Wall clock time and date at job start Tue Mar 31 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86799 * 119.99748 * 2 1 4 4 H 1.48497 * 109.47308 * 269.99997 * 3 2 1 5 5 H 1.48504 * 109.47152 * 30.00425 * 3 2 1 6 6 H 1.48499 * 109.47113 * 150.00186 * 3 2 1 7 7 C 1.38525 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99895 * 359.97438 * 7 2 1 9 9 O 1.34766 * 119.99561 * 180.02562 * 7 2 1 10 10 C 1.35718 * 116.99389 * 179.97438 * 9 7 2 11 11 C 1.41637 * 120.38540 * 89.99860 * 10 9 7 12 12 O 1.22047 * 121.27832 * 0.04094 * 11 10 9 13 13 C 1.47596 * 117.44806 * 180.02562 * 11 10 9 14 14 C 1.39468 * 121.10443 * 179.72765 * 13 11 10 15 15 C 1.37777 * 119.60522 * 179.73636 * 14 13 11 16 16 C 1.38715 * 120.26784 * 0.53736 * 15 14 13 17 17 C 1.37874 * 120.66418 * 359.72931 * 16 15 14 18 18 C 1.38983 * 119.97875 * 359.97438 * 17 16 15 19 19 O 1.34951 * 120.60794 * 179.97438 * 18 17 16 20 20 C 1.34433 * 122.40065 * 180.02562 * 19 18 17 21 21 C 1.46238 * 118.94154 * 179.97438 * 20 19 18 22 22 C 1.37846 * 126.08102 * 0.02562 * 21 20 19 23 23 C 1.40331 * 106.56135 * 179.97438 * 22 21 20 24 24 C 1.35269 * 107.19130 * 0.02562 * 23 22 21 25 25 Br 1.89095 * 125.51181 * 179.97438 * 24 23 22 26 26 O 1.34087 * 108.98049 * 359.73304 * 24 23 22 27 27 H 0.96997 * 120.00340 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.19775 * 359.96729 * 14 13 11 29 29 H 1.08002 * 119.86498 * 180.27117 * 15 14 13 30 30 H 1.07992 * 119.66858 * 179.74682 * 16 15 14 31 31 H 1.08002 * 120.01185 * 179.97438 * 17 16 15 32 32 H 1.08004 * 126.72030 * 0.03264 * 22 21 20 33 33 H 1.08006 * 126.40786 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0090 -1.1997 -0.0005 8 1 1.4690 -2.1349 -0.0005 9 8 3.3567 -1.1995 0.0000 10 6 3.9728 -2.4088 0.0000 11 6 4.2985 -3.0469 -1.2219 12 8 4.0366 -2.5301 -2.2961 13 6 4.9671 -4.3605 -1.1463 14 6 5.3169 -5.0585 -2.3020 15 6 5.9450 -6.2801 -2.1954 16 6 6.2186 -6.8192 -0.9469 17 6 5.8727 -6.1413 0.2028 18 6 5.2439 -4.9048 0.1174 19 8 4.8993 -4.2306 1.2344 20 6 4.2897 -3.0331 1.1938 21 6 3.9496 -2.3692 2.4516 22 6 4.1952 -2.8547 3.7182 23 6 3.7052 -1.8944 4.6166 24 6 3.1907 -0.8833 3.8799 25 35 2.3909 0.6839 4.5726 26 8 3.3443 -1.1696 2.5790 27 1 -0.4850 0.8400 -0.0004 28 1 5.1000 -4.6422 -3.2746 29 1 6.2217 -6.8222 -3.0877 30 1 6.7076 -7.7793 -0.8747 31 1 6.0903 -6.5710 1.1694 32 1 4.6722 -3.7904 3.9698 33 1 3.7329 -1.9522 5.6948 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001978578.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:37 Heat of formation + Delta-G solvation = -0.405843 kcal Electronic energy + Delta-G solvation = -25634.798298 eV Core-core repulsion = 21641.963275 eV Total energy + Delta-G solvation = -3992.835024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 375.982 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -42.38121 -41.48191 -38.64057 -38.28794 -36.75536 -33.04824 -32.64221 -31.95823 -31.65722 -30.90477 -30.26653 -28.06981 -25.09575 -24.41898 -23.50802 -22.22448 -21.59801 -20.72279 -19.12094 -18.53486 -18.07784 -17.66867 -16.40622 -16.31026 -15.93638 -15.66471 -15.34406 -15.06699 -14.60839 -14.22002 -14.03760 -13.71997 -13.57697 -12.84461 -12.81291 -12.78741 -12.53147 -12.27521 -12.25400 -12.01788 -11.73504 -11.15682 -11.12097 -10.59680 -10.40767 -10.31551 -9.94926 -9.65473 -9.41197 -9.27598 -9.21446 -8.45197 -8.32147 -7.46061 -6.09443 -3.83165 0.36228 0.79162 0.99993 1.22479 2.03607 2.09345 2.67168 3.08697 3.38041 3.43061 3.58015 3.77958 3.85331 4.10628 4.39031 4.50272 4.59054 4.78141 4.87664 4.95740 5.06286 5.18892 5.25902 5.39666 5.56934 5.64878 5.69623 5.78436 5.84782 5.93346 6.08149 6.19224 6.33281 6.38006 6.56006 6.99086 7.39031 7.74005 7.97032 8.28472 9.26057 9.76333 11.01406 Molecular weight = 375.98amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.004128 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.292853 B = 6781.478639 C = 8675.557120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.364 4.364 8 H 0.083 0.917 9 O -0.229 6.229 10 C 0.003 3.997 11 C 0.399 3.601 12 O -0.436 6.436 13 C -0.216 4.216 14 C -0.029 4.029 15 C -0.157 4.157 16 C -0.061 4.061 17 C -0.145 4.145 18 C 0.159 3.841 19 O -0.210 6.210 20 C 0.138 3.862 21 C 0.057 3.943 22 C -0.172 4.172 23 C -0.168 4.168 24 C -0.010 4.010 25 Br 0.051 6.949 26 O -0.085 6.085 27 H 0.273 0.727 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.649 -9.890 9.007 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.439 4.439 8 H 0.101 0.899 9 O -0.141 6.141 10 C -0.045 4.045 11 C 0.281 3.719 12 O -0.315 6.315 13 C -0.218 4.218 14 C -0.047 4.047 15 C -0.175 4.175 16 C -0.079 4.079 17 C -0.163 4.163 18 C 0.113 3.887 19 O -0.116 6.116 20 C 0.091 3.909 21 C 0.004 3.996 22 C -0.192 4.192 23 C -0.189 4.189 24 C -0.142 4.142 25 Br 0.135 6.865 26 O 0.023 5.977 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.180 0.820 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.086 -8.598 8.658 16.486 hybrid contribution 0.258 0.315 -0.170 0.441 sum 11.344 -8.282 8.487 16.411 Atomic orbital electron populations 1.69674 1.05102 1.27494 1.51782 1.24083 0.94669 0.97785 0.96592 0.86439 0.80722 0.82797 0.78802 1.20256 1.20859 1.18223 1.20319 0.75789 0.95691 1.52082 0.89883 1.83589 1.21336 1.17912 1.91307 1.20545 1.02088 0.91217 0.90682 1.19327 0.78011 0.84567 0.90000 1.90747 1.44632 1.64972 1.31132 1.20996 1.07565 0.99734 0.93540 1.21168 0.92534 0.93088 0.97919 1.21167 1.01969 0.96354 0.98038 1.21113 0.96414 0.99054 0.91335 1.20387 1.02993 0.92474 1.00487 1.19213 0.94989 0.91637 0.82824 1.82831 1.67178 1.28318 1.33302 1.19164 0.97260 0.83302 0.91177 1.19145 1.02196 0.86581 0.91725 1.22114 1.05412 1.01675 0.89966 1.21497 1.03357 0.93199 1.00881 1.24180 1.08079 0.98066 0.83844 1.96813 1.80380 1.29694 1.79637 1.84558 1.58243 1.30662 1.24234 0.91735 0.84079 0.84898 0.84467 0.84013 0.81968 0.82070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.97 55.47 0.77 -26.92 16 2 C 0.07 2.05 5.49 -17.53 -0.10 1.95 16 3 Si 0.89 23.59 28.61 -169.99 -4.86 18.72 16 4 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.36 -10.85 9.24 30.84 0.28 -10.57 16 8 H 0.08 2.64 7.99 -52.49 -0.42 2.22 16 9 O -0.23 -6.33 6.90 -27.84 -0.19 -6.52 16 10 C 0.00 0.08 5.64 -38.22 -0.22 -0.13 16 11 C 0.40 8.77 6.98 -34.47 -0.24 8.53 16 12 O -0.44 -10.81 17.19 -10.41 -0.18 -10.99 16 13 C -0.22 -3.66 5.88 -104.83 -0.62 -4.28 16 14 C -0.03 -0.40 9.65 -39.29 -0.38 -0.78 16 15 C -0.16 -1.57 10.03 -39.57 -0.40 -1.97 16 16 C -0.06 -0.54 10.01 -39.54 -0.40 -0.94 16 17 C -0.14 -1.55 10.00 -39.44 -0.39 -1.94 16 18 C 0.16 2.36 6.77 -38.51 -0.26 2.10 16 19 O -0.21 -3.40 9.44 3.55 0.03 -3.37 16 20 C 0.14 2.75 6.91 -36.31 -0.25 2.50 16 21 C 0.06 1.13 6.95 -36.51 -0.25 0.87 16 22 C -0.17 -2.61 10.68 -38.94 -0.42 -3.03 16 23 C -0.17 -2.45 10.82 -39.85 -0.43 -2.89 16 24 C -0.01 -0.19 7.79 29.67 0.23 0.04 16 25 Br 0.05 0.83 34.08 -68.01 -2.32 -1.49 16 26 O -0.08 -1.88 8.28 -16.07 -0.13 -2.01 16 27 H 0.27 7.87 8.31 -40.82 -0.34 7.53 16 28 H 0.14 1.89 7.78 -52.49 -0.41 1.48 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.16 1.90 8.06 -52.48 -0.42 1.47 16 33 H 0.16 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -34.91 326.99 -7.86 -42.77 By element: Atomic # 1 Polarization: -2.52 SS G_CDS: -2.08 Total: -4.60 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -3.83 Total: -10.52 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.47 Total: -22.89 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.86 Total: 18.72 kcal Atomic # 35 Polarization: 0.83 SS G_CDS: -2.32 Total: -1.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.91 -7.86 -42.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001978578.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.365 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds