Wall clock time and date at job start Tue Mar 31 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30705 * 1 3 3 Si 1.86809 * 120.00012 * 2 1 4 4 H 1.48496 * 109.46735 * 269.99872 * 3 2 1 5 5 H 1.48500 * 109.47123 * 30.00030 * 3 2 1 6 6 H 1.48499 * 109.47065 * 149.99878 * 3 2 1 7 7 C 1.40224 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.39437 * 119.99638 * 0.02562 * 7 2 1 10 10 N 1.31963 * 125.25514 * 359.97328 * 9 7 2 11 11 C 1.29659 * 117.32035 * 180.02562 * 10 9 7 12 12 C 1.38194 * 115.19052 * 0.25240 * 11 10 9 13 13 C 1.46772 * 126.00964 * 179.75361 * 12 11 10 14 14 C 1.38712 * 120.62997 * 129.71265 * 13 12 11 15 15 C 1.41712 * 118.69244 * 179.80930 * 14 13 12 16 16 C 1.40367 * 120.15373 * 180.23292 * 15 14 13 17 17 C 1.36578 * 119.86556 * 180.18905 * 16 15 14 18 18 Br 1.89104 * 119.77335 * 180.02562 * 17 16 15 19 19 C 1.38886 * 120.44244 * 0.02562 * 17 16 15 20 20 C 1.37905 * 120.62757 * 359.97438 * 19 17 16 21 21 C 1.39019 * 120.02510 * 359.97438 * 20 19 17 22 22 O 1.35079 * 119.81933 * 180.02562 * 21 20 19 23 23 C 1.34295 * 121.47318 * 180.02562 * 22 21 20 24 24 O 1.21655 * 119.95150 * 180.02562 * 23 22 21 25 25 S 1.76109 * 125.24882 * 180.02562 * 9 7 2 26 26 H 0.97005 * 119.99983 * 0.02562 * 1 2 3 27 27 H 1.08002 * 122.40350 * 179.97438 * 11 10 9 28 28 H 1.08000 * 120.65080 * 0.03962 * 14 13 12 29 29 H 1.08000 * 120.06677 * 0.19497 * 16 15 14 30 30 H 1.08000 * 119.68366 * 179.97438 * 19 17 16 31 31 H 1.08005 * 119.98641 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 2.4886 2.0464 -1.4001 5 1 1.4385 2.6527 0.7000 6 1 3.5386 1.4402 0.7001 7 6 2.0082 -1.2144 0.0005 8 1 3.0882 -1.2143 0.0010 9 6 1.3110 -2.4219 0.0005 10 7 -0.0031 -2.5427 0.0006 11 6 -0.4902 -3.7443 0.0011 12 6 0.4477 -4.7592 0.0070 13 6 0.1614 -6.1987 0.0140 14 6 0.7724 -7.0452 -0.8994 15 6 0.4692 -8.4288 -0.8532 16 6 1.0736 -9.3137 -1.7598 17 6 0.7742 -10.6454 -1.7126 18 35 1.5906 -11.8353 -2.9347 19 6 -0.1258 -11.1314 -0.7731 20 6 -0.7308 -10.2793 0.1267 21 6 -0.4418 -8.9198 0.0997 22 8 -1.0365 -8.0889 0.9833 23 6 -0.7821 -6.7703 0.9865 24 8 -1.3330 -6.0474 1.7952 25 16 2.0483 -4.0212 0.0018 26 1 -0.4850 0.8401 -0.0004 27 1 -1.5527 -3.9381 0.0015 28 1 1.4683 -6.6580 -1.6288 29 1 1.7741 -8.9422 -2.4931 30 1 -0.3540 -12.1867 -0.7469 31 1 -1.4295 -10.6684 0.8527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000092944.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:17 Heat of formation + Delta-G solvation = 2.693258 kcal Electronic energy + Delta-G solvation = -21745.138977 eV Core-core repulsion = 18129.765301 eV Total energy + Delta-G solvation = -3615.373677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 376.951 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55236 -38.86941 -37.65440 -36.96666 -34.74958 -33.96449 -32.14469 -31.02947 -29.27924 -28.85474 -26.41985 -23.96057 -23.74612 -23.04065 -22.45850 -19.79093 -19.26306 -17.98010 -17.25243 -16.62289 -16.37376 -16.21155 -15.33613 -15.06751 -15.02443 -14.84039 -14.05077 -13.70625 -13.59495 -13.16979 -12.91577 -12.77564 -12.68774 -12.37255 -11.98539 -11.63414 -11.58936 -11.53505 -11.13686 -11.07349 -10.68912 -10.53017 -10.38724 -10.07878 -9.86535 -9.76255 -8.85143 -8.43029 -7.96415 -7.78923 -7.38584 -7.06352 -4.93644 0.24339 0.79526 1.36697 1.66470 2.14574 2.49628 2.75127 2.78728 2.83663 2.90992 3.10438 3.38376 3.56429 3.79439 4.13567 4.23410 4.48971 4.59250 4.82589 4.95710 4.98339 5.17133 5.51326 5.62496 5.72251 5.87811 5.93677 6.01064 6.28092 6.32508 6.46262 6.58670 6.88160 7.23714 7.37735 7.57612 7.71052 7.81071 8.16584 9.56394 9.69883 Molecular weight = 376.95amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.002131 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.230970 B =13136.035469 C =14316.220899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.677 5.677 2 C 0.058 3.942 3 Si 0.930 3.070 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.339 4.339 8 H 0.104 0.896 9 C 0.231 3.769 10 N -0.537 5.537 11 C 0.181 3.819 12 C -0.369 4.369 13 C -0.014 4.014 14 C -0.115 4.115 15 C -0.091 4.091 16 C -0.050 4.050 17 C -0.106 4.106 18 Br -0.051 7.051 19 C -0.071 4.071 20 C -0.117 4.117 21 C 0.128 3.872 22 O -0.272 6.272 23 C 0.503 3.497 24 O -0.438 6.438 25 S -0.110 6.110 26 H 0.291 0.709 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 -17.046 -5.472 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.296 5.296 2 C -0.175 4.175 3 Si 0.751 3.249 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.380 4.380 8 H 0.122 0.878 9 C -0.012 4.012 10 N -0.253 5.253 11 C 0.012 3.988 12 C -0.491 4.491 13 C -0.019 4.019 14 C -0.137 4.137 15 C -0.093 4.093 16 C -0.070 4.070 17 C -0.186 4.186 18 Br 0.034 6.966 19 C -0.091 4.091 20 C -0.137 4.137 21 C 0.082 3.918 22 O -0.185 6.185 23 C 0.347 3.653 24 O -0.322 6.322 25 S 0.146 5.854 26 H 0.103 0.897 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.817 -16.872 -5.373 17.930 hybrid contribution -0.669 0.662 0.243 0.972 sum 2.147 -16.211 -5.130 17.138 Atomic orbital electron populations 1.69992 1.07765 1.30223 1.21599 1.26329 0.95317 1.01873 0.94004 0.85929 0.80370 0.78586 0.80006 1.18549 1.19287 1.17732 1.19366 0.95471 0.88302 1.34855 0.87834 1.23945 0.89747 0.92959 0.94571 1.67023 1.09250 1.20555 1.28516 1.22223 0.98704 0.86712 0.91159 1.22360 0.93879 0.92497 1.40380 1.20200 0.95434 0.93012 0.93244 1.21822 1.03065 0.89918 0.98845 1.18106 0.98944 0.94902 0.97308 1.20939 0.97924 0.90676 0.97488 1.21345 1.03270 0.94110 0.99833 1.96715 1.80524 1.60985 1.58386 1.20904 0.94830 1.00141 0.93220 1.20505 1.02608 0.89241 1.01306 1.19157 0.93579 0.89603 0.89415 1.83587 1.61292 1.21563 1.52023 1.21258 0.81583 0.77960 0.84470 1.90938 1.49413 1.53151 1.38704 1.84101 1.11239 1.07100 1.82926 0.89748 0.84233 0.83811 0.83879 0.84039 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -16.12 11.84 55.56 0.66 -15.46 16 2 C 0.06 1.29 5.50 -17.29 -0.10 1.20 16 3 Si 0.93 15.86 29.56 -169.99 -5.03 10.83 16 4 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 5 H -0.27 -4.50 7.11 56.52 0.40 -4.10 16 6 H -0.25 -4.23 7.11 56.52 0.40 -3.83 16 7 C -0.34 -8.02 9.37 -38.39 -0.36 -8.38 16 8 H 0.10 2.20 7.85 -52.49 -0.41 1.79 16 9 C 0.23 5.90 7.05 -17.05 -0.12 5.78 16 10 N -0.54 -14.31 8.57 -12.61 -0.11 -14.42 16 11 C 0.18 4.47 10.79 -18.48 -0.20 4.27 16 12 C -0.37 -8.52 5.85 -36.15 -0.21 -8.74 16 13 C -0.01 -0.28 5.96 -102.70 -0.61 -0.89 16 14 C -0.11 -1.91 9.63 -38.08 -0.37 -2.27 16 15 C -0.09 -1.30 5.74 -106.85 -0.61 -1.91 16 16 C -0.05 -0.59 9.44 -39.38 -0.37 -0.96 16 17 C -0.11 -1.13 6.18 -39.94 -0.25 -1.37 16 18 Br -0.05 -0.48 33.67 -68.01 -2.29 -2.77 16 19 C -0.07 -0.69 9.76 -39.46 -0.38 -1.07 16 20 C -0.12 -1.29 9.98 -39.41 -0.39 -1.68 16 21 C 0.13 1.84 6.75 -38.37 -0.26 1.58 16 22 O -0.27 -4.67 9.80 -21.10 -0.21 -4.88 16 23 C 0.50 10.08 8.13 34.31 0.28 10.36 16 24 O -0.44 -10.06 17.08 -19.42 -0.33 -10.39 16 25 S -0.11 -2.52 23.36 -107.50 -2.51 -5.03 16 26 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 27 H 0.14 3.25 8.06 -52.49 -0.42 2.83 16 28 H 0.14 2.26 8.06 -52.49 -0.42 1.83 16 29 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.15 1.28 8.06 -52.48 -0.42 0.85 16 LS Contribution 321.75 15.07 4.85 4.85 Total: -1.00 -28.00 321.75 -10.58 -38.58 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -1.66 Total: 2.79 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.95 Total: -4.10 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.55 Total: -29.88 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.54 Total: -15.27 kcal Atomic # 14 Polarization: 15.86 SS G_CDS: -5.03 Total: 10.83 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.51 Total: -5.03 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.00 -10.58 -38.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000092944.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.276 kcal (2) G-P(sol) polarization free energy of solvation -28.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds