Wall clock time and date at job start Tue Mar 31 2020 05:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 C 1.50699 * 109.47135 * 179.97438 * 4 3 2 6 6 O 1.20823 * 119.99840 * 0.02562 * 5 4 3 7 7 O 1.34223 * 119.99824 * 179.97438 * 5 4 3 8 8 C 1.45209 * 116.99883 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47150 * 180.02562 * 8 7 5 10 10 O 1.21284 * 120.00114 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99938 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99956 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47217 * 89.99847 * 12 11 9 14 14 H 1.08004 * 119.99905 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00438 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99729 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00278 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47112 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46835 * 119.99997 * 17 15 13 20 20 H 1.48501 * 109.47101 * 240.00118 * 17 15 13 21 21 C 1.46497 * 120.00335 * 359.97438 * 11 9 8 22 22 C 1.53004 * 109.47173 * 89.99839 * 21 11 9 23 23 C 1.47192 * 109.47079 * 180.02562 * 22 21 11 24 24 N 8.97099 * 159.06587 * 171.68953 * 3 1 2 25 25 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 26 26 C 1.38914 * 120.07317 * 359.97438 * 25 2 1 27 27 C 1.38100 * 119.92419 * 179.97438 * 26 25 2 28 28 C 1.38288 * 120.07489 * 359.97438 * 27 26 25 29 29 C 1.38283 * 120.14964 * 0.27921 * 28 27 26 30 30 C 1.38104 * 120.07445 * 359.44998 * 29 28 27 31 31 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 32 32 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 33 33 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 34 34 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 35 35 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 36 36 H 1.08996 * 109.47038 * 300.00136 * 4 3 2 37 37 H 1.08997 * 109.46498 * 60.00152 * 4 3 2 38 38 H 1.09007 * 109.46724 * 300.00268 * 8 7 5 39 39 H 1.08998 * 109.46982 * 60.00245 * 8 7 5 40 40 H 1.09002 * 109.47249 * 209.99493 * 12 11 9 41 41 H 1.08997 * 109.47384 * 330.00134 * 12 11 9 42 42 H 0.96993 * 119.99841 * 180.02562 * 16 15 13 43 43 H 1.08989 * 109.47493 * 210.00420 * 21 11 9 44 44 H 1.09006 * 109.46883 * 330.00846 * 21 11 9 45 45 H 1.09003 * 109.47184 * 300.00793 * 22 21 11 46 46 H 1.09002 * 109.46515 * 59.99964 * 22 21 11 47 47 H 1.07999 * 120.03435 * 359.97438 * 26 25 2 48 48 H 1.08000 * 119.95830 * 180.02562 * 27 26 25 49 49 H 1.08002 * 119.92149 * 179.97438 * 28 27 26 50 50 H 1.08001 * 119.96059 * 179.69879 * 29 28 27 51 51 H 1.07999 * 120.04050 * 180.27354 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2054 3.0160 -1.4424 6 8 3.5074 3.5391 -0.3960 7 8 3.5413 3.5970 -2.6048 8 6 4.2662 4.8529 -2.5288 9 6 4.5541 5.3518 -3.9213 10 8 4.1852 4.7118 -4.8832 11 7 5.2225 6.5087 -4.0979 12 6 5.5029 6.9935 -5.4516 13 6 4.3687 7.8704 -5.9161 14 1 3.5234 8.0485 -5.2679 15 6 4.4097 8.4446 -7.1690 16 7 5.4384 8.2266 -7.9589 17 14 3.0035 9.5310 -7.7450 18 1 1.9746 9.6163 -6.6776 19 1 3.5194 10.8910 -8.0444 20 1 2.3990 8.9499 -8.9706 21 6 5.6687 7.2816 -2.9361 22 6 7.0731 6.8291 -2.5313 23 6 7.5212 7.6052 -1.3636 24 7 7.8677 8.2051 -0.4633 25 6 2.1634 -1.2096 -0.0005 26 6 1.4704 -2.4135 -0.0005 27 6 2.1641 -3.6077 -0.0016 28 6 3.5470 -3.6058 -0.0032 29 6 4.2399 -2.4092 0.0021 30 6 3.5525 -1.2114 -0.0025 31 1 -0.3633 0.0000 1.0276 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8899 -0.5139 34 1 1.6084 2.0284 0.5139 35 1 3.1499 1.1384 0.5138 36 1 3.0416 0.9509 -1.9563 37 1 1.5001 1.8408 -1.9562 38 1 3.6631 5.5888 -1.9969 39 1 5.2048 4.6989 -1.9963 40 1 6.4286 7.5689 -5.4470 41 1 5.6060 6.1446 -6.1274 42 1 5.4674 8.6308 -8.8401 43 1 5.6876 8.3413 -3.1901 44 1 4.9813 7.1191 -2.1058 45 1 7.0543 5.7692 -2.2773 46 1 7.7605 6.9914 -3.3615 47 1 0.3904 -2.4156 0.0003 48 1 1.6259 -4.5440 -0.0020 49 1 4.0869 -4.5412 -0.0036 50 1 5.3199 -2.4113 0.0057 51 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069951113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:32 Heat of formation + Delta-G solvation = -52.453412 kcal Electronic energy + Delta-G solvation = -32579.465553 eV Core-core repulsion = 28058.747369 eV Total energy + Delta-G solvation = -4520.718185 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 373.183 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.80520 -39.87730 -39.21191 -37.09908 -36.85441 -36.32396 -35.31050 -32.98344 -32.51926 -31.12173 -30.94709 -29.96618 -29.33798 -27.20450 -26.45897 -24.38107 -24.11490 -22.85477 -22.40911 -21.28001 -20.54998 -18.91988 -18.26108 -17.84441 -17.75642 -16.89183 -16.74776 -16.49230 -16.32417 -15.86868 -15.66691 -15.37250 -15.13645 -14.78123 -14.77114 -14.59162 -14.23834 -14.00764 -13.85326 -13.74381 -13.44233 -13.18565 -12.89075 -12.86639 -12.74417 -12.54605 -12.50849 -12.37459 -12.23170 -12.12278 -11.81510 -11.67570 -11.55550 -11.36458 -11.09549 -11.05762 -10.99641 -10.77005 -10.72725 -10.67550 -10.25526 -10.20540 -9.77125 -9.18643 -9.17176 -8.53433 -7.99838 -7.64570 -6.15052 -4.19983 1.18995 1.34435 2.00565 2.20236 2.67734 2.78033 2.83429 3.07698 3.24610 3.33034 3.36180 3.58395 3.65376 4.08583 4.36120 4.42045 4.43939 4.53754 4.68397 4.72884 4.75903 4.83861 4.89546 4.95496 4.97471 5.07021 5.09894 5.11990 5.15654 5.20243 5.20919 5.22559 5.28924 5.36846 5.39800 5.49469 5.58615 5.73147 5.76413 5.97684 5.99046 6.22908 6.24545 6.40156 6.58400 6.79608 6.87799 7.16253 7.23058 7.30981 7.53898 7.55186 7.80756 8.05890 8.09575 8.67967 8.86144 9.45826 10.93174 Molecular weight = 373.18amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.001787 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.368079 B =15668.803360 C =17108.549553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.632 5.632 3 C 0.137 3.863 4 C -0.136 4.136 5 C 0.466 3.534 6 O -0.513 6.513 7 O -0.328 6.328 8 C 0.046 3.954 9 C 0.509 3.491 10 O -0.509 6.509 11 N -0.592 5.592 12 C 0.246 3.754 13 C -0.531 4.531 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.112 3.888 22 C -0.051 4.051 23 C 0.216 3.784 24 N -0.442 5.442 25 C 0.214 3.786 26 C -0.197 4.197 27 C -0.074 4.074 28 C -0.180 4.180 29 C -0.072 4.072 30 C -0.197 4.197 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.264 0.736 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.116 0.884 50 H 0.120 0.880 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 -19.132 16.867 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.342 5.342 3 C 0.013 3.987 4 C -0.175 4.175 5 C 0.309 3.691 6 O -0.402 6.402 7 O -0.242 6.242 8 C -0.032 4.032 9 C 0.293 3.707 10 O -0.383 6.383 11 N -0.325 5.325 12 C 0.127 3.873 13 C -0.570 4.570 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.014 4.014 22 C -0.092 4.092 23 C -0.102 4.102 24 N -0.119 5.119 25 C 0.113 3.887 26 C -0.219 4.219 27 C -0.093 4.093 28 C -0.200 4.200 29 C -0.091 4.091 30 C -0.219 4.219 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.123 0.877 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.135 0.865 50 H 0.138 0.862 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.155 -18.189 17.775 25.950 hybrid contribution -0.780 0.655 -0.727 1.251 sum -5.935 -17.535 17.048 25.166 Atomic orbital electron populations 1.21682 0.79274 1.02903 1.01364 1.46420 1.04985 1.02628 1.80198 1.21180 0.98658 0.85133 0.93753 1.21889 1.02065 0.92327 1.01212 1.23601 0.77100 0.86693 0.81735 1.90681 1.52110 1.64443 1.32952 1.86583 1.67565 1.36253 1.33811 1.23004 0.97712 0.84387 0.98080 1.19744 0.79775 0.81946 0.89224 1.90747 1.49898 1.55989 1.41696 1.48161 1.54800 1.20597 1.08937 1.19430 0.96663 0.95576 0.75586 1.21438 1.05459 1.29309 1.00780 0.92228 1.24921 0.96120 0.96628 0.96314 1.69925 1.29627 1.44207 1.09320 0.86442 0.82175 0.79968 0.78839 1.19787 1.20950 1.20830 1.21400 0.91970 0.98762 0.89244 1.19887 0.99866 0.98450 0.91039 1.29032 0.93344 0.93683 0.94167 1.81216 1.09088 1.09819 1.11792 1.17860 0.91254 0.85629 0.93987 1.20687 0.99627 0.91125 1.10484 1.20895 0.94270 0.97169 0.96980 1.20931 0.94300 0.97880 1.06860 1.20928 0.99594 0.91963 0.96579 1.20760 0.92176 0.98872 1.10079 0.93164 0.91263 0.91158 0.89509 0.89422 0.87110 0.87232 0.88444 0.88636 0.94278 0.93322 0.92632 0.88175 0.90647 0.87668 0.86197 0.86068 0.86313 0.86549 0.86157 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.19 59.85 0.61 1.11 16 2 N -0.63 -4.85 3.01 -179.62 -0.54 -5.39 16 3 C 0.14 1.07 4.45 -4.04 -0.02 1.06 16 4 C -0.14 -1.16 6.14 -27.88 -0.17 -1.33 16 5 C 0.47 5.48 7.96 36.01 0.29 5.77 16 6 O -0.51 -6.75 15.73 -18.75 -0.29 -7.05 16 7 O -0.33 -4.71 9.76 -45.88 -0.45 -5.16 16 8 C 0.05 0.62 4.50 36.01 0.16 0.78 16 9 C 0.51 9.25 7.75 -10.99 -0.09 9.16 16 10 O -0.51 -11.79 16.08 -14.10 -0.23 -12.01 16 11 N -0.59 -10.42 2.46 -175.06 -0.43 -10.85 16 12 C 0.25 5.62 5.16 -5.19 -0.03 5.59 16 13 C -0.53 -13.83 9.39 -34.44 -0.32 -14.15 16 14 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 17 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.11 1.43 5.17 -4.04 -0.02 1.40 16 22 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 23 C 0.22 2.57 15.43 -20.76 -0.32 2.25 16 24 N -0.44 -6.49 18.54 42.15 0.78 -5.71 16 25 C 0.21 1.88 6.55 -83.79 -0.55 1.33 16 26 C -0.20 -1.59 9.21 -39.38 -0.36 -1.96 16 27 C -0.07 -0.57 10.04 -39.61 -0.40 -0.97 16 28 C -0.18 -1.42 10.04 -39.55 -0.40 -1.82 16 29 C -0.07 -0.60 10.04 -39.61 -0.40 -1.00 16 30 C -0.20 -1.75 9.21 -39.38 -0.36 -2.12 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 33 H 0.07 0.34 6.20 -51.93 -0.32 0.02 16 34 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 35 H 0.09 0.73 6.16 -51.92 -0.32 0.41 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.19 7.40 -51.93 -0.38 0.81 16 39 H 0.10 1.05 7.18 -51.93 -0.37 0.67 16 40 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 41 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 44 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 45 H 0.11 0.85 7.22 -51.93 -0.37 0.48 16 46 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.12 0.78 6.14 -52.49 -0.32 0.46 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 49 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 50 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 51 H 0.12 1.02 6.14 -52.49 -0.32 0.69 16 LS Contribution 437.81 15.07 6.60 6.60 Total: -1.00 -34.62 437.81 -8.81 -43.43 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.32 Total: -1.51 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -2.65 Total: 6.02 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.55 Total: -46.17 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.97 Total: -24.22 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.60 Total: 6.60 kcal Total: -34.62 -8.81 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069951113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.027 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds