Wall clock time and date at job start Tue Mar 31 2020 05:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31598 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48497 * 109.47390 * 240.28060 * 3 2 1 5 5 H 1.48508 * 109.47122 * 0.27912 * 3 2 1 6 6 H 1.48505 * 109.47104 * 120.27329 * 3 2 1 7 7 C 1.38600 * 120.00103 * 180.27812 * 2 1 3 8 8 H 1.08000 * 119.99824 * 179.72386 * 7 2 1 9 9 O 1.34753 * 120.00255 * 359.72253 * 7 2 1 10 10 C 1.35744 * 117.00152 * 180.02562 * 9 7 2 11 11 C 1.42031 * 120.38104 * 84.83868 * 10 9 7 12 12 O 1.21972 * 121.30713 * 359.97438 * 11 10 9 13 13 C 1.47537 * 117.37615 * 179.97438 * 11 10 9 14 14 C 1.39483 * 121.15873 * 180.02562 * 13 11 10 15 15 C 1.37859 * 119.57998 * 179.97438 * 14 13 11 16 16 Cl 1.73602 * 119.87351 * 179.97438 * 15 14 13 17 17 C 1.38842 * 120.24693 * 0.02562 * 15 14 13 18 18 C 1.37833 * 120.68041 * 359.95178 * 17 15 14 19 19 C 1.39019 * 119.97693 * 0.04739 * 18 17 15 20 20 O 1.34920 * 120.64862 * 179.97438 * 19 18 17 21 21 C 1.34264 * 122.45673 * 179.71194 * 20 19 18 22 22 C 1.47440 * 118.87420 * 180.27028 * 21 20 19 23 23 C 1.39793 * 120.16709 * 130.70014 * 22 21 20 24 24 C 1.37865 * 119.84478 * 179.76701 * 23 22 21 25 25 C 1.38444 * 120.19347 * 0.51128 * 24 23 22 26 26 C 1.38321 * 120.35254 * 359.74385 * 25 24 23 27 27 C 1.38083 * 120.14404 * 359.97438 * 26 25 24 28 28 Cl 1.73602 * 120.09945 * 180.02562 * 27 26 25 29 29 H 0.96993 * 120.00045 * 359.71875 * 1 2 3 30 30 H 1.07990 * 120.21322 * 359.95153 * 14 13 11 31 31 H 1.08000 * 119.66254 * 179.97438 * 17 15 14 32 32 H 1.07993 * 120.01102 * 180.02562 * 18 17 15 33 33 H 1.07999 * 120.07992 * 0.02562 * 23 22 21 34 34 H 1.07997 * 119.90157 * 180.25394 * 24 23 22 35 35 H 1.08003 * 119.82605 * 179.76323 * 25 24 23 36 36 H 1.07995 * 119.92801 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.0985 1.6995 -1.2159 5 1 1.2849 2.7465 0.0068 6 1 3.1087 1.6936 1.2092 7 6 2.0090 -1.2003 -0.0058 8 1 3.0890 -1.2002 -0.0103 9 8 1.3353 -2.3673 -0.0058 10 6 2.0747 -3.5057 -0.0112 11 6 2.5630 -4.0508 1.2061 12 8 2.3334 -3.5152 2.2776 13 6 3.3589 -5.2903 1.1233 14 6 3.8765 -5.8935 2.2696 15 6 4.6153 -7.0517 2.1546 16 17 5.2637 -7.8085 3.5761 17 6 4.8437 -7.6145 0.9060 18 6 4.3368 -7.0276 -0.2334 19 6 3.5891 -5.8593 -0.1392 20 8 3.0870 -5.2731 -1.2457 21 6 2.3556 -4.1481 -1.1964 22 6 1.8405 -3.5780 -2.4548 23 6 0.4936 -3.2203 -2.5644 24 6 0.0201 -2.6833 -3.7426 25 6 0.8720 -2.5076 -4.8196 26 6 2.2050 -2.8637 -4.7218 27 6 2.6957 -3.3974 -3.5466 28 17 4.3691 -3.8433 -3.4249 29 1 -0.4850 0.8400 0.0041 30 1 3.6999 -5.4559 3.2409 31 1 5.4242 -8.5218 0.8269 32 1 4.5207 -7.4748 -1.1990 33 1 -0.1736 -3.3603 -1.7268 34 1 -1.0194 -2.4028 -3.8269 35 1 0.4939 -2.0899 -5.7411 36 1 2.8634 -2.7240 -5.5664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001925402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:36 Heat of formation + Delta-G solvation = -21.330938 kcal Electronic energy + Delta-G solvation = -28998.368205 eV Core-core repulsion = 24659.762652 eV Total energy + Delta-G solvation = -4338.605553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 376.010 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.55045 -39.12646 -38.49899 -38.16849 -36.74807 -36.27645 -36.17049 -32.71876 -31.75825 -31.57036 -30.55342 -30.18573 -28.97316 -25.15025 -24.78250 -23.60917 -22.44757 -22.31376 -21.44908 -19.31273 -18.61569 -17.93907 -17.36376 -16.51054 -16.20898 -15.98019 -15.51113 -15.20716 -14.96494 -14.84113 -14.26493 -14.13649 -13.93396 -13.76065 -13.61836 -13.50256 -13.23989 -13.06204 -12.78364 -12.70240 -11.87910 -11.63084 -11.60080 -11.40170 -11.26561 -11.23366 -11.16086 -11.07237 -10.70998 -10.55287 -10.44780 -9.94171 -9.34591 -9.30509 -9.09550 -8.57516 -8.44109 -8.24872 -7.56410 -6.17538 -3.82462 0.50280 0.74054 1.12141 1.52762 1.83396 1.95617 2.32063 2.58378 2.93078 3.24010 3.26269 3.28549 3.80508 3.88776 4.17082 4.26591 4.39657 4.64019 4.77392 4.93439 5.01468 5.08885 5.17796 5.29114 5.42017 5.49614 5.53182 5.63371 5.66302 5.78653 5.90686 5.94292 6.09442 6.22719 6.35064 6.35941 6.47872 6.57586 6.73279 7.03277 7.30558 7.49687 8.03703 8.19680 9.25679 9.85876 11.00323 Molecular weight = 376.01amu Principal moments of inertia in cm(-1) A = 0.008985 B = 0.003975 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.464073 B = 7041.544449 C = 9034.153821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.038 3.962 3 Si 0.927 3.073 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.360 4.360 8 H 0.067 0.933 9 O -0.190 6.190 10 C -0.018 4.018 11 C 0.398 3.602 12 O -0.438 6.438 13 C -0.211 4.211 14 C -0.019 4.019 15 C -0.078 4.078 16 Cl -0.068 7.068 17 C -0.053 4.053 18 C -0.135 4.135 19 C 0.165 3.835 20 O -0.204 6.204 21 C 0.102 3.898 22 C -0.020 4.020 23 C -0.034 4.034 24 C -0.114 4.114 25 C -0.099 4.099 26 C -0.124 4.124 27 C -0.009 4.009 28 Cl -0.068 7.068 29 H 0.264 0.736 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.553 -13.471 -7.260 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.163 4.163 3 Si 0.753 3.247 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.436 4.436 8 H 0.085 0.915 9 O -0.102 6.102 10 C -0.067 4.067 11 C 0.280 3.720 12 O -0.318 6.318 13 C -0.213 4.213 14 C -0.038 4.038 15 C -0.105 4.105 16 Cl -0.039 7.039 17 C -0.072 4.072 18 C -0.154 4.154 19 C 0.119 3.881 20 O -0.109 6.109 21 C 0.056 3.944 22 C -0.021 4.021 23 C -0.052 4.052 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.142 4.142 27 C -0.036 4.036 28 Cl -0.039 7.039 29 H 0.074 0.926 30 H 0.167 0.833 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.306 -13.207 -6.766 16.124 hybrid contribution 0.879 0.850 0.458 1.306 sum 7.185 -12.357 -6.308 15.625 Atomic orbital electron populations 1.69998 1.05320 1.26747 1.49305 1.24927 0.95783 0.97621 0.97929 0.85997 0.78786 0.81042 0.78873 1.19941 1.20459 1.19953 1.20902 0.90378 0.80711 1.51631 0.91490 1.84006 1.27653 1.08609 1.89915 1.20520 1.00775 0.95025 0.90355 1.19489 0.78639 0.83407 0.90490 1.90731 1.50568 1.59380 1.31083 1.21009 1.06675 1.00792 0.92858 1.20986 0.91871 0.91801 0.99125 1.20714 1.04010 0.97290 0.88478 1.98364 1.85185 1.81288 1.39040 1.20930 0.97415 0.99323 0.89494 1.20323 1.00723 0.94400 0.99960 1.19342 0.92857 0.92144 0.83794 1.83088 1.58372 1.36889 1.32562 1.20869 0.93364 0.86327 0.93889 1.17853 0.93475 1.01877 0.88941 1.21306 0.92864 0.93562 0.97479 1.21127 1.00550 0.98810 0.92712 1.21175 0.92705 0.98730 0.99096 1.20824 0.96242 1.00898 0.96283 1.20979 0.85284 1.02219 0.95101 1.98349 1.16016 1.91278 1.98223 0.92649 0.83280 0.83649 0.83238 0.83898 0.85011 0.85278 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.54 13.67 55.48 0.76 -24.78 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.93 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.36 -10.22 9.81 30.87 0.30 -9.91 16 8 H 0.07 1.88 7.75 -52.49 -0.41 1.47 16 9 O -0.19 -5.20 7.58 -14.79 -0.11 -5.31 16 10 C -0.02 -0.41 5.50 -38.32 -0.21 -0.62 16 11 C 0.40 8.87 6.99 -34.34 -0.24 8.63 16 12 O -0.44 -11.10 17.20 -10.13 -0.17 -11.27 16 13 C -0.21 -3.71 5.88 -104.83 -0.62 -4.33 16 14 C -0.02 -0.29 9.43 -39.26 -0.37 -0.66 16 15 C -0.08 -0.97 6.32 -39.50 -0.25 -1.22 16 16 Cl -0.07 -0.75 28.95 -51.86 -1.50 -2.25 16 17 C -0.05 -0.55 9.79 -39.51 -0.39 -0.94 16 18 C -0.14 -1.57 10.00 -39.44 -0.39 -1.96 16 19 C 0.17 2.57 6.77 -38.48 -0.26 2.31 16 20 O -0.20 -3.44 8.35 4.09 0.03 -3.41 16 21 C 0.10 2.02 5.97 -36.03 -0.22 1.80 16 22 C -0.02 -0.38 5.36 -104.96 -0.56 -0.94 16 23 C -0.03 -0.62 8.67 -39.14 -0.34 -0.96 16 24 C -0.11 -1.73 10.03 -39.64 -0.40 -2.13 16 25 C -0.10 -1.31 10.04 -39.48 -0.40 -1.71 16 26 C -0.12 -1.74 9.82 -39.61 -0.39 -2.13 16 27 C -0.01 -0.15 6.34 -39.03 -0.25 -0.40 16 28 Cl -0.07 -1.04 27.06 -51.86 -1.40 -2.45 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.15 2.27 7.78 -52.49 -0.41 1.87 16 31 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.14 2.79 7.55 -52.49 -0.40 2.39 16 34 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -32.41 357.60 -9.56 -41.97 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -2.46 Total: -0.37 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -5.07 Total: -14.19 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.76 Total: -24.78 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.25 Total: -19.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -2.90 Total: -4.70 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.41 -9.56 -41.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001925402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.644 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds