1.38771 * 120.59800 * 180.02562 * 4 3 2 6 6 C 1.36630 * 120.57384 * 0.02774 * 5 4 3 7 7 C 1.39736 * 119.86178 * 359.95414 * 6 5 4 8 8 C 1.46479 * 133.99022 * 180.02562 * 7 6 5 9 9 C 1.50699 * 126.49043 * 359.97438 * 8 7 6 10 10 H 1.08995 * 109.47036 * 327.80186 * 9 8 7 11 11 C 1.50703 * 109.47191 * 87.80511 * 9 8 7 12 12 O 1.20817 * 120.00310 * 89.94893 * 11 9 8 13 13 O 1.34230 * 119.99484 * 269.95297 * 11 9 8 14 14 N 1.46901 * 109.47055 * 207.80074 * 9 8 7 15 15 C 1.46954 * 111.00107 * 186.39764 * 14 9 8 16 16 C 1.53052 * 109.36742 * 176.81383 * 15 14 9 17 17 N 1.46950 * 109.36429 * 58.40189 * 16 15 14 18 18 C 1.46901 * 110.99912 * 176.81457 * 17 16 15 19 19 C 1.50699 * 109.47253 * 59.39742 * 18 17 16 20 20 H 1.08000 * 119.99828 * 355.50470 * 19 18 17 21 21 C 1.37876 * 120.00182 * 175.50609 * 19 18 17 22 22 N 1.31522 * 119.99640 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00242 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47272 * 90.00305 * 23 21 19 25 25 H 1.48499 * 109.47208 * 210.00206 * 23 21 19 26 26 H 1.48497 * 109.47016 * 329.99652 * 23 21 19 27 27 C 1.46954 * 110.87845 * 300.68173 * 17 16 15 28 28 C 1.46950 * 110.99912 * 62.60049 * 14 9 8 29 29 C 1.34263 * 107.02088 * 180.02562 * 8 7 6 30 30 N 1.36767 * 109.91646 * 359.97438 * 29 8 7 31 31 H 0.96997 * 125.07795 * 180.26286 * 30 29 8 32 32 C 1.37831 * 109.84412 * 0.02562 * 30 29 8 33 33 H 1.08997 * 109.47380 * 59.99563 * 1 2 3 34 34 H 1.08995 * 109.46686 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46839 * 299.99295 * 1 2 3 36 36 H 1.08003 * 119.69959 * 0.04534 * 4 3 2 37 37 H 1.07994 * 119.71276 * 179.97438 * 5 4 3 38 38 H 1.08001 * 120.07064 * 179.97438 * 6 5 4 39 39 H 0.96707 * 116.99589 * 179.97438 * 13 11 9 40 40 H 1.09003 * 109.49103 * 296.78348 * 15 14 9 41 41 H 1.09003 * 109.48750 * 56.84724 * 15 14 9 42 42 H 1.09003 * 109.48801 * 298.42924 * 16 15 14 43 43 H 1.08999 * 109.50618 * 178.38210 * 16 15 14 44 44 H 1.09000 * 109.46957 * 179.40068 * 18 17 16 45 45 H 1.09000 * 109.47152 * 299.39652 * 18 17 16 46 46 H 0.97002 * 119.99687 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.49103 * 299.35048 * 27 17 16 48 48 H 1.09007 * 109.48609 * 179.29161 * 27 17 16 49 49 H 1.09000 * 109.49514 * 303.15167 * 28 14 9 50 50 H 1.09000 * 109.49112 * 63.20107 * 28 14 9 51 51 H 1.07998 * 125.04297 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2965 2.3729 -0.0005 5 6 1.9169 3.6142 -0.0011 6 6 3.2798 3.7099 -0.0017 7 6 4.0588 2.5497 -0.0007 8 6 5.5008 2.2926 -0.0005 9 6 6.5958 3.3280 -0.0018 10 1 6.2623 4.2087 -0.5505 11 6 6.9235 3.7144 1.4175 12 8 7.7726 3.1091 2.0277 13 8 6.2719 4.7311 2.0036 14 7 7.7933 2.7734 -0.6472 15 6 8.9294 3.6984 -0.5328 16 6 10.1740 3.0520 -1.1456 17 7 9.9083 2.7203 -2.5523 18 6 11.1058 2.1657 -3.1977 19 6 11.5382 0.9199 -2.4683 20 1 11.0240 0.6148 -1.5689 21 6 12.5903 0.1697 -2.9491 22 7 13.2168 0.5416 -4.0441 23 14 13.1259 -1.3749 -2.0454 24 1 12.3761 -2.5427 -2.5738 25 1 14.5813 -1.5879 -2.2489 26 1 12.8461 -1.2219 -0.5951 27 6 8.7722 1.7952 -2.6667 28 6 7.5276 2.4417 -2.0539 29 6 5.6623 0.9597 0.0000 30 7 4.4418 0.3425 0.0006 31 1 4.3026 -0.6174 0.0047 32 6 3.4392 1.2883 0.0000 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3632 -1.0276 0.0005 35 1 -0.3633 0.5137 0.8901 36 1 0.2181 2.3136 -0.0002 37 1 1.3172 4.5123 -0.0019 38 1 3.7542 4.6801 -0.0025 39 1 6.5164 4.9417 2.9153 40 1 8.7008 4.6226 -1.0637 41 1 9.1144 3.9189 0.5185 42 1 10.4186 2.1422 -0.5973 43 1 11.0113 3.7474 -1.0878 44 1 10.8783 1.9191 -4.2348 45 1 11.9089 2.9020 -3.1670 46 1 13.9572 0.0139 -4.3821 47 1 9.0007 0.8711 -2.1358 48 1 8.5872 1.5747 -3.7181 49 1 6.6905 1.7459 -2.1117 50 1 7.2827 3.3515 -2.6021 51 1 6.6147 0.4504 0.0006 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020721114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:49 Heat of formation + Delta-G solvation = -40.972991 kcal Electronic energy + Delta-G solvation = -34910.130766 eV Core-core repulsion = 30389.910410 eV Total energy + Delta-G solvation = -4520.220356 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 373.183 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.72527 -40.36549 -39.24189 -38.44530 -36.48331 -36.10551 -35.24258 -32.69973 -31.72167 -30.35552 -29.88343 -29.53552 -27.96358 -27.41085 -26.41584 -24.40570 -23.07992 -22.75791 -21.98764 -21.93052 -21.36864 -19.73716 -19.05806 -18.45569 -18.00025 -17.36832 -16.57315 -16.46640 -16.26257 -16.11143 -15.83688 -15.48904 -15.19978 -14.90033 -14.52187 -14.44764 -14.20615 -14.15089 -13.94309 -13.59029 -13.43503 -13.12130 -12.99432 -12.80069 -12.38082 -12.21081 -12.12341 -11.91527 -11.75640 -11.54231 -11.47371 -11.33284 -11.31157 -11.07427 -10.87251 -10.77671 -10.55238 -10.46814 -10.27903 -10.02770 -9.80911 -9.49626 -9.31237 -8.41305 -8.39582 -8.18818 -7.59754 -7.13976 -5.99582 -4.08173 0.98009 1.38833 2.15363 2.48264 2.89954 2.96476 3.04769 3.29802 3.36854 3.41236 3.68430 4.05304 4.43978 4.54624 4.62309 4.73123 4.79534 4.83685 4.88220 5.04287 5.07098 5.14049 5.16703 5.27220 5.30915 5.37142 5.45687 5.49930 5.62712 5.68467 5.76450 5.83760 5.92946 5.97871 6.05731 6.16405 6.31011 6.35154 6.46553 6.50171 6.57887 6.63771 6.69719 6.80800 6.88569 7.13705 7.18088 7.18580 7.34433 7.36707 7.56126 7.93469 7.97413 8.08314 8.30079 8.34114 9.02712 9.58676 11.05464 Molecular weight = 373.18amu Principal moments of inertia in cm(-1) A = 0.011640 B = 0.002470 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.935342 B =11331.039559 C =12506.237046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.325 6.325 3 C 0.122 3.878 4 C -0.201 4.201 5 C -0.106 4.106 6 C -0.104 4.104 7 C -0.055 4.055 8 C -0.188 4.188 9 C 0.180 3.820 10 H 0.076 0.924 11 C 0.486 3.514 12 O -0.491 6.491 13 O -0.518 6.518 14 N -0.517 5.517 15 C 0.051 3.949 16 C 0.068 3.932 17 N -0.544 5.544 18 C 0.187 3.813 19 C -0.547 4.547 20 H 0.060 0.940 21 C 0.064 3.936 22 N -0.892 5.892 23 Si 0.888 3.112 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.066 3.934 28 C 0.062 3.938 29 C 0.115 3.885 30 N -0.583 5.583 31 H 0.421 0.579 32 C 0.071 3.929 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.407 0.593 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.033 0.967 45 H 0.028 0.972 46 H 0.261 0.739 47 H 0.049 0.951 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.039 0.961 51 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.450 5.078 9.760 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.239 6.239 3 C 0.075 3.925 4 C -0.221 4.221 5 C -0.126 4.126 6 C -0.123 4.123 7 C -0.061 4.061 8 C -0.195 4.195 9 C 0.070 3.930 10 H 0.093 0.907 11 C 0.326 3.674 12 O -0.376 6.376 13 O -0.329 6.329 14 N -0.244 5.244 15 C -0.076 4.076 16 C -0.061 4.061 17 N -0.268 5.268 18 C 0.062 3.938 19 C -0.586 4.586 20 H 0.078 0.922 21 C -0.138 4.138 22 N -0.531 5.531 23 Si 0.716 3.284 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.063 4.063 28 C -0.065 4.065 29 C -0.015 4.015 30 N -0.185 5.185 31 H 0.259 0.741 32 C -0.035 4.035 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.265 0.735 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.057 0.943 51 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -26.080 4.438 9.393 28.072 hybrid contribution 0.281 -1.169 1.072 1.611 sum -25.798 3.268 10.465 28.031 Atomic orbital electron populations 1.23014 0.78188 1.03780 1.01425 1.86018 1.21598 1.26966 1.89343 1.17915 0.88174 0.84978 1.01417 1.20810 0.99374 0.91535 1.10397 1.20360 0.94243 0.96649 1.01315 1.20209 0.93002 0.96998 1.02089 1.18775 0.91853 0.91574 1.03856 1.19327 0.90247 0.92711 1.17255 1.19091 0.90040 0.95413 0.88470 0.90655 1.23284 0.77872 0.76523 0.89710 1.90731 1.30798 1.51438 1.64683 1.84537 1.63866 1.50529 1.34005 1.61955 1.02591 1.43494 1.16326 1.22415 0.91204 0.93428 1.00592 1.21871 0.94317 0.99839 0.90025 1.62705 1.07740 1.42761 1.13637 1.19725 0.86202 0.93292 0.94608 1.21783 1.16066 1.09817 1.10913 0.92205 1.24963 0.96331 0.97673 0.94867 1.69952 1.22375 1.39187 1.21599 0.86653 0.77771 0.83642 0.80326 1.20727 1.21243 1.19862 1.21915 0.89642 0.95118 0.99588 1.22313 0.98861 0.99833 0.85541 1.21930 0.88646 0.92812 0.98096 1.41794 1.04174 1.08585 1.63918 0.74126 1.17418 0.86983 0.89380 1.09757 0.92559 0.88414 0.92644 0.85410 0.85826 0.85661 0.73504 0.94559 0.90648 0.92984 0.91259 0.94870 0.95395 0.92892 0.93315 0.91185 0.90652 0.94297 0.79775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.33 -3.18 10.51 -19.61 -0.21 -3.39 16 3 C 0.12 1.32 6.70 -39.11 -0.26 1.06 16 4 C -0.20 -1.86 9.03 -39.38 -0.36 -2.22 16 5 C -0.11 -0.98 9.97 -39.97 -0.40 -1.38 16 6 C -0.10 -1.12 10.05 -39.60 -0.40 -1.52 16 7 C -0.06 -0.68 6.35 -105.15 -0.67 -1.35 16 8 C -0.19 -2.42 4.49 -102.71 -0.46 -2.88 16 9 C 0.18 2.41 2.48 -70.01 -0.17 2.24 16 10 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 11 C 0.49 6.61 6.34 36.01 0.23 6.84 16 12 O -0.49 -8.16 15.99 -18.74 -0.30 -8.46 16 13 O -0.52 -5.35 13.42 -39.26 -0.53 -5.88 16 14 N -0.52 -7.97 3.96 -229.28 -0.91 -8.88 16 15 C 0.05 0.85 5.20 -3.77 -0.02 0.83 16 16 C 0.07 1.36 5.24 -3.77 -0.02 1.34 16 17 N -0.54 -11.60 4.92 -235.91 -1.16 -12.76 16 18 C 0.19 4.80 5.14 -4.98 -0.03 4.77 16 19 C -0.55 -14.97 7.67 -34.44 -0.26 -15.23 16 20 H 0.06 1.64 5.81 -52.49 -0.31 1.34 16 21 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 23 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.07 1.27 5.32 -3.77 -0.02 1.25 16 28 C 0.06 0.96 5.29 -3.77 -0.02 0.94 16 29 C 0.11 1.40 9.96 -16.75 -0.17 1.23 16 30 N -0.58 -6.35 6.08 -10.57 -0.06 -6.42 16 31 H 0.42 3.62 8.96 -40.82 -0.37 3.26 16 32 C 0.07 0.86 7.22 -83.83 -0.61 0.25 16 33 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.26 7.66 -51.93 -0.40 -0.13 16 36 H 0.13 0.86 6.27 -52.48 -0.33 0.53 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.41 2.50 9.10 45.56 0.41 2.91 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.24 5.89 -51.93 -0.31 0.94 16 42 H 0.05 1.17 6.47 -51.93 -0.34 0.83 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.03 0.91 8.12 -51.93 -0.42 0.49 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.05 1.02 6.94 -51.93 -0.36 0.66 16 48 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 49 H 0.08 1.06 6.20 -51.93 -0.32 0.74 16 50 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.19 2.24 8.01 -52.49 -0.42 1.82 16 LS Contribution 409.23 15.07 6.17 6.17 Total: -1.00 -33.72 409.23 -10.50 -44.22 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.49 Total: 5.31 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.74 Total: -0.96 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -1.40 Total: -53.60 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.03 Total: -17.73 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.72 -10.50 -44.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020721114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.250 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds