Wall clock time and date at job start Tue Mar 31 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30705 * 1 3 3 Si 1.86809 * 120.00012 * 2 1 4 4 H 1.48496 * 109.46735 * 269.99872 * 3 2 1 5 5 H 1.48500 * 109.47123 * 30.00030 * 3 2 1 6 6 H 1.48499 * 109.47065 * 149.99878 * 3 2 1 7 7 C 1.40224 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.39437 * 119.99638 * 0.02562 * 7 2 1 10 10 N 1.31963 * 125.25514 * 359.97328 * 9 7 2 11 11 C 1.29659 * 117.32035 * 180.02562 * 10 9 7 12 12 C 1.38194 * 115.19052 * 0.25240 * 11 10 9 13 13 C 1.46772 * 126.00964 * 179.75361 * 12 11 10 14 14 C 1.38712 * 120.62997 * 129.71265 * 13 12 11 15 15 C 1.41712 * 118.69244 * 179.80930 * 14 13 12 16 16 C 1.40367 * 120.15373 * 180.23292 * 15 14 13 17 17 C 1.36578 * 119.86556 * 180.18905 * 16 15 14 18 18 Br 1.89104 * 119.77335 * 180.02562 * 17 16 15 19 19 C 1.38886 * 120.44244 * 0.02562 * 17 16 15 20 20 C 1.37905 * 120.62757 * 359.97438 * 19 17 16 21 21 C 1.39019 * 120.02510 * 359.97438 * 20 19 17 22 22 O 1.35079 * 119.81933 * 180.02562 * 21 20 19 23 23 C 1.34295 * 121.47318 * 180.02562 * 22 21 20 24 24 O 1.21655 * 119.95150 * 180.02562 * 23 22 21 25 25 S 1.76109 * 125.24882 * 180.02562 * 9 7 2 26 26 H 0.97005 * 119.99983 * 0.02562 * 1 2 3 27 27 H 1.08002 * 122.40350 * 179.97438 * 11 10 9 28 28 H 1.08000 * 120.65080 * 0.03962 * 14 13 12 29 29 H 1.08000 * 120.06677 * 0.19497 * 16 15 14 30 30 H 1.08000 * 119.68366 * 179.97438 * 19 17 16 31 31 H 1.08005 * 119.98641 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 2.4886 2.0464 -1.4001 5 1 1.4385 2.6527 0.7000 6 1 3.5386 1.4402 0.7001 7 6 2.0082 -1.2144 0.0005 8 1 3.0882 -1.2143 0.0010 9 6 1.3110 -2.4219 0.0005 10 7 -0.0031 -2.5427 0.0006 11 6 -0.4902 -3.7443 0.0011 12 6 0.4477 -4.7592 0.0070 13 6 0.1614 -6.1987 0.0140 14 6 0.7724 -7.0452 -0.8994 15 6 0.4692 -8.4288 -0.8532 16 6 1.0736 -9.3137 -1.7598 17 6 0.7742 -10.6454 -1.7126 18 35 1.5906 -11.8353 -2.9347 19 6 -0.1258 -11.1314 -0.7731 20 6 -0.7308 -10.2793 0.1267 21 6 -0.4418 -8.9198 0.0997 22 8 -1.0365 -8.0889 0.9833 23 6 -0.7821 -6.7703 0.9865 24 8 -1.3330 -6.0474 1.7952 25 16 2.0483 -4.0212 0.0018 26 1 -0.4850 0.8401 -0.0004 27 1 -1.5527 -3.9381 0.0015 28 1 1.4683 -6.6580 -1.6288 29 1 1.7741 -8.9422 -2.4931 30 1 -0.3540 -12.1867 -0.7469 31 1 -1.4295 -10.6684 0.8527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000092944.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:16 Heat of formation + Delta-G solvation = -11.193695 kcal Electronic energy + Delta-G solvation = -21745.741161 eV Core-core repulsion = 18129.765301 eV Total energy + Delta-G solvation = -3615.975860 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 376.951 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.88056 -40.12693 -39.36907 -38.41306 -36.21469 -35.52498 -33.09779 -32.35180 -30.73119 -30.04184 -27.96018 -25.40922 -25.25378 -24.35511 -23.76642 -21.50641 -20.46936 -19.45663 -18.64770 -18.24659 -17.83049 -17.68002 -16.76942 -16.41500 -16.20216 -16.09336 -15.42790 -14.94062 -14.81217 -14.65121 -14.56294 -14.44737 -14.08818 -13.69810 -13.23026 -13.05321 -12.95325 -12.77772 -12.65091 -12.36972 -12.02311 -11.83060 -11.51277 -11.33335 -11.31737 -11.19745 -10.08958 -9.75657 -9.70210 -9.59709 -8.98506 -8.70500 -6.71167 -0.99952 -0.26271 0.33246 0.48754 0.53789 1.04278 1.28704 1.40115 1.44243 1.52063 1.60416 1.83384 2.13351 2.39517 2.58286 2.92861 3.18370 3.32889 3.45010 3.84167 3.89760 4.10136 4.15482 4.40272 4.48363 4.66617 4.76491 4.82821 4.90504 4.96233 5.12405 5.14518 5.34879 5.50102 5.86961 6.02806 6.11135 6.24483 6.41005 7.84871 8.06811 Molecular weight = 376.95amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.002131 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.230970 B =13136.035469 C =14316.220899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.018 3.982 3 Si 1.011 2.989 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.245 1.245 7 C -0.368 4.368 8 H 0.119 0.881 9 C 0.199 3.801 10 N -0.575 5.575 11 C 0.143 3.857 12 C -0.358 4.358 13 C -0.079 4.079 14 C -0.042 4.042 15 C -0.128 4.128 16 C -0.033 4.033 17 C -0.113 4.113 18 Br -0.029 7.029 19 C -0.037 4.037 20 C -0.116 4.116 21 C 0.117 3.883 22 O -0.271 6.271 23 C 0.508 3.492 24 O -0.488 6.488 25 S -0.098 6.098 26 H 0.298 0.702 27 H 0.135 0.865 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.180 0.820 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 -20.797 -6.948 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.210 4.210 3 Si 0.828 3.172 4 H -0.177 1.177 5 H -0.188 1.188 6 H -0.168 1.168 7 C -0.410 4.410 8 H 0.137 0.863 9 C -0.045 4.045 10 N -0.294 5.294 11 C -0.022 4.022 12 C -0.481 4.481 13 C -0.084 4.084 14 C -0.063 4.063 15 C -0.129 4.129 16 C -0.052 4.052 17 C -0.192 4.192 18 Br 0.057 6.943 19 C -0.056 4.056 20 C -0.135 4.135 21 C 0.073 3.927 22 O -0.182 6.182 23 C 0.355 3.645 24 O -0.377 6.377 25 S 0.158 5.842 26 H 0.110 0.890 27 H 0.153 0.847 28 H 0.175 0.825 29 H 0.179 0.821 30 H 0.198 0.802 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.378 -20.724 -6.873 22.268 hybrid contribution -1.126 1.017 0.494 1.596 sum 3.252 -19.706 -6.379 20.967 Atomic orbital electron populations 1.70085 1.09783 1.31651 1.23173 1.27433 0.95928 1.05210 0.92452 0.84764 0.78906 0.73228 0.80310 1.17672 1.18819 1.16755 1.19827 0.96336 0.88688 1.36123 0.86307 1.24384 0.89898 0.94362 0.95890 1.66952 1.10264 1.21561 1.30625 1.22232 0.98973 0.87222 0.93768 1.22607 0.93280 0.93856 1.38338 1.20015 0.99581 0.92139 0.96670 1.22177 0.98027 0.90707 0.95397 1.18108 1.01270 0.94059 0.99491 1.21144 0.96880 0.90935 0.96283 1.21604 1.03216 0.94095 1.00310 1.96785 1.80151 1.59816 1.57566 1.21438 0.91906 1.01692 0.90608 1.20882 1.02972 0.87496 1.02127 1.19753 0.93516 0.90552 0.88927 1.83559 1.61509 1.20455 1.52713 1.21109 0.81102 0.78555 0.83690 1.90902 1.51545 1.54640 1.40584 1.83704 1.11373 1.06412 1.82679 0.89041 0.84720 0.82544 0.82054 0.80222 0.80930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.70 11.84 21.88 0.26 -36.44 16 2 C 0.02 0.85 5.50 85.34 0.47 1.32 16 3 Si 1.01 32.94 29.56 68.60 2.03 34.96 16 4 H -0.25 -7.81 7.11 99.48 0.71 -7.11 16 5 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 6 H -0.24 -7.50 7.11 99.48 0.71 -6.79 16 7 C -0.37 -18.24 9.37 23.04 0.22 -18.02 16 8 H 0.12 5.22 7.85 -2.91 -0.02 5.20 16 9 C 0.20 10.80 7.05 84.96 0.60 11.40 16 10 N -0.58 -33.11 8.57 -193.81 -1.66 -34.77 16 11 C 0.14 7.68 10.79 85.00 0.92 8.60 16 12 C -0.36 -17.46 5.85 24.49 0.14 -17.31 16 13 C -0.08 -3.26 5.96 -18.62 -0.11 -3.37 16 14 C -0.04 -1.33 9.63 23.24 0.22 -1.11 16 15 C -0.13 -3.29 5.74 -21.31 -0.12 -3.42 16 16 C -0.03 -0.63 9.44 22.40 0.21 -0.42 16 17 C -0.11 -1.80 6.18 22.04 0.14 -1.67 16 18 Br -0.03 -0.39 33.67 -20.37 -0.69 -1.08 16 19 C -0.04 -0.50 9.76 22.35 0.22 -0.28 16 20 C -0.12 -2.01 9.98 22.38 0.22 -1.79 16 21 C 0.12 3.08 6.75 23.05 0.16 3.23 16 22 O -0.27 -9.17 9.80 13.36 0.13 -9.04 16 23 C 0.51 21.18 8.13 70.14 0.57 21.75 16 24 O -0.49 -24.03 17.08 19.37 0.33 -23.70 16 25 S -0.10 -4.70 23.36 -56.49 -1.32 -6.02 16 26 H 0.30 13.25 8.29 -92.70 -0.77 12.48 16 27 H 0.14 7.00 8.06 -2.91 -0.02 6.98 16 28 H 0.16 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -67.75 321.75 4.14 -63.61 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.21 Total: 13.57 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 3.85 Total: -1.08 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.40 Total: -71.21 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: 0.46 Total: -32.74 kcal Atomic # 14 Polarization: 32.94 SS G_CDS: 2.03 Total: 34.96 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -1.32 Total: -6.02 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -0.69 Total: -1.08 kcal Total: -67.75 4.14 -63.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000092944.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.418 kcal (2) G-P(sol) polarization free energy of solvation -67.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds