Wall clock time and date at job start Tue Mar 31 2020 05:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21293 * 119.99825 * 2 1 4 4 N 1.34773 * 120.00258 * 179.97438 * 2 1 3 5 5 C 1.39844 * 119.99960 * 177.12419 * 4 2 1 6 6 C 1.39002 * 119.93432 * 36.26148 * 5 4 2 7 7 C 1.37827 * 120.06553 * 180.02562 * 6 5 4 8 8 C 1.39548 * 119.93685 * 359.97438 * 7 6 5 9 9 C 1.48079 * 120.06503 * 179.97438 * 8 7 6 10 10 C 1.43197 * 120.00072 * 294.99771 * 9 8 7 11 11 N 7.72140 * 167.97067 * 297.93283 * 2 1 3 12 12 C 1.36190 * 119.99722 * 115.00087 * 9 8 7 13 13 C 1.46705 * 119.99917 * 172.47507 * 12 9 8 14 14 C 1.40114 * 120.10006 * 325.35083 * 13 12 9 15 15 C 1.37113 * 119.88679 * 179.78632 * 14 13 12 16 16 C 1.39222 * 120.10694 * 0.49868 * 15 14 13 17 17 N 1.39237 * 119.89486 * 179.76021 * 16 15 14 18 18 C 1.46494 * 120.00040 * 179.97438 * 17 16 15 19 19 C 1.46499 * 119.99811 * 359.97211 * 17 16 15 20 20 C 1.50702 * 109.46879 * 89.99942 * 19 17 16 21 21 H 1.08005 * 120.00029 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99958 * 179.97438 * 20 19 17 23 23 N 1.31511 * 120.00042 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99983 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47374 * 59.99841 * 24 22 20 26 26 H 1.48493 * 109.47315 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47027 * 300.00192 * 24 22 20 28 28 C 1.39226 * 120.21615 * 359.73754 * 16 15 14 29 29 C 1.37117 * 120.10355 * 0.02562 * 28 16 15 30 30 C 1.39548 * 119.86762 * 0.24540 * 8 7 6 31 31 C 1.37833 * 119.93219 * 359.51799 * 30 8 7 32 32 H 1.09003 * 109.47123 * 240.00146 * 1 2 3 33 33 H 1.09002 * 109.47296 * 0.02562 * 1 2 3 34 34 H 1.09004 * 109.46762 * 120.00887 * 1 2 3 35 35 H 0.96998 * 120.00205 * 357.13095 * 4 2 1 36 36 H 1.07997 * 119.96458 * 0.02562 * 6 5 4 37 37 H 1.08005 * 120.03534 * 179.97438 * 7 6 5 38 38 H 1.08005 * 119.99849 * 352.73999 * 12 9 8 39 39 H 1.07994 * 120.05722 * 0.02935 * 14 13 12 40 40 H 1.07999 * 119.94825 * 180.25166 * 15 14 13 41 41 H 1.08999 * 109.47404 * 90.00084 * 18 17 16 42 42 H 1.08999 * 109.47012 * 209.99987 * 18 17 16 43 43 H 1.09000 * 109.47467 * 329.99559 * 18 17 16 44 44 H 1.08998 * 109.47551 * 210.00276 * 19 17 16 45 45 H 1.09006 * 109.47441 * 330.00566 * 19 17 16 46 46 H 0.96999 * 119.99742 * 179.97438 * 23 22 20 47 47 H 1.07992 * 119.95040 * 180.02562 * 28 16 15 48 48 H 1.07997 * 120.05296 * 180.02562 * 29 28 16 49 49 H 1.07999 * 120.03261 * 179.72794 * 30 8 7 50 50 H 1.07999 * 119.96259 * 180.20801 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5780 -1.1679 -0.0602 6 6 4.3014 -0.1790 0.5964 7 6 5.6784 -0.1769 0.5379 8 6 6.3465 -1.1689 -0.1810 9 6 7.8258 -1.1690 -0.2463 10 6 8.5136 -0.0975 -0.9016 11 7 9.0588 0.7538 -1.4218 12 6 8.5322 -2.1881 0.3169 13 6 9.9821 -2.2767 0.1119 14 6 10.5453 -1.8751 -1.1067 15 6 11.9014 -1.9557 -1.2920 16 6 12.7174 -2.4452 -0.2757 17 7 14.0935 -2.5297 -0.4705 18 6 14.9542 -3.0439 0.5976 19 6 14.6805 -2.1045 -1.7436 20 6 15.0349 -0.6416 -1.6696 21 1 14.8425 -0.0845 -0.7645 22 6 15.6057 -0.0147 -2.7568 23 7 15.8404 -0.6932 -3.8587 24 14 16.0457 1.7984 -2.6648 25 1 17.0258 2.0151 -1.5704 26 1 16.6406 2.2295 -3.9553 27 1 14.8199 2.5922 -2.3957 28 6 12.1619 -2.8500 0.9351 29 6 10.8073 -2.7687 1.1316 30 6 5.6174 -2.1577 -0.8430 31 6 4.2407 -2.1575 -0.7769 32 1 -0.3633 -0.5138 0.8900 33 1 -0.3634 1.0277 -0.0005 34 1 -0.3633 -0.5140 -0.8900 35 1 1.6969 -2.0067 0.0429 36 1 3.7838 0.5882 1.1530 37 1 6.2399 0.5919 1.0479 38 1 8.0242 -2.9335 0.9110 39 1 9.9127 -1.4992 -1.8971 40 1 12.3370 -1.6426 -2.2294 41 1 15.0569 -4.1240 0.4932 42 1 15.9368 -2.5771 0.5287 43 1 14.5095 -2.8130 1.5656 44 1 15.5804 -2.6868 -1.9413 45 1 13.9609 -2.2637 -2.5468 46 1 16.2417 -0.2520 -4.6237 47 1 12.7988 -3.2286 1.7207 48 1 10.3774 -3.0826 2.0713 49 1 6.1316 -2.9242 -1.4038 50 1 3.6761 -2.9244 -1.2862 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001735969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:02 Heat of formation + Delta-G solvation = 51.902831 kcal Electronic energy + Delta-G solvation = -31347.617515 eV Core-core repulsion = 27111.421998 eV Total energy + Delta-G solvation = -4236.195517 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.46691 -40.65969 -39.66785 -38.27874 -37.09081 -36.06812 -34.97639 -34.24355 -32.11022 -31.89346 -31.79554 -30.47250 -29.68732 -28.43083 -26.84385 -25.28163 -24.05432 -23.63039 -23.27527 -22.61423 -21.38557 -21.27049 -18.94081 -18.73428 -18.69717 -17.88006 -17.82398 -17.03927 -16.72278 -16.49220 -16.03476 -15.78699 -15.58482 -15.43436 -15.33619 -15.17185 -14.78826 -14.61400 -14.58374 -14.38481 -14.22162 -14.15978 -13.95584 -13.70008 -13.47656 -13.43255 -13.26252 -13.23249 -13.13108 -13.03731 -12.92137 -12.70638 -12.60330 -12.36931 -12.29840 -12.05065 -11.87909 -11.55984 -11.32545 -10.99506 -10.87215 -10.70888 -9.92759 -9.85355 -9.84514 -9.00532 -8.41100 -7.81906 -6.45109 -0.28370 0.28025 0.51604 0.65436 1.09317 1.28391 1.32301 1.39056 1.58826 1.81860 2.17061 2.26157 2.41964 2.53097 2.79116 2.98607 3.07059 3.25376 3.67909 3.82695 3.94744 4.07943 4.10633 4.12153 4.28285 4.35369 4.47428 4.50890 4.51949 4.64761 4.65504 4.66829 4.68593 4.70571 4.79057 4.93619 4.99696 5.00359 5.08804 5.11728 5.17986 5.19395 5.22251 5.37928 5.39920 5.50789 5.55333 5.59500 5.61543 5.64474 5.80284 5.97968 6.05662 6.07796 6.37972 6.48638 6.63946 6.72781 6.81492 7.18839 7.26282 8.74792 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.001656 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.770574 B =16903.084022 C =18166.108436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.500 3.500 3 O -0.582 6.582 4 N -0.661 5.661 5 C 0.137 3.863 6 C -0.137 4.137 7 C -0.095 4.095 8 C -0.053 4.053 9 C -0.075 4.075 10 C 0.272 3.728 11 N -0.495 5.495 12 C 0.054 3.946 13 C -0.182 4.182 14 C -0.052 4.052 15 C -0.226 4.226 16 C 0.232 3.768 17 N -0.621 5.621 18 C 0.093 3.907 19 C 0.264 3.736 20 C -0.546 4.546 21 H 0.047 0.953 22 C 0.016 3.984 23 N -0.922 5.922 24 Si 0.955 3.045 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.284 1.284 28 C -0.220 4.220 29 C -0.022 4.022 30 C -0.076 4.076 31 C -0.133 4.133 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.432 0.568 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.194 0.806 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.016 0.984 45 H 0.010 0.990 46 H 0.268 0.732 47 H 0.148 0.852 48 H 0.173 0.827 49 H 0.155 0.845 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.832 -12.437 14.087 36.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.291 3.709 3 O -0.461 6.461 4 N -0.308 5.308 5 C 0.043 3.957 6 C -0.157 4.157 7 C -0.114 4.114 8 C -0.055 4.055 9 C -0.079 4.079 10 C -0.040 4.040 11 N -0.172 5.172 12 C 0.032 3.968 13 C -0.185 4.185 14 C -0.071 4.071 15 C -0.249 4.249 16 C 0.124 3.876 17 N -0.325 5.325 18 C -0.050 4.050 19 C 0.143 3.857 20 C -0.584 4.584 21 H 0.066 0.934 22 C -0.184 4.184 23 N -0.562 5.562 24 Si 0.780 3.220 25 H -0.187 1.187 26 H -0.200 1.200 27 H -0.210 1.210 28 C -0.242 4.242 29 C -0.040 4.040 30 C -0.095 4.095 31 C -0.152 4.152 32 H 0.137 0.863 33 H 0.105 0.895 34 H 0.135 0.865 35 H 0.272 0.728 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.211 0.789 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.034 0.966 45 H 0.028 0.972 46 H 0.077 0.923 47 H 0.165 0.835 48 H 0.191 0.809 49 H 0.173 0.827 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -30.313 -10.370 13.051 34.594 hybrid contribution 0.722 1.129 -0.735 1.529 sum -29.591 -9.240 12.316 33.357 Atomic orbital electron populations 1.21951 0.86861 1.06351 1.07037 1.21943 0.92729 0.82537 0.73685 1.90762 1.71933 1.33366 1.50082 1.43536 1.04144 1.10671 1.72481 1.18012 0.83668 0.97033 0.97032 1.21066 0.93701 0.99984 1.00938 1.21213 0.93834 0.97823 0.98545 1.18328 0.89150 0.97371 1.00626 1.16789 0.91486 0.92930 1.06686 1.26532 0.91948 0.93046 0.92522 1.81353 1.10320 1.13642 1.11890 1.22760 0.90183 0.93429 0.90412 1.18859 0.94132 1.10362 0.95156 1.21014 0.93379 0.95281 0.97457 1.20508 0.94527 1.09927 0.99899 1.18464 0.83762 0.91274 0.94098 1.47025 1.03471 1.65665 1.16335 1.21733 0.94394 0.98557 0.90296 1.18812 0.92398 0.93417 0.81122 1.21740 1.40930 0.96409 0.99367 0.93429 1.25715 0.95373 1.02477 0.94841 1.70005 1.43999 1.38151 1.04020 0.85655 0.78401 0.79916 0.78029 1.18688 1.20000 1.20955 1.20789 0.96851 1.10534 0.96068 1.21280 0.91609 0.92787 0.98354 1.21386 0.93387 0.97717 0.96974 1.21136 0.94394 1.00214 0.99500 0.86259 0.89470 0.86519 0.72777 0.86339 0.86359 0.78913 0.87957 0.89462 0.92004 0.92471 0.89605 0.96561 0.97246 0.92313 0.83450 0.80924 0.82735 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.48 10.32 71.24 0.74 0.26 16 2 C 0.50 6.65 7.76 87.66 0.68 7.33 16 3 O -0.58 -14.63 14.64 -3.07 -0.04 -14.68 16 4 N -0.66 -5.97 5.33 -303.37 -1.62 -7.59 16 5 C 0.14 2.06 6.27 38.23 0.24 2.30 16 6 C -0.14 -2.84 8.66 22.36 0.19 -2.65 16 7 C -0.10 -2.03 9.74 22.49 0.22 -1.81 16 8 C -0.05 -1.01 5.31 -20.03 -0.11 -1.12 16 9 C -0.07 -1.69 5.23 -19.90 -0.10 -1.80 16 10 C 0.27 9.02 11.71 88.32 1.03 10.05 16 11 N -0.49 -20.37 18.23 19.01 0.35 -20.02 16 12 C 0.05 0.98 9.50 24.01 0.23 1.20 16 13 C -0.18 -4.83 5.48 -20.16 -0.11 -4.94 16 14 C -0.05 -1.89 8.24 22.46 0.19 -1.70 16 15 C -0.23 -9.88 9.16 22.24 0.20 -9.68 16 16 C 0.23 9.25 6.56 38.44 0.25 9.50 16 17 N -0.62 -26.65 2.98 -726.39 -2.16 -28.81 16 18 C 0.09 3.01 10.18 127.77 1.30 4.31 16 19 C 0.26 14.05 4.90 85.63 0.42 14.47 16 20 C -0.55 -31.72 9.39 25.60 0.24 -31.48 16 21 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 22 C 0.02 0.92 5.46 84.66 0.46 1.38 16 23 N -0.92 -55.73 13.29 21.45 0.28 -55.44 16 24 Si 0.95 46.55 29.54 68.60 2.03 48.58 16 25 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 27 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 28 C -0.22 -6.43 9.16 22.24 0.20 -6.22 16 29 C -0.02 -0.50 9.77 22.46 0.22 -0.29 16 30 C -0.08 -1.04 9.72 22.49 0.22 -0.82 16 31 C -0.13 -1.47 9.95 22.36 0.22 -1.25 16 32 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.09 0.47 8.12 -2.39 -0.02 0.45 16 34 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.43 0.02 8.82 -92.71 -0.82 -0.80 16 36 H 0.12 2.84 6.36 -2.91 -0.02 2.83 16 37 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.10 3.83 6.01 -2.91 -0.02 3.81 16 40 H 0.09 4.56 6.11 -2.91 -0.02 4.54 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 43 H 0.09 2.27 6.17 -2.39 -0.01 2.25 16 44 H 0.02 0.90 8.07 -2.39 -0.02 0.88 16 45 H 0.01 0.56 6.17 -2.38 -0.01 0.54 16 46 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.15 3.45 6.11 -2.91 -0.02 3.43 16 48 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 49 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 50 H 0.16 0.66 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -87.11 428.62 5.94 -81.17 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.18 Total: 9.73 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 6.94 Total: -12.94 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -3.15 Total: -111.86 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.04 Total: -14.68 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -87.11 5.94 -81.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001735969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.071 kcal (2) G-P(sol) polarization free energy of solvation -87.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds