Wall clock time and date at job start Tue Mar 31 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38563 * 119.79833 * 2 1 4 4 C 1.37749 * 120.21710 * 180.02562 * 3 2 1 5 5 C 1.40122 * 119.81451 * 359.97438 * 4 3 2 6 6 C 1.47016 * 120.19104 * 179.97438 * 5 4 3 7 7 C 1.39046 * 125.71925 * 130.00129 * 6 5 4 8 8 C 1.38658 * 107.03513 * 179.97438 * 7 6 5 9 9 C 1.39792 * 106.84660 * 0.02562 * 8 7 6 10 10 C 1.40602 * 125.90248 * 179.97438 * 9 8 7 11 11 N 1.31384 * 120.00463 * 180.02562 * 10 9 8 12 12 N 1.40103 * 120.00476 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00129 * 180.02562 * 12 11 10 14 14 O 1.22145 * 120.00106 * 359.97438 * 13 12 11 15 15 C 1.39221 * 120.00106 * 179.97438 * 13 12 11 16 16 H 1.08002 * 119.99831 * 0.02562 * 15 13 12 17 17 C 1.39888 * 120.00436 * 179.97438 * 15 13 12 18 18 N 1.30793 * 119.99452 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 120.00267 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47400 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47267 * 119.99812 * 19 17 15 22 22 H 1.48499 * 109.47373 * 239.99899 * 19 17 15 23 23 O 1.34589 * 125.72581 * 309.69401 * 6 5 4 24 24 C 1.40185 * 119.61283 * 0.25448 * 5 4 3 25 25 Br 1.89095 * 120.11212 * 179.72506 * 24 5 4 26 26 C 1.37950 * 119.77440 * 359.49064 * 24 5 4 27 27 H 1.08995 * 109.46672 * 90.00198 * 1 2 3 28 28 H 1.08993 * 109.47085 * 210.00300 * 1 2 3 29 29 H 1.08998 * 109.46756 * 330.00212 * 1 2 3 30 30 H 1.08001 * 119.89436 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.09397 * 180.02562 * 4 3 2 32 32 H 1.08006 * 126.48017 * 0.02562 * 7 6 5 33 33 H 1.08004 * 126.58268 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.99828 * 359.97438 * 10 9 8 35 35 H 0.96998 * 119.99825 * 359.97438 * 12 11 10 36 36 H 0.97004 * 119.99568 * 179.97438 * 18 17 15 37 37 H 1.08006 * 119.91423 * 180.25084 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2024 0.0000 4 6 3.5731 1.2125 -0.0005 5 6 4.2786 0.0019 -0.0005 6 6 5.7488 0.0029 -0.0017 7 6 6.5618 -0.7217 0.8628 8 6 7.8748 -0.4358 0.5210 9 6 7.8285 0.4620 -0.5495 10 6 8.9394 1.0157 -1.2098 11 7 8.7612 1.8526 -2.2068 12 7 9.8682 2.4040 -2.8651 13 6 9.6853 3.2628 -3.8875 14 8 8.5544 3.5601 -4.2406 15 6 10.7854 3.8112 -4.5413 16 1 11.7853 3.5480 -4.2295 17 6 10.5956 4.7022 -5.6029 18 7 9.3846 5.0205 -5.9809 19 14 12.0716 5.4373 -6.4806 20 1 13.3209 4.9201 -5.8665 21 1 12.0328 5.0591 -7.9160 22 1 12.0345 6.9167 -6.3573 23 8 6.5335 0.7010 -0.8433 24 6 3.5745 -1.2103 -0.0054 25 35 4.5123 -2.8522 -0.0133 26 6 2.1950 -1.2012 0.0005 27 1 -0.3632 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6506 2.1348 -0.0004 31 1 4.1077 2.1508 -0.0001 32 1 6.2327 -1.3829 1.6509 33 1 8.7630 -0.8304 0.9920 34 1 9.9394 0.7538 -0.8968 35 1 10.7663 2.1682 -2.5845 36 1 9.2530 5.6387 -6.7168 37 1 1.6502 -2.1338 0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000567416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:19 Heat of formation + Delta-G solvation = 44.136058 kcal Electronic energy + Delta-G solvation = -23684.924511 eV Core-core repulsion = 19862.146815 eV Total energy + Delta-G solvation = -3822.777696 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.021 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11612 -39.47470 -37.74132 -35.42932 -33.96689 -32.93145 -32.62145 -32.27535 -31.39840 -29.58631 -29.12285 -27.28794 -26.01801 -23.27934 -22.82082 -21.60568 -21.11365 -20.29457 -19.70186 -17.98292 -17.31090 -16.25215 -16.13951 -15.71876 -15.44842 -15.36919 -14.96877 -14.24337 -14.14831 -13.89248 -13.78182 -13.29005 -13.02561 -12.86535 -12.77734 -12.68050 -12.62252 -12.31284 -11.68710 -11.53371 -11.44271 -11.35945 -11.02362 -10.91123 -10.72127 -10.46063 -10.38242 -9.73700 -9.64360 -9.29260 -9.07466 -8.96200 -8.35782 -7.82598 -7.05032 -6.45801 -5.04519 0.53198 0.95474 1.33345 1.43580 2.45390 2.95191 2.99819 3.07645 3.13058 3.34784 3.43781 3.62909 4.03225 4.37151 4.43015 4.54752 4.60089 4.88547 4.94875 5.04005 5.12682 5.27541 5.28488 5.39065 5.55091 5.60868 5.71081 5.71203 5.81232 5.83924 5.97445 6.06958 6.17224 6.24339 6.45930 6.53033 6.66108 7.14207 7.30259 7.78349 7.89631 8.50359 8.69211 9.20722 10.31830 10.57534 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.014519 B = 0.002070 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.061094 B =13520.289716 C =14704.530589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.078 4.078 3 C -0.104 4.104 4 C -0.085 4.085 5 C 0.013 3.987 6 C -0.015 4.015 7 C -0.157 4.157 8 C -0.196 4.196 9 C 0.076 3.924 10 C 0.019 3.981 11 N -0.161 5.161 12 N -0.579 5.579 13 C 0.552 3.448 14 O -0.551 6.551 15 C -0.530 4.530 16 H 0.072 0.928 17 C 0.086 3.914 18 N -0.739 5.739 19 Si 0.919 3.081 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.272 1.272 23 O -0.132 6.132 24 C -0.068 4.068 25 Br -0.039 7.039 26 C -0.093 4.093 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.136 0.864 35 H 0.371 0.629 36 H 0.275 0.725 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 -14.494 15.972 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.079 4.079 3 C -0.122 4.122 4 C -0.104 4.104 5 C 0.011 3.989 6 C -0.069 4.069 7 C -0.176 4.176 8 C -0.219 4.219 9 C 0.022 3.978 10 C -0.186 4.186 11 N 0.024 4.976 12 N -0.325 5.325 13 C 0.362 3.638 14 O -0.431 6.431 15 C -0.567 4.567 16 H 0.091 0.909 17 C -0.138 4.138 18 N -0.366 5.366 19 Si 0.743 3.257 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.198 1.198 23 O -0.024 6.024 24 C -0.148 4.148 25 Br 0.047 6.953 26 C -0.113 4.113 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.153 0.847 35 H 0.207 0.793 36 H 0.086 0.914 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.880 -14.002 14.627 24.549 hybrid contribution 1.877 0.152 0.222 1.897 sum -12.002 -13.850 14.848 23.587 Atomic orbital electron populations 1.20822 0.90351 1.03126 1.02822 1.20085 0.96513 0.92453 0.98839 1.21125 0.93806 0.98033 0.99276 1.21486 0.94177 0.97273 0.97437 1.17582 0.87777 0.92265 1.01265 1.20700 0.89725 1.00586 0.95843 1.21828 0.92170 1.02057 1.01558 1.21921 0.98048 1.02424 0.99540 1.19564 0.80824 0.99875 0.97569 1.21843 0.94775 1.02772 0.99172 1.75363 1.17778 1.02210 1.02262 1.48279 1.02775 1.46654 1.34842 1.16493 0.91350 0.78137 0.77802 1.90798 1.25343 1.61822 1.65124 1.19438 0.93405 1.27244 1.16605 0.90928 1.25767 0.96879 0.95061 0.96137 1.70127 1.21829 1.23826 1.20834 0.86118 0.81219 0.79062 0.79289 1.18454 1.19764 1.19759 1.84311 1.16170 1.54639 1.47278 1.21937 0.94515 0.90943 1.07383 1.96721 1.76352 1.24694 1.97506 1.20858 0.91386 0.98695 1.00366 0.90665 0.91251 0.91094 0.84859 0.84355 0.83191 0.82757 0.84658 0.79273 0.91423 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.00 36.01 0.36 -0.33 16 2 C -0.08 -0.71 5.89 -104.43 -0.62 -1.32 16 3 C -0.10 -1.03 9.67 -39.64 -0.38 -1.42 16 4 C -0.08 -1.05 9.81 -39.05 -0.38 -1.44 16 5 C 0.01 0.18 5.81 -104.90 -0.61 -0.43 16 6 C -0.02 -0.23 6.26 -35.73 -0.22 -0.46 16 7 C -0.16 -2.09 9.13 -39.13 -0.36 -2.44 16 8 C -0.20 -2.62 10.88 -38.85 -0.42 -3.04 16 9 C 0.08 1.28 6.96 -38.11 -0.27 1.02 16 10 C 0.02 0.34 10.71 -16.85 -0.18 0.16 16 11 N -0.16 -3.76 11.02 30.87 0.34 -3.42 16 12 N -0.58 -13.87 6.26 28.63 0.18 -13.69 16 13 C 0.55 16.12 7.60 -15.90 -0.12 16.00 16 14 O -0.55 -18.66 15.15 4.79 0.07 -18.59 16 15 C -0.53 -14.55 9.17 -38.60 -0.35 -14.90 16 16 H 0.07 1.77 7.84 -52.49 -0.41 1.35 16 17 C 0.09 2.31 5.49 -17.38 -0.10 2.21 16 18 N -0.74 -21.59 11.67 55.54 0.65 -20.94 16 19 Si 0.92 19.15 29.56 -169.99 -5.02 14.12 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 O -0.13 -2.48 10.64 3.19 0.03 -2.44 16 24 C -0.07 -0.82 6.26 -38.96 -0.24 -1.06 16 25 Br -0.04 -0.44 30.87 -68.01 -2.10 -2.54 16 26 C -0.09 -0.92 9.42 -39.62 -0.37 -1.29 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.15 1.67 7.55 -52.48 -0.40 1.28 16 33 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.14 1.85 8.04 -52.49 -0.42 1.43 16 35 H 0.37 7.27 8.62 -182.60 -1.57 5.70 16 36 H 0.27 7.14 8.30 -40.82 -0.34 6.80 16 37 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -36.27 356.43 -9.64 -45.91 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.89 Total: 4.96 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -4.27 Total: -8.74 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 1.17 Total: -38.04 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: 0.11 Total: -21.03 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.10 Total: -2.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.27 -9.64 -45.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.042 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds