Wall clock time and date at job start Tue Mar 31 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38563 * 119.79833 * 2 1 4 4 C 1.37749 * 120.21710 * 180.02562 * 3 2 1 5 5 C 1.40122 * 119.81451 * 359.97438 * 4 3 2 6 6 C 1.47016 * 120.19104 * 179.97438 * 5 4 3 7 7 C 1.39046 * 125.71925 * 130.00129 * 6 5 4 8 8 C 1.38658 * 107.03513 * 179.97438 * 7 6 5 9 9 C 1.39792 * 106.84660 * 0.02562 * 8 7 6 10 10 C 1.40602 * 125.90248 * 179.97438 * 9 8 7 11 11 N 1.31384 * 120.00463 * 180.02562 * 10 9 8 12 12 N 1.40103 * 120.00476 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00129 * 180.02562 * 12 11 10 14 14 O 1.22145 * 120.00106 * 359.97438 * 13 12 11 15 15 C 1.39221 * 120.00106 * 179.97438 * 13 12 11 16 16 H 1.08002 * 119.99831 * 0.02562 * 15 13 12 17 17 C 1.39888 * 120.00436 * 179.97438 * 15 13 12 18 18 N 1.30793 * 119.99452 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 120.00267 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47400 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47267 * 119.99812 * 19 17 15 22 22 H 1.48499 * 109.47373 * 239.99899 * 19 17 15 23 23 O 1.34589 * 125.72581 * 309.69401 * 6 5 4 24 24 C 1.40185 * 119.61283 * 0.25448 * 5 4 3 25 25 Br 1.89095 * 120.11212 * 179.72506 * 24 5 4 26 26 C 1.37950 * 119.77440 * 359.49064 * 24 5 4 27 27 H 1.08995 * 109.46672 * 90.00198 * 1 2 3 28 28 H 1.08993 * 109.47085 * 210.00300 * 1 2 3 29 29 H 1.08998 * 109.46756 * 330.00212 * 1 2 3 30 30 H 1.08001 * 119.89436 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.09397 * 180.02562 * 4 3 2 32 32 H 1.08006 * 126.48017 * 0.02562 * 7 6 5 33 33 H 1.08004 * 126.58268 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.99828 * 359.97438 * 10 9 8 35 35 H 0.96998 * 119.99825 * 359.97438 * 12 11 10 36 36 H 0.97004 * 119.99568 * 179.97438 * 18 17 15 37 37 H 1.08006 * 119.91423 * 180.25084 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2024 0.0000 4 6 3.5731 1.2125 -0.0005 5 6 4.2786 0.0019 -0.0005 6 6 5.7488 0.0029 -0.0017 7 6 6.5618 -0.7217 0.8628 8 6 7.8748 -0.4358 0.5210 9 6 7.8285 0.4620 -0.5495 10 6 8.9394 1.0157 -1.2098 11 7 8.7612 1.8526 -2.2068 12 7 9.8682 2.4040 -2.8651 13 6 9.6853 3.2628 -3.8875 14 8 8.5544 3.5601 -4.2406 15 6 10.7854 3.8112 -4.5413 16 1 11.7853 3.5480 -4.2295 17 6 10.5956 4.7022 -5.6029 18 7 9.3846 5.0205 -5.9809 19 14 12.0716 5.4373 -6.4806 20 1 13.3209 4.9201 -5.8665 21 1 12.0328 5.0591 -7.9160 22 1 12.0345 6.9167 -6.3573 23 8 6.5335 0.7010 -0.8433 24 6 3.5745 -1.2103 -0.0054 25 35 4.5123 -2.8522 -0.0133 26 6 2.1950 -1.2012 0.0005 27 1 -0.3632 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6506 2.1348 -0.0004 31 1 4.1077 2.1508 -0.0001 32 1 6.2327 -1.3829 1.6509 33 1 8.7630 -0.8304 0.9920 34 1 9.9394 0.7538 -0.8968 35 1 10.7663 2.1682 -2.5845 36 1 9.2530 5.6387 -6.7168 37 1 1.6502 -2.1338 0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000567416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:18 Heat of formation + Delta-G solvation = 19.711724 kcal Electronic energy + Delta-G solvation = -23685.983630 eV Core-core repulsion = 19862.146815 eV Total energy + Delta-G solvation = -3823.836815 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.021 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.36272 -40.33117 -39.68291 -37.17728 -34.91695 -34.74133 -34.08781 -33.20901 -32.95117 -30.55028 -30.30431 -28.86875 -27.34886 -24.49353 -23.75628 -22.85105 -22.21429 -21.88177 -21.13162 -19.70328 -18.48834 -17.81624 -17.70910 -17.33314 -16.50193 -16.36604 -16.17164 -15.71746 -15.21810 -15.08381 -14.86742 -14.76642 -14.61767 -14.04854 -13.79500 -13.78347 -13.39112 -13.27935 -13.20632 -13.09655 -12.77426 -12.72337 -12.51307 -12.16283 -11.98579 -11.78486 -11.42012 -11.21641 -11.06150 -10.78104 -10.38275 -10.03642 -9.93788 -9.64629 -8.53083 -8.46323 -7.16362 -0.51327 0.05459 0.17245 0.51851 1.28154 1.38134 1.39938 1.58815 1.85472 1.99958 2.02739 2.31282 2.40732 2.52176 3.47770 3.61845 3.66858 3.82337 3.86894 4.02654 4.14977 4.20932 4.30293 4.34846 4.60981 4.75795 4.79252 4.84205 4.85703 4.90471 4.95658 5.13450 5.17481 5.20562 5.22377 5.42902 5.56844 5.72513 5.78271 5.96804 6.07970 6.62984 6.84554 7.38835 8.36764 8.54631 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.014519 B = 0.002070 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.061094 B =13520.289716 C =14704.530589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.067 4.067 3 C -0.106 4.106 4 C -0.102 4.102 5 C -0.025 4.025 6 C -0.007 4.007 7 C -0.162 4.162 8 C -0.141 4.141 9 C 0.005 3.995 10 C 0.081 3.919 11 N -0.258 5.258 12 N -0.587 5.587 13 C 0.539 3.461 14 O -0.621 6.621 15 C -0.554 4.554 16 H 0.099 0.901 17 C 0.026 3.974 18 N -0.799 5.799 19 Si 1.014 2.986 20 H -0.240 1.240 21 H -0.265 1.265 22 H -0.265 1.265 23 O -0.172 6.172 24 C -0.075 4.075 25 Br -0.035 7.035 26 C -0.094 4.094 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.125 0.875 32 H 0.177 0.823 33 H 0.199 0.801 34 H 0.181 0.819 35 H 0.388 0.612 36 H 0.282 0.718 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.470 -16.422 17.955 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.068 4.068 3 C -0.124 4.124 4 C -0.121 4.121 5 C -0.027 4.027 6 C -0.060 4.060 7 C -0.181 4.181 8 C -0.164 4.164 9 C -0.047 4.047 10 C -0.125 4.125 11 N -0.069 5.069 12 N -0.334 5.334 13 C 0.350 3.650 14 O -0.507 6.507 15 C -0.590 4.590 16 H 0.117 0.883 17 C -0.192 4.192 18 N -0.426 5.426 19 Si 0.831 3.169 20 H -0.163 1.163 21 H -0.190 1.190 22 H -0.189 1.189 23 O -0.066 6.066 24 C -0.154 4.154 25 Br 0.052 6.948 26 C -0.113 4.113 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.174 0.826 31 H 0.143 0.857 32 H 0.194 0.806 33 H 0.216 0.784 34 H 0.197 0.803 35 H 0.227 0.773 36 H 0.092 0.908 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.660 -15.970 16.658 26.817 hybrid contribution 1.490 0.433 -0.020 1.552 sum -12.170 -15.537 16.638 25.814 Atomic orbital electron populations 1.20925 0.87641 1.04715 1.03762 1.20519 0.98356 0.91652 0.96306 1.21426 0.92823 0.99710 0.98421 1.21552 0.95519 0.96588 0.98456 1.17780 0.87253 0.93532 1.04161 1.21422 0.90766 0.99088 0.94736 1.22195 0.91841 1.02299 1.01764 1.22484 0.99542 0.98239 0.96132 1.19898 0.80279 1.03749 1.00759 1.22605 0.97165 0.97593 0.95156 1.75431 1.17822 1.07202 1.06401 1.47339 1.03792 1.47266 1.34976 1.16910 0.90910 0.78531 0.78632 1.90722 1.27578 1.64634 1.67726 1.20008 0.94167 1.27653 1.17156 0.88254 1.27211 1.00626 0.94851 0.96553 1.70304 1.25386 1.25018 1.21942 0.84744 0.76538 0.77995 0.77595 1.16274 1.19004 1.18930 1.84292 1.17484 1.56004 1.48818 1.22075 0.95412 0.90475 1.07481 1.96707 1.76573 1.24053 1.97514 1.21228 0.90637 1.00149 0.99321 0.89835 0.89550 0.89745 0.82577 0.85674 0.80587 0.78386 0.80258 0.77313 0.90786 0.82175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.00 71.24 0.71 -0.27 16 2 C -0.07 -1.07 5.89 -19.74 -0.12 -1.18 16 3 C -0.11 -2.00 9.67 22.23 0.22 -1.78 16 4 C -0.10 -2.61 9.81 22.61 0.22 -2.39 16 5 C -0.03 -0.69 5.81 -20.05 -0.12 -0.81 16 6 C -0.01 -0.20 6.26 24.77 0.15 -0.05 16 7 C -0.16 -3.97 9.13 22.56 0.21 -3.77 16 8 C -0.14 -3.35 10.88 22.75 0.25 -3.11 16 9 C 0.01 0.18 6.96 23.22 0.16 0.34 16 10 C 0.08 2.89 10.71 85.34 0.91 3.80 16 11 N -0.26 -12.70 11.02 -56.24 -0.62 -13.32 16 12 N -0.59 -29.68 6.26 -181.36 -1.14 -30.82 16 13 C 0.54 33.48 7.60 84.48 0.64 34.12 16 14 O -0.62 -45.36 15.15 -5.79 -0.09 -45.45 16 15 C -0.55 -31.46 9.17 22.91 0.21 -31.25 16 16 H 0.10 4.86 7.84 -2.91 -0.02 4.84 16 17 C 0.03 1.45 5.49 85.25 0.47 1.92 16 18 N -0.80 -49.16 11.67 21.81 0.25 -48.91 16 19 Si 1.01 39.58 29.56 68.60 2.03 41.60 16 20 H -0.24 -8.47 7.11 99.48 0.71 -7.76 16 21 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 O -0.17 -6.73 10.64 -11.49 -0.12 -6.85 16 24 C -0.07 -1.71 6.26 22.67 0.14 -1.57 16 25 Br -0.03 -0.72 30.87 -20.37 -0.63 -1.35 16 26 C -0.09 -1.65 9.42 22.25 0.21 -1.44 16 27 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 0.50 8.08 -2.39 -0.02 0.48 16 29 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 30 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.18 3.37 7.55 -2.91 -0.02 3.35 16 33 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.18 4.48 8.04 -2.91 -0.02 4.46 16 35 H 0.39 15.72 8.62 -213.32 -1.84 13.88 16 36 H 0.28 15.41 8.30 -92.71 -0.77 14.64 16 37 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -88.83 356.43 3.25 -85.58 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.71 Total: 26.95 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 4.27 Total: -7.44 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -1.50 Total: -93.04 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.21 Total: -52.30 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -0.63 Total: -1.35 kcal Total: -88.83 3.25 -85.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.288 kcal (2) G-P(sol) polarization free energy of solvation -88.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds