Wall clock time and date at job start Tue Mar 31 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31598 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48497 * 109.47390 * 240.28060 * 3 2 1 5 5 H 1.48508 * 109.47122 * 0.27912 * 3 2 1 6 6 H 1.48505 * 109.47104 * 120.27329 * 3 2 1 7 7 C 1.38600 * 120.00103 * 180.27812 * 2 1 3 8 8 H 1.08000 * 119.99824 * 179.72386 * 7 2 1 9 9 O 1.34753 * 120.00255 * 359.72253 * 7 2 1 10 10 C 1.35744 * 117.00152 * 180.02562 * 9 7 2 11 11 C 1.42031 * 120.38104 * 84.83868 * 10 9 7 12 12 O 1.21972 * 121.30713 * 359.97438 * 11 10 9 13 13 C 1.47537 * 117.37615 * 179.97438 * 11 10 9 14 14 C 1.39483 * 121.15873 * 180.02562 * 13 11 10 15 15 C 1.37859 * 119.57998 * 179.97438 * 14 13 11 16 16 Cl 1.73602 * 119.87351 * 179.97438 * 15 14 13 17 17 C 1.38842 * 120.24693 * 0.02562 * 15 14 13 18 18 C 1.37833 * 120.68041 * 359.95178 * 17 15 14 19 19 C 1.39019 * 119.97693 * 0.04739 * 18 17 15 20 20 O 1.34920 * 120.64862 * 179.97438 * 19 18 17 21 21 C 1.34264 * 122.45673 * 179.71194 * 20 19 18 22 22 C 1.47440 * 118.87420 * 180.27028 * 21 20 19 23 23 C 1.39793 * 120.16709 * 130.70014 * 22 21 20 24 24 C 1.37865 * 119.84478 * 179.76701 * 23 22 21 25 25 C 1.38444 * 120.19347 * 0.51128 * 24 23 22 26 26 C 1.38321 * 120.35254 * 359.74385 * 25 24 23 27 27 C 1.38083 * 120.14404 * 359.97438 * 26 25 24 28 28 Cl 1.73602 * 120.09945 * 180.02562 * 27 26 25 29 29 H 0.96993 * 120.00045 * 359.71875 * 1 2 3 30 30 H 1.07990 * 120.21322 * 359.95153 * 14 13 11 31 31 H 1.08000 * 119.66254 * 179.97438 * 17 15 14 32 32 H 1.07993 * 120.01102 * 180.02562 * 18 17 15 33 33 H 1.07999 * 120.07992 * 0.02562 * 23 22 21 34 34 H 1.07997 * 119.90157 * 180.25394 * 24 23 22 35 35 H 1.08003 * 119.82605 * 179.76323 * 25 24 23 36 36 H 1.07995 * 119.92801 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.0985 1.6995 -1.2159 5 1 1.2849 2.7465 0.0068 6 1 3.1087 1.6936 1.2092 7 6 2.0090 -1.2003 -0.0058 8 1 3.0890 -1.2002 -0.0103 9 8 1.3353 -2.3673 -0.0058 10 6 2.0747 -3.5057 -0.0112 11 6 2.5630 -4.0508 1.2061 12 8 2.3334 -3.5152 2.2776 13 6 3.3589 -5.2903 1.1233 14 6 3.8765 -5.8935 2.2696 15 6 4.6153 -7.0517 2.1546 16 17 5.2637 -7.8085 3.5761 17 6 4.8437 -7.6145 0.9060 18 6 4.3368 -7.0276 -0.2334 19 6 3.5891 -5.8593 -0.1392 20 8 3.0870 -5.2731 -1.2457 21 6 2.3556 -4.1481 -1.1964 22 6 1.8405 -3.5780 -2.4548 23 6 0.4936 -3.2203 -2.5644 24 6 0.0201 -2.6833 -3.7426 25 6 0.8720 -2.5076 -4.8196 26 6 2.2050 -2.8637 -4.7218 27 6 2.6957 -3.3974 -3.5466 28 17 4.3691 -3.8433 -3.4249 29 1 -0.4850 0.8400 0.0041 30 1 3.6999 -5.4559 3.2409 31 1 5.4242 -8.5218 0.8269 32 1 4.5207 -7.4748 -1.1990 33 1 -0.1736 -3.3603 -1.7268 34 1 -1.0194 -2.4028 -3.8269 35 1 0.4939 -2.0899 -5.7411 36 1 2.8634 -2.7240 -5.5664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001925402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:35 Heat of formation + Delta-G solvation = -38.714980 kcal Electronic energy + Delta-G solvation = -28999.122034 eV Core-core repulsion = 24659.762652 eV Total energy + Delta-G solvation = -4339.359382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 376.010 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.98660 -40.41065 -40.15799 -39.39874 -38.39887 -37.45363 -37.38127 -34.44635 -33.49489 -32.83464 -31.80887 -31.45449 -30.39757 -27.11442 -26.16328 -25.06005 -23.66529 -23.57629 -22.82065 -20.76356 -20.21702 -19.54319 -18.91492 -17.85265 -17.58041 -17.50208 -16.86790 -16.69436 -16.25469 -16.15545 -16.02299 -15.55790 -15.31232 -15.24013 -14.97017 -14.87858 -14.57532 -14.39656 -14.26833 -13.79820 -13.56306 -13.45023 -12.82975 -12.76690 -12.56771 -12.46776 -12.44300 -12.34805 -12.22510 -12.08632 -11.98292 -11.81676 -10.99850 -10.56905 -10.41759 -10.25417 -9.82281 -9.65942 -9.14080 -8.24660 -5.97164 -0.87699 -0.53468 -0.08338 0.26248 0.44366 0.89786 1.02974 1.19833 1.32049 1.39759 1.45034 1.61158 2.24421 2.47484 2.59137 2.77172 3.04826 3.15904 3.33064 3.62390 3.75220 3.83280 3.88456 4.07330 4.12935 4.26660 4.33723 4.41968 4.52299 4.57136 4.65814 4.75070 4.85173 4.92662 4.97228 5.11038 5.15122 5.24489 5.33995 5.47489 5.81014 6.00864 6.11631 6.41283 7.16593 7.92272 8.95902 Molecular weight = 376.01amu Principal moments of inertia in cm(-1) A = 0.008985 B = 0.003975 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.464073 B = 7041.544449 C = 9034.153821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.015 4.015 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.276 1.276 7 C -0.373 4.373 8 H 0.053 0.947 9 O -0.220 6.220 10 C -0.089 4.089 11 C 0.388 3.612 12 O -0.500 6.500 13 C -0.228 4.228 14 C -0.035 4.035 15 C -0.066 4.066 16 Cl -0.048 7.048 17 C -0.028 4.028 18 C -0.111 4.111 19 C 0.142 3.858 20 O -0.193 6.193 21 C 0.159 3.841 22 C -0.060 4.060 23 C -0.055 4.055 24 C -0.120 4.120 25 C -0.077 4.077 26 C -0.117 4.117 27 C -0.017 4.017 28 Cl -0.059 7.059 29 H 0.265 0.735 30 H 0.136 0.864 31 H 0.196 0.804 32 H 0.192 0.808 33 H 0.112 0.888 34 H 0.151 0.849 35 H 0.177 0.823 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.182 -15.715 -10.646 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.812 3.188 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.202 1.202 7 C -0.450 4.450 8 H 0.071 0.929 9 O -0.132 6.132 10 C -0.137 4.137 11 C 0.276 3.724 12 O -0.385 6.385 13 C -0.231 4.231 14 C -0.054 4.054 15 C -0.093 4.093 16 Cl -0.019 7.019 17 C -0.047 4.047 18 C -0.129 4.129 19 C 0.096 3.904 20 O -0.097 6.097 21 C 0.111 3.889 22 C -0.061 4.061 23 C -0.073 4.073 24 C -0.138 4.138 25 C -0.095 4.095 26 C -0.136 4.136 27 C -0.044 4.044 28 Cl -0.030 7.030 29 H 0.074 0.926 30 H 0.154 0.846 31 H 0.213 0.787 32 H 0.209 0.791 33 H 0.130 0.870 34 H 0.169 0.831 35 H 0.194 0.806 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.970 -15.522 -10.175 20.613 hybrid contribution 0.225 1.176 1.352 1.806 sum 9.195 -14.346 -8.823 19.188 Atomic orbital electron populations 1.70132 1.06829 1.27550 1.51449 1.25914 0.96743 1.00803 0.97602 0.85067 0.77786 0.76829 0.79136 1.18291 1.19096 1.20204 1.21038 0.89875 0.82248 1.51851 0.92938 1.83999 1.29000 1.09251 1.90948 1.20784 1.05353 0.95511 0.92043 1.19885 0.78440 0.84633 0.89486 1.90664 1.53860 1.61586 1.32376 1.20689 1.07753 0.99648 0.94974 1.20920 0.93233 0.93289 0.97928 1.20870 1.02254 0.95921 0.90244 1.98383 1.84609 1.80541 1.38326 1.21513 0.95637 0.99842 0.87660 1.20853 0.97897 0.91853 1.02276 1.19827 0.94469 0.93684 0.82415 1.83134 1.57587 1.35545 1.33442 1.21051 0.89387 0.84864 0.93623 1.18019 0.94385 1.04359 0.89356 1.21227 0.92782 0.95184 0.98123 1.21443 1.02104 0.98101 0.92159 1.21715 0.91934 0.96099 0.99743 1.21328 0.97112 0.98998 0.96120 1.21176 0.85532 1.02483 0.95202 1.98345 1.15136 1.91230 1.98260 0.92585 0.84567 0.78662 0.79133 0.87016 0.83114 0.80567 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.84 13.67 21.61 0.30 -56.55 16 2 C -0.01 -0.88 5.49 84.81 0.47 -0.41 16 3 Si 0.99 46.13 29.55 68.60 2.03 48.16 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.37 -22.83 9.81 67.91 0.67 -22.17 16 8 H 0.05 3.20 7.75 -2.91 -0.02 3.18 16 9 O -0.22 -13.18 7.58 -7.48 -0.06 -13.24 16 10 C -0.09 -4.53 5.50 23.09 0.13 -4.40 16 11 C 0.39 19.14 6.99 25.67 0.18 19.32 16 12 O -0.50 -28.42 17.20 9.19 0.16 -28.26 16 13 C -0.23 -8.45 5.88 -20.00 -0.12 -8.57 16 14 C -0.03 -1.08 9.43 22.48 0.21 -0.87 16 15 C -0.07 -1.49 6.32 22.32 0.14 -1.34 16 16 Cl -0.05 -0.93 28.95 -2.72 -0.08 -1.01 16 17 C -0.03 -0.46 9.79 22.32 0.22 -0.24 16 18 C -0.11 -2.10 10.00 22.36 0.22 -1.88 16 19 C 0.14 4.30 6.77 22.98 0.16 4.46 16 20 O -0.19 -6.49 8.35 -8.26 -0.07 -6.56 16 21 C 0.16 6.60 5.97 24.57 0.15 6.75 16 22 C -0.06 -2.31 5.36 -20.08 -0.11 -2.42 16 23 C -0.05 -2.10 8.67 22.56 0.20 -1.90 16 24 C -0.12 -3.56 10.03 22.23 0.22 -3.34 16 25 C -0.08 -1.78 10.04 22.34 0.22 -1.56 16 26 C -0.12 -2.90 9.82 22.25 0.22 -2.68 16 27 C -0.02 -0.55 6.34 22.63 0.14 -0.40 16 28 Cl -0.06 -1.70 27.06 -2.72 -0.07 -1.77 16 29 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.14 4.53 7.78 -2.92 -0.02 4.50 16 31 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.19 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.11 4.90 7.55 -2.91 -0.02 4.88 16 34 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -81.53 357.60 6.68 -74.85 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.17 Total: 6.05 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 3.32 Total: -21.66 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.30 Total: -56.55 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: 0.03 Total: -48.06 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.15 Total: -2.78 kcal Total: -81.53 6.68 -74.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001925402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.131 kcal (2) G-P(sol) polarization free energy of solvation -81.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds