Wall clock time and date at job start Tue Mar 31 2020 05:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21293 * 119.99825 * 2 1 4 4 N 1.34773 * 120.00258 * 179.97438 * 2 1 3 5 5 C 1.39844 * 119.99960 * 177.12419 * 4 2 1 6 6 C 1.39002 * 119.93432 * 36.26148 * 5 4 2 7 7 C 1.37827 * 120.06553 * 180.02562 * 6 5 4 8 8 C 1.39548 * 119.93685 * 359.97438 * 7 6 5 9 9 C 1.48079 * 120.06503 * 179.97438 * 8 7 6 10 10 C 1.43197 * 120.00072 * 294.99771 * 9 8 7 11 11 N 7.72140 * 167.97067 * 297.93283 * 2 1 3 12 12 C 1.36190 * 119.99722 * 115.00087 * 9 8 7 13 13 C 1.46705 * 119.99917 * 172.47507 * 12 9 8 14 14 C 1.40114 * 120.10006 * 325.35083 * 13 12 9 15 15 C 1.37113 * 119.88679 * 179.78632 * 14 13 12 16 16 C 1.39222 * 120.10694 * 0.49868 * 15 14 13 17 17 N 1.39237 * 119.89486 * 179.76021 * 16 15 14 18 18 C 1.46494 * 120.00040 * 179.97438 * 17 16 15 19 19 C 1.46499 * 119.99811 * 359.97211 * 17 16 15 20 20 C 1.50702 * 109.46879 * 89.99942 * 19 17 16 21 21 H 1.08005 * 120.00029 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99958 * 179.97438 * 20 19 17 23 23 N 1.31511 * 120.00042 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99983 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47374 * 59.99841 * 24 22 20 26 26 H 1.48493 * 109.47315 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47027 * 300.00192 * 24 22 20 28 28 C 1.39226 * 120.21615 * 359.73754 * 16 15 14 29 29 C 1.37117 * 120.10355 * 0.02562 * 28 16 15 30 30 C 1.39548 * 119.86762 * 0.24540 * 8 7 6 31 31 C 1.37833 * 119.93219 * 359.51799 * 30 8 7 32 32 H 1.09003 * 109.47123 * 240.00146 * 1 2 3 33 33 H 1.09002 * 109.47296 * 0.02562 * 1 2 3 34 34 H 1.09004 * 109.46762 * 120.00887 * 1 2 3 35 35 H 0.96998 * 120.00205 * 357.13095 * 4 2 1 36 36 H 1.07997 * 119.96458 * 0.02562 * 6 5 4 37 37 H 1.08005 * 120.03534 * 179.97438 * 7 6 5 38 38 H 1.08005 * 119.99849 * 352.73999 * 12 9 8 39 39 H 1.07994 * 120.05722 * 0.02935 * 14 13 12 40 40 H 1.07999 * 119.94825 * 180.25166 * 15 14 13 41 41 H 1.08999 * 109.47404 * 90.00084 * 18 17 16 42 42 H 1.08999 * 109.47012 * 209.99987 * 18 17 16 43 43 H 1.09000 * 109.47467 * 329.99559 * 18 17 16 44 44 H 1.08998 * 109.47551 * 210.00276 * 19 17 16 45 45 H 1.09006 * 109.47441 * 330.00566 * 19 17 16 46 46 H 0.96999 * 119.99742 * 179.97438 * 23 22 20 47 47 H 1.07992 * 119.95040 * 180.02562 * 28 16 15 48 48 H 1.07997 * 120.05296 * 180.02562 * 29 28 16 49 49 H 1.07999 * 120.03261 * 179.72794 * 30 8 7 50 50 H 1.07999 * 119.96259 * 180.20801 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5780 -1.1679 -0.0602 6 6 4.3014 -0.1790 0.5964 7 6 5.6784 -0.1769 0.5379 8 6 6.3465 -1.1689 -0.1810 9 6 7.8258 -1.1690 -0.2463 10 6 8.5136 -0.0975 -0.9016 11 7 9.0588 0.7538 -1.4218 12 6 8.5322 -2.1881 0.3169 13 6 9.9821 -2.2767 0.1119 14 6 10.5453 -1.8751 -1.1067 15 6 11.9014 -1.9557 -1.2920 16 6 12.7174 -2.4452 -0.2757 17 7 14.0935 -2.5297 -0.4705 18 6 14.9542 -3.0439 0.5976 19 6 14.6805 -2.1045 -1.7436 20 6 15.0349 -0.6416 -1.6696 21 1 14.8425 -0.0845 -0.7645 22 6 15.6057 -0.0147 -2.7568 23 7 15.8404 -0.6932 -3.8587 24 14 16.0457 1.7984 -2.6648 25 1 17.0258 2.0151 -1.5704 26 1 16.6406 2.2295 -3.9553 27 1 14.8199 2.5922 -2.3957 28 6 12.1619 -2.8500 0.9351 29 6 10.8073 -2.7687 1.1316 30 6 5.6174 -2.1577 -0.8430 31 6 4.2407 -2.1575 -0.7769 32 1 -0.3633 -0.5138 0.8900 33 1 -0.3634 1.0277 -0.0005 34 1 -0.3633 -0.5140 -0.8900 35 1 1.6969 -2.0067 0.0429 36 1 3.7838 0.5882 1.1530 37 1 6.2399 0.5919 1.0479 38 1 8.0242 -2.9335 0.9110 39 1 9.9127 -1.4992 -1.8971 40 1 12.3370 -1.6426 -2.2294 41 1 15.0569 -4.1240 0.4932 42 1 15.9368 -2.5771 0.5287 43 1 14.5095 -2.8130 1.5656 44 1 15.5804 -2.6868 -1.9413 45 1 13.9609 -2.2637 -2.5468 46 1 16.2417 -0.2520 -4.6237 47 1 12.7988 -3.2286 1.7207 48 1 10.3774 -3.0826 2.0713 49 1 6.1316 -2.9242 -1.4038 50 1 3.6761 -2.9244 -1.2862 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001735969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:04 Heat of formation + Delta-G solvation = 72.211908 kcal Electronic energy + Delta-G solvation = -31346.736847 eV Core-core repulsion = 27111.421998 eV Total energy + Delta-G solvation = -4235.314850 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.83734 -39.39562 -38.81353 -37.04580 -35.63816 -35.25897 -33.46284 -32.67375 -31.20128 -31.07095 -30.73303 -29.57545 -27.97268 -27.48998 -25.38153 -23.85465 -23.11420 -22.45352 -22.30991 -21.34898 -20.73463 -19.89159 -18.20631 -17.72279 -17.32266 -16.65309 -16.44699 -15.99243 -15.67168 -15.13268 -14.91267 -14.71782 -14.54833 -14.30492 -14.12629 -13.88022 -13.78853 -13.65262 -13.46783 -13.28214 -13.10557 -13.02808 -12.96719 -12.67906 -12.60198 -12.22272 -12.14037 -12.06215 -11.93417 -11.60253 -11.50379 -11.31040 -11.07184 -10.94506 -10.73261 -10.64744 -10.39747 -10.22886 -10.05163 -9.97497 -9.50793 -9.15338 -8.71688 -8.55126 -8.50766 -8.21111 -6.53345 -6.08101 -4.22460 0.68651 1.14671 1.21891 1.99865 2.14308 2.35347 2.63760 3.08557 3.28083 3.32556 3.37186 3.49116 3.71125 3.98028 4.22107 4.27137 4.36478 4.40662 4.65827 4.69649 4.73575 4.77517 4.80599 5.16338 5.17689 5.18459 5.24222 5.29889 5.32620 5.34508 5.37970 5.64848 5.73517 5.84099 5.87878 5.93583 5.98970 6.04867 6.12351 6.15254 6.23669 6.25708 6.33506 6.43819 6.46298 6.74794 6.81381 6.87513 6.93045 7.00194 7.10135 7.24503 7.38986 7.66301 7.75154 7.89968 8.04833 8.11069 8.29039 8.84808 9.44995 10.91263 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.001656 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.770574 B =16903.084022 C =18166.108436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.523 6.523 4 N -0.676 5.676 5 C 0.139 3.861 6 C -0.118 4.118 7 C -0.084 4.084 8 C -0.041 4.041 9 C -0.075 4.075 10 C 0.255 3.745 11 N -0.424 5.424 12 C 0.031 3.969 13 C -0.193 4.193 14 C -0.041 4.041 15 C -0.191 4.191 16 C 0.261 3.739 17 N -0.602 5.602 18 C 0.093 3.907 19 C 0.245 3.755 20 C -0.537 4.537 21 H 0.059 0.941 22 C 0.065 3.935 23 N -0.893 5.893 24 Si 0.896 3.104 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.229 4.229 29 C -0.036 4.036 30 C -0.082 4.082 31 C -0.143 4.143 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.411 0.589 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.034 0.966 45 H 0.038 0.962 46 H 0.266 0.734 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.133 0.867 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.419 -9.697 11.267 32.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.398 6.398 4 N -0.321 5.321 5 C 0.045 3.955 6 C -0.138 4.138 7 C -0.102 4.102 8 C -0.043 4.043 9 C -0.079 4.079 10 C -0.059 4.059 11 N -0.100 5.100 12 C 0.008 3.992 13 C -0.196 4.196 14 C -0.061 4.061 15 C -0.213 4.213 16 C 0.151 3.849 17 N -0.304 5.304 18 C -0.051 4.051 19 C 0.126 3.874 20 C -0.575 4.575 21 H 0.078 0.922 22 C -0.138 4.138 23 N -0.532 5.532 24 Si 0.723 3.277 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.252 4.252 29 C -0.055 4.055 30 C -0.101 4.101 31 C -0.163 4.163 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.247 0.753 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.156 0.844 39 H 0.131 0.869 40 H 0.153 0.847 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.151 0.849 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -26.848 -7.574 10.198 29.702 hybrid contribution -0.082 0.321 0.102 0.347 sum -26.930 -7.253 10.300 29.731 Atomic orbital electron populations 1.21929 0.90677 1.06077 1.04555 1.21041 0.90926 0.83202 0.75258 1.90776 1.70502 1.31245 1.47316 1.43573 1.05127 1.09838 1.73604 1.17819 0.82325 0.97551 0.97780 1.21114 0.93655 0.99266 0.99768 1.21239 0.93571 0.97589 0.97839 1.18445 0.90416 0.96248 0.99167 1.16534 0.90497 0.93740 1.07130 1.25658 0.93237 0.93241 0.93750 1.81347 1.08111 1.11142 1.09388 1.22428 0.92446 0.93057 0.91272 1.18485 0.91916 1.12614 0.96558 1.21007 0.94596 0.94645 0.95806 1.20716 0.92854 1.07016 1.00728 1.18195 0.84407 0.89645 0.92692 1.47226 1.02431 1.63863 1.16870 1.21577 0.95495 0.97632 0.90403 1.19392 0.93880 0.94972 0.79171 1.21484 1.41312 0.94887 0.99843 0.92247 1.24938 0.95292 0.98508 0.95084 1.69908 1.43181 1.36597 1.03473 0.86574 0.78925 0.84860 0.77296 1.20164 1.21074 1.19938 1.20425 0.95383 1.11979 0.97384 1.20710 0.92744 0.95067 0.96973 1.21112 0.92841 0.98150 0.97953 1.20803 0.94646 1.00262 1.00594 0.89040 0.88543 0.89041 0.75321 0.84625 0.85393 0.84397 0.86897 0.84679 0.94060 0.91076 0.92332 0.94845 0.94388 0.92483 0.86274 0.86427 0.84875 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.49 10.32 36.01 0.37 -0.12 16 2 C 0.51 3.75 7.76 -10.99 -0.09 3.67 16 3 O -0.52 -6.46 14.64 5.55 0.08 -6.38 16 4 N -0.68 -3.98 5.33 -9.82 -0.05 -4.03 16 5 C 0.14 1.21 6.27 -83.64 -0.52 0.68 16 6 C -0.12 -1.25 8.66 -39.45 -0.34 -1.59 16 7 C -0.08 -0.91 9.74 -39.24 -0.38 -1.29 16 8 C -0.04 -0.44 5.31 -104.88 -0.56 -0.99 16 9 C -0.08 -0.92 5.23 -104.67 -0.55 -1.47 16 10 C 0.25 4.15 11.71 -22.44 -0.26 3.89 16 11 N -0.42 -8.23 18.23 41.87 0.76 -7.47 16 12 C 0.03 0.34 9.50 -36.90 -0.35 -0.01 16 13 C -0.19 -2.82 5.48 -105.07 -0.58 -3.39 16 14 C -0.04 -0.72 8.24 -39.29 -0.32 -1.05 16 15 C -0.19 -3.89 9.16 -39.62 -0.36 -4.26 16 16 C 0.26 5.12 6.56 -83.76 -0.55 4.57 16 17 N -0.60 -12.47 2.98 -180.95 -0.54 -13.01 16 18 C 0.09 1.53 10.18 59.84 0.61 2.14 16 19 C 0.25 6.07 4.90 -5.19 -0.03 6.05 16 20 C -0.54 -14.75 9.39 -34.44 -0.32 -15.07 16 21 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 22 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 24 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 28 C -0.23 -3.67 9.16 -39.62 -0.36 -4.03 16 29 C -0.04 -0.50 9.77 -39.29 -0.38 -0.88 16 30 C -0.08 -0.71 9.72 -39.24 -0.38 -1.10 16 31 C -0.14 -1.08 9.95 -39.45 -0.39 -1.47 16 32 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 33 H 0.10 0.34 8.12 -51.93 -0.42 -0.09 16 34 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 35 H 0.41 0.85 8.82 -40.82 -0.36 0.49 16 36 H 0.14 1.54 6.36 -52.49 -0.33 1.21 16 37 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.11 1.99 6.01 -52.49 -0.32 1.67 16 40 H 0.14 3.11 6.11 -52.49 -0.32 2.79 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 43 H 0.06 0.84 6.17 -51.93 -0.32 0.52 16 44 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 45 H 0.04 1.00 6.17 -51.93 -0.32 0.68 16 46 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.12 1.67 6.11 -52.49 -0.32 1.34 16 48 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 49 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 50 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 428.62 15.07 6.46 6.46 Total: -1.00 -35.11 428.62 -9.90 -45.01 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.48 Total: 1.57 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -5.85 Total: -14.03 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.91 Total: -49.53 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: 0.08 Total: -6.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -35.11 -9.90 -45.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001735969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.221 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds